genome.fa.s90.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  109  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19805661--19805713	26	2.0	26	92	0	88	28	18	24	28	1.98
19808364--19808441	26	3.0	26	88	0	120	28	21	20	29	1.98
19809173--19809251	26	3.0	25	87	7	113	27	21	22	27	1.99
19809225--19809592	158	2.3	159	84	4	458	22	30	28	18	1.98
19811337--19811415	26	3.0	26	92	0	122	27	17	24	30	1.97
19811399--19811757	159	2.3	159	86	0	468	23	30	27	19	1.98
19813328--19813383	26	2.2	26	90	0	85	28	10	25	35	1.89
19811549--19814399	900	3.2	899	84	2	3658	25	24	24	25	2.00
19814228--19814279	26	2.0	25	92	3	86	26	15	26	30	1.96
19813626--19815178	777	2.0	777	89	2	2384	25	23	23	27	2.00
19815907--19815959	26	2.0	26	96	0	97	28	20	24	26	1.99
19816810--19816862	26	2.0	26	92	0	88	28	18	24	28	1.98
19814403--19819684	903	5.9	901	87	2	7313	25	24	24	26	2.00
19819509--19819561	26	2.0	26	96	0	97	26	18	26	28	1.98
19820253--19820305	26	2.0	26	88	0	79	26	20	24	28	1.99
19819685--19824310	903	5.1	902	87	1	6122	25	23	24	26	2.00
19822060--19822115	26	2.2	26	86	0	76	30	16	21	32	1.95
19823858--19823910	26	2.0	26	88	0	79	28	20	22	28	1.99
19824323--19824375	26	2.0	26	96	0	97	28	20	24	26	1.99
19825211--19825263	26	2.0	26	88	0	79	32	20	20	26	1.98
19826113--19826165	26	2.0	26	100	0	106	26	16	26	30	1.97
19824320--19828837	903	5.0	896	87	2	6158	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19827016--19827068	26	2.0	26	96	0	97	28	20	24	26	1.99
19827913--19827964	26	2.0	26	96	0	95	26	21	25	26	1.99
19828089--19829547	710	2.0	711	88	2	2158	26	22	23	27	2.00
19829521--19829573	26	2.0	26	96	0	97	26	18	26	28	1.98
19828784--19833186	902	5.0	885	83	6	5376	25	23	24	25	2.00
19832172--19832224	26	2.0	26	96	0	97	26	18	26	28	1.98
19828784--19833192	897	5.0	895	84	4	5757	25	23	24	25	2.00
19833069--19833121	26	2.0	26	92	0	88	28	18	24	28	1.98
19834457--19834509	26	2.0	26	96	0	97	26	18	26	28	1.98
19835371--19835426	26	2.2	26	93	0	94	30	19	21	28	1.98
19836274--19836326	26	2.0	26	88	0	79	28	20	22	28	1.99
19833591--19846087	892	14.0	903	85	3	15240	25	23	24	25	2.00
19837178--19837230	26	2.0	26	96	0	97	26	18	26	28	1.98
19838074--19838124	26	2.0	26	96	0	93	29	15	29	25	1.96
19843389--19843441	26	2.0	26	96	0	97	26	18	26	28	1.98
19844282--19844334	26	2.0	26	96	0	97	26	18	26	28	1.98
19846478--19846530	26	2.0	26	92	0	88	28	18	26	26	1.98
19846085--19847955	880	2.1	882	84	5	2430	25	23	25	25	2.00
19847497--19848417	464	2.0	465	87	3	1318	25	20	23	30	1.98
19848718--19848770	26	2.0	26	92	0	88	26	20	26	26	1.99
19849605--19849657	26	2.0	26	100	0	106	26	20	26	26	1.99
19850507--19856255	881	6.5	883	87	4	6849	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19855781--19855833	26	2.0	26	92	0	88	30	20	22	26	1.98
19857909--19857987	26	3.0	26	92	0	131	26	17	27	27	1.98
19858805--19858855	26	2.0	26	92	0	84	31	17	25	25	1.97
19859700--19859749	26	1.9	26	95	0	91	26	22	28	24	1.99
19860610--19860660	26	2.0	26	88	0	75	25	13	29	31	1.94
19861510--19861562	26	2.0	26	96	0	97	26	18	26	28	1.98
19857521--19867746	895	11.5	899	84	5	12242	25	23	24	25	2.00
19865064--19865116	26	2.0	26	92	7	90	26	16	26	30	1.97
19871284--19872472	597	2.0	588	89	3	1794	26	20	23	29	1.99
19872627--19872679	26	2.0	26	85	0	70	33	16	24	24	1.96
19873646--19873698	26	2.0	26	100	0	106	26	20	26	26	1.99
19874544--19874595	26	2.0	26	92	3	88	28	21	25	25	1.99
19875418--19875470	26	2.0	26	85	0	70	28	18	24	28	1.98
19873619--19878859	899	5.9	873	87	4	6543	25	23	25	25	2.00
19876317--19876369	26	2.0	26	88	0	79	24	16	28	30	1.97
19877218--19877270	26	2.0	26	88	0	79	26	15	26	32	1.95
