genome.fa.s90.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  19  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5546335--5546396	24	2.4	25	76	10	63	59	1	1	37	1.17
5546381--5546442	20	2.9	21	83	9	72	66	1	1	30	1.11
5546398--5546449	11	4.7	11	79	9	52	71	1	0	26	0.97
5546403--5546490	41	2.2	40	82	10	99	68	1	1	29	1.04
5546981--5547010	5	5.8	5	96	4	51	76	0	0	23	0.78
5550718--5550784	27	2.5	26	81	11	82	31	4	1	62	1.24
5559061--5559292	83	2.8	83	78	8	215	49	11	4	34	1.59
5560980--5561010	3	10.3	3	92	0	53	70	0	0	29	0.87
5562765--5562790	2	13.0	2	100	0	52	50	0	0	50	1.00
5563095--5563161	27	2.5	27	92	0	116	50	11	0	37	1.39
5563274--5563303	5	5.8	5	96	4	51	56	0	0	43	0.99
5564307--5564332	2	13.0	2	100	0	52	50	0	50	0	1.00
5574358--5574420	29	2.2	29	82	5	74	41	9	0	49	1.35
5574432--5574489	22	2.6	23	78	13	75	50	1	0	48	1.11
5577289--5577321	16	2.0	17	94	5	59	57	0	24	18	1.40
5578600--5578650	22	2.3	22	86	3	66	39	1	5	52	1.37
5591444--5591487	22	2.0	23	86	4	63	52	0	0	47	1.00
5599527--5599734	109	1.9	108	90	1	328	45	10	6	37	1.63
5602797--5602825	14	2.0	15	93	6	51	17	6	6	68	1.34
5604242--5604396	52	2.9	52	77	12	154	60	5	1	31	1.31
5604284--5604322	18	2.1	19	90	4	62	64	0	0	35	0.94
5604281--5604322	23	1.9	23	85	9	61	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5611259--5611533	62	4.5	59	77	8	255	45	5	3	45	1.43
5611260--5611533	122	2.2	123	81	8	299	45	5	3	45	1.44
5620973--5621074	50	2.0	51	98	1	197	29	11	22	36	1.90
5622555--5622602	24	2.0	24	87	4	69	64	2	2	31	1.16
5622555--5622622	25	2.7	24	80	8	64	64	2	4	27	1.27
5632788--5632841	29	1.9	29	85	14	78	57	0	0	42	0.98
5632802--5632840	16	2.4	16	84	12	53	53	0	0	46	1.00
5637884--5638074	103	1.9	99	82	4	238	41	7	14	35	1.75
5638385--5638409	12	2.1	12	100	0	50	52	16	0	32	1.44
5639470--5639512	21	2.0	21	81	0	50	20	20	9	48	1.77
5640987--5641032	22	2.1	22	84	8	58	43	0	4	52	1.21
5641048--5641082	18	1.9	18	88	0	52	71	2	2	22	1.13
5642063--5642106	6	7.3	6	80	10	54	18	0	18	63	1.31
5643102--5643131	15	2.0	15	93	0	51	50	6	0	43	1.28
5648866--5648922	24	2.3	25	84	3	80	19	1	0	78	0.83
5648895--5648944	20	2.6	19	81	12	57	22	8	2	68	1.26
5650735--5650772	16	2.3	16	90	4	58	18	0	2	78	0.86
5651542--5651580	20	2.0	20	84	0	51	38	12	15	33	1.85
5651862--5652002	36	3.9	36	79	3	140	39	14	14	31	1.87
5651856--5652002	72	2.0	72	80	5	163	38	14	14	32	1.87
5665464--5665498	15	2.3	15	95	0	61	14	8	2	74	1.17
5673133--5673179	21	2.2	22	85	11	62	55	4	0	40	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5674834--5675915	557	1.9	568	83	8	1406	41	9	7	41	1.66
5675588--5675651	28	2.3	28	89	5	94	25	6	6	62	1.42
5675597--5675654	28	2.1	28	96	0	107	20	8	6	63	1.45
5675974--5676072	44	2.2	45	83	5	148	36	4	9	50	1.53
5688025--5688053	2	14.5	2	100	0	58	48	0	0	51	1.00
5691628--5691678	26	2.0	26	96	0	93	25	19	9	45	1.81
5695064--5695096	16	1.9	18	88	11	52	33	12	12	42	1.79
5697090--5697148	27	2.2	27	78	6	66	42	25	5	27	1.76
5697417--5697863	223	2.0	223	94	0	779	43	13	12	30	1.82
5702824--5702862	17	2.3	17	90	0	60	12	20	12	53	1.71
5705848--5705909	31	2.0	31	90	0	97	53	9	3	33	1.50
5706557--5706585	2	14.5	2	100	0	58	51	0	0	48	1.00
5706585--5706615	2	15.5	2	100	0	62	51	0	48	0	1.00
5706812--5706938	53	2.4	53	85	1	166	40	16	14	29	1.88
5706798--5706934	52	2.6	52	83	1	175	38	16	14	30	1.88
5708269--5708301	2	16.5	2	100	0	66	51	0	0	48	1.00