19878757--19879112	195	1.8	195	87	1	534	25	28	25	20	1.99
19880062--19880114	26	2.0	26	88	0	79	28	20	20	30	1.98
19880339--19880384	20	2.3	20	96	0	83	15	4	54	26	1.59
19880963--19881015	26	2.0	26	92	0	88	26	16	26	30	1.97
19881864--19881916	26	2.0	26	88	0	79	24	18	28	28	1.98
19882770--19882822	26	2.0	26	96	0	97	28	13	26	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19883661--19883716	26	2.2	26	100	0	112	26	19	25	28	1.99
19879201--19886459	892	8.1	889	85	5	8613	25	24	24	25	2.00
19884553--19884608	26	2.2	26	100	0	112	26	19	25	28	1.99
19886335--19886387	26	2.0	26	92	0	88	28	20	22	28	1.99
19887031--19887083	26	2.0	27	92	3	90	32	20	24	22	1.98
19885755--19887851	691	3.0	689	89	2	3009	26	24	22	26	2.00
19887727--19887779	26	2.0	26	88	0	79	26	18	24	30	1.98
19890402--19890454	26	2.0	26	92	7	90	26	18	28	26	1.98
19887148--19892906	897	6.5	890	84	5	7297	25	23	24	26	2.00
19892153--19892203	26	2.0	26	92	0	84	29	13	27	29	1.94
19894584--19894660	26	3.0	26	84	0	100	27	15	24	32	1.95
19892974--19898701	931	6.4	916	83	7	6456	25	23	24	26	2.00
19895494--19895545	26	2.0	26	92	0	86	26	19	25	28	1.98
19896395--19896447	26	2.0	26	85	0	70	28	18	26	26	1.98
19899090--19903222	854	4.8	851	84	5	5022	25	23	24	26	2.00
19901409--19901461	26	2.0	26	88	0	79	26	18	24	30	1.98
19901868--19901900	10	3.4	10	95	4	59	15	18	9	57	1.63
19902121--19902151	12	2.6	12	100	0	62	38	19	29	12	1.89
19904506--19904558	26	2.0	26	85	0	70	30	16	22	30	1.96
19905407--19905459	26	2.0	26	100	0	106	26	20	26	26	1.99
19906301--19906353	26	2.0	26	96	0	97	26	15	26	32	1.95
19903655--19910004	904	7.2	885	82	6	6573	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19908092--19908141	26	1.9	26	91	0	82	32	22	24	22	1.98
19909793--19909845	26	2.0	26	96	0	97	26	18	26	28	1.98
19908298--19910004	865	2.0	876	82	9	1702	24	23	24	27	2.00
19909769--19910181	185	2.2	185	85	0	565	21	28	28	21	1.99
19911843--19911898	26	2.2	26	93	0	94	28	17	23	30	1.97
19912746--19912798	26	2.0	26	100	0	106	26	20	26	26	1.99
19910489--19914735	901	4.8	895	85	4	5642	25	24	25	25	2.00
19914526--19914575	26	1.9	26	91	0	82	32	14	28	26	1.94
19914709--19914761	26	2.0	26	88	0	79	30	18	24	26	1.98
19914495--19914920	185	2.3	185	88	3	633	22	27	28	20	1.99
19915591--19915642	26	2.0	26	96	0	95	28	19	26	25	1.98
19917357--19917409	26	2.0	26	92	0	88	26	16	26	30	1.97
19918961--19919013	26	2.0	26	100	0	106	26	20	26	26	1.99
19917613--19918939	719	1.9	712	90	2	1959	26	22	22	28	1.99
19919831--19919881	26	2.0	26	96	0	93	25	21	27	25	1.99
19920726--19920778	26	2.0	26	100	0	106	26	20	26	26	1.99
19918335--19926271	906	9.0	901	85	4	9663	25	24	24	25	2.00
19924259--19924309	26	2.0	26	84	0	66	27	19	29	23	1.98
19922482--19926093	904	4.0	904	87	1	5027	25	24	24	25	2.00
19925163--19925215	26	2.0	26	96	0	97	28	20	24	26	1.99
19926038--19926421	159	2.4	159	86	3	515	21	29	27	20	1.98
19927115--19927168	26	2.1	26	89	0	81	25	14	25	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19927947--19927999	26	2.0	26	85	0	70	26	18	24	30	1.98
19928839--19928891	26	2.0	26	85	0	70	28	20	20	30	1.98
19930995--19931063	26	2.7	26	97	0	129	28	20	24	26	1.99
19931908--19931960	26	2.0	26	92	0	88	28	18	24	28	1.98
19932806--19932857	26	2.0	25	92	3	86	28	19	23	28	1.98
19933702--19933754	26	2.0	26	92	0	88	26	16	28	28	1.97
19934605--19934657	26	2.0	26	96	0	97	26	18	26	28	1.98
19935501--19935553	26	2.0	26	88	0	79	28	20	22	28	1.99
19930195--19936418	905	6.9	896	86	3	8127	25	24	24	25	2.00
19937162--19937214	26	2.0	26	92	0	88	26	22	24	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117