5710880--5710905	2	13.0	2	100	0	52	50	0	0	50	1.00
5713363--5713424	11	5.5	11	77	9	63	27	0	0	72	0.85
5713840--5713883	20	2.1	21	91	4	72	31	15	2	50	1.57
5717419--5717498	28	2.8	29	79	12	94	57	1	3	37	1.25
5721484--5721516	2	16.5	2	93	0	57	45	0	3	51	1.16
5721866--5721910	8	5.5	8	80	15	56	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5721870--5721928	25	2.3	26	80	16	70	35	3	0	61	1.13
5722809--5722843	15	2.2	16	90	5	54	74	0	0	25	0.82
5723854--5723879	12	2.2	12	100	0	52	15	42	0	42	1.47
5739604--5740136	202	2.6	209	83	7	651	36	12	6	44	1.67
5740300--5740342	12	3.2	15	78	21	51	72	0	0	27	0.85
5741209--5741249	13	3.1	14	82	6	50	85	0	2	12	0.70
5741372--5741752	48	7.8	50	78	10	202	41	18	9	30	1.82
5741447--5741750	48	6.3	48	81	7	339	42	19	9	28	1.82
5741447--5741752	95	3.2	94	85	5	396	41	19	9	29	1.82
5742280--5742365	33	2.6	33	83	0	109	41	18	16	23	1.89
5741981--5742332	75	4.7	74	84	5	413	41	22	13	22	1.88
5741981--5742332	150	2.4	150	83	3	467	41	22	13	22	1.88
5742205--5742521	108	2.9	107	82	5	373	41	19	16	23	1.90
5742400--5742478	40	2.0	40	87	0	113	48	16	20	15	1.82
5742217--5742553	115	3.0	114	83	3	400	40	18	17	23	1.91
5742471--5742656	42	4.7	41	71	16	131	38	18	15	27	1.90
5743059--5743148	35	2.6	34	80	5	110	36	12	14	36	1.84
5746102--5746146	19	2.3	20	81	11	58	31	6	0	62	1.21
5745967--5746509	200	2.6	206	80	11	621	36	13	6	44	1.70
5746660--5746704	14	3.2	15	79	20	53	71	0	0	28	0.87
5747613--5747664	12	4.4	11	75	15	50	80	0	3	15	0.85
5747618--5747663	24	2.0	23	83	12	58	78	0	4	17	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5747603--5747664	15	4.3	14	78	11	54	80	0	6	12	0.89
5747614--5747665	20	2.7	20	79	11	63	78	0	3	17	0.89
5747613--5747665	24	2.3	23	78	18	56	79	0	3	16	0.88
5752728--5752939	58	3.7	57	86	5	266	44	6	14	35	1.70
5752729--5752939	114	1.8	115	84	5	293	44	6	14	35	1.70
5757162--5757241	31	2.6	31	76	13	85	73	0	17	8	1.07
5758462--5758964	41	12.1	41	90	3	767	22	16	24	36	1.94
5758462--5758964	209	2.4	205	90	3	776	22	16	24	36	1.94
5758969--5759001	14	2.5	13	90	9	57	90	9	0	0	0.44
5758965--5759196	116	2.0	117	94	0	412	40	13	14	31	1.85
5758969--5759222	116	2.2	114	88	2	391	45	12	12	28	1.80
5759377--5759449	21	3.3	22	72	14	62	20	4	5	69	1.25
5762431--5762642	114	1.8	115	85	4	302	44	5	13	36	1.66
5762430--5762642	56	3.7	57	85	3	275	45	5	13	36	1.66
5764368--5764413	19	2.4	19	77	0	56	28	10	17	43	1.82
5766449--5766573	64	2.0	61	79	4	133	48	2	4	44	1.34
5773450--5774058	301	2.0	300	91	2	981	34	14	14	35	1.87
5779986--5780046	21	2.8	21	83	16	72	49	0	0	50	1.00
5787821--5787851	15	2.1	15	100	0	62	0	32	6	61	1.21
5788095--5788130	2	18.0	2	94	0	63	50	47	0	2	1.15
5791700--5791778	37	2.3	35	79	12	90	32	2	12	51	1.53
5791708--5791782	37	2.0	37	92	0	123	32	2	12	53	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5793344--5793398	22	2.5	23	79	8	69	43	0	0	56	0.99
5793809--5793860	22	2.4	22	83	6	70	36	0	0	63	0.95
5793811--5793861	23	2.3	22	83	10	59	37	0	0	62	0.95
5804667--5804718	23	2.3	23	80	3	61	44	1	0	53	1.11
5806278--5806310	17	1.9	17	93	0	57	48	0	12	39	1.40
5811373--5811483	56	2.0	56	90	0	177	48	11	9	30	1.70
5812155--5812202	17	2.8	18	78	12	64	31	0	2	66	1.03
5812271--5812299	14	2.0	15	93	6	51	34	0	0	65	0.93
5812271--5812300	15	2.0	15	93	0	51	36	0	0	63	0.95
5812518--5812589	29	2.4	30	80	15	87	48	2	0	48	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117