genome.fa.s90.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  82  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16231157--16231208	26	2.0	26	88	7	79	34	26	11	26	1.91
16229186--16233851	878	5.2	885	86	4	6090	25	24	24	25	2.00
16232926--16232977	25	2.0	26	88	3	79	28	23	21	26	1.99
16235426--16235481	26	2.2	26	93	0	94	32	25	16	26	1.96
16233849--16235952	897	2.4	888	88	2	3074	26	24	23	25	2.00
16238151--16238201	26	2.0	26	92	7	86	29	27	15	27	1.96
16241798--16241848	26	2.0	26	96	0	93	29	29	13	27	1.94
16243574--16243626	26	2.0	26	88	0	79	30	20	20	28	1.98
16238955--16247027	902	9.1	896	84	4	10105	25	25	23	25	2.00
16244476--16244528	26	2.0	26	92	0	88	28	24	18	28	1.98
16246267--16248422	690	3.1	688	86	5	2901	26	24	23	26	2.00
16248535--16248586	26	2.0	26	92	0	86	26	23	19	30	1.98
16249978--16250030	26	2.0	26	100	0	106	26	26	20	26	1.99
16250877--16250927	26	2.0	26	96	0	93	27	25	15	31	1.96
16249457--16253065	879	4.1	874	85	5	4466	25	24	24	25	2.00
16252633--16252683	26	2.0	26	92	0	84	31	29	13	25	1.94
16254519--16254571	26	2.0	26	92	0	88	24	20	26	28	1.99
16257029--16257061	11	3.0	11	95	0	57	18	33	27	21	1.96
16258028--16258080	26	2.0	26	92	0	88	28	18	26	26	1.98
16260694--16260743	26	1.9	26	84	8	66	32	16	24	28	1.96
16254619--16292936	896	42.7	896	78	8	29889	25	24	24	25	2.00
16261587--16261639	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16266038--16266089	26	2.0	25	85	3	68	28	21	25	25	1.99
16267841--16267892	26	2.0	26	92	0	86	30	19	23	26	1.98
16264270--16269768	901	6.1	903	84	4	6889	25	24	24	25	2.00
16269627--16269679	26	2.0	26	96	0	97	28	20	24	26	1.99
16269859--16269911	26	2.0	26	88	0	79	26	18	24	30	1.98
16269545--16269997	232	2.0	232	86	0	629	24	27	28	19	1.98
16271668--16271719	26	2.0	26	100	0	104	26	19	26	26	1.99
16274340--16274392	26	2.0	26	100	0	106	26	20	26	26	1.99
16276102--16276152	26	2.0	26	96	0	93	31	19	25	23	1.98
16279602--16279654	26	2.0	26	88	0	79	26	18	24	30	1.98
16280735--16280764	4	7.5	4	92	0	51	3	26	70	0	1.03
16280731--16280764	12	2.8	12	95	0	59	5	26	67	0	1.13
16281402--16281454	26	2.0	26	92	0	88	28	22	22	26	1.99
16282296--16282348	26	2.0	26	92	0	88	26	18	24	30	1.98
16279532--16292914	898	15.0	898	86	3	17443	25	24	24	25	2.00
16285836--16285895	26	2.4	26	88	5	97	25	16	25	33	1.96
16286742--16286794	26	2.0	26	96	0	97	28	20	24	26	1.99
16288522--16288574	26	2.0	26	100	0	106	26	20	26	26	1.99
16289411--16289463	26	2.0	26	100	0	106	26	20	26	26	1.99
16290309--16290361	26	2.0	26	96	0	97	26	18	26	28	1.98
16291212--16291261	26	2.0	25	92	4	82	30	18	24	28	1.97
16292107--16292159	26	2.0	26	88	0	79	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16295557--16295609	26	2.0	26	96	0	97	28	20	24	26	1.99
16293759--16297424	894	4.1	897	89	1	5472	25	24	24	25	2.00
16297341--16297393	26	2.0	26	96	0	97	28	20	24	26	1.99
16298084--16298136	26	2.0	26	89	7	81	26	15	26	32	1.95
16298971--16299023	26	2.0	26	96	0	97	26	22	26	24	2.00
16299840--16299892	26	2.0	26	88	0	79	30	20	18	30	1.97
16300716--16300766	26	2.0	26	96	0	93	27	13	29	29	1.94
16301620--16301672	26	2.0	26	92	0	88	26	20	24	28	1.99
16303782--16303834	26	2.0	26	92	0	88	26	16	26	30	1.97
16302650--16305421	898	3.1	892	86	3	3738	24	23	25	26	2.00
16304731--16306109	688	2.0	688	89	1	2082	25	21	24	28	1.99
16306266--16306321	26	2.2	26	90	6	87	28	16	23	32	1.96
16305419--16308079	891	3.0	879	84	5	3409	25	24	24	25	2.00
16308678--16308756	26	3.0	26	98	0	149	29	20	24	26	1.99
16308077--16312444	912	4.8	878	84	6	4769	25	23	24	26	2.00
16310464--16310516	26	2.0	26	92	0	88	28	18	24	28	1.98
16312564--16312619	26	2.2	26	96	0	103	28	17	25	28	1.98
16312199--16312718	281	1.9	280	87	1	772	24	27	28	19	1.98
16314369--16314421	26	2.0	26	96	0	97	26	18	26	28	1.98
16312472--16320510	902	9.0	904	85	3	10366	25	24	24	25	2.00
16317029--16317081	26	2.0	26	88	0	79	26	22	24	26	2.00
16317923--16317975	26	2.0	26	88	0	79	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16318833--16318885	26	2.0	26	96	0	97	28	20	24	26	1.99
16316154--16320511	906	4.8	906	86	2	5806	25	24	24	25	2.00
16323022--16323100	26	3.1	25	85	5	113	30	18	24	26	1.98
16323952--16324001	26	2.0	26	96	4	93	28	24	24	24	2.00
16327518--16327569	26	2.0	26	88	3	79	28	23	19	28	1.98
16329303--16329355	26	2.0	26	92	0	88	30	20	22	26	1.98
16331918--16331970	26	2.0	26	88	0	79	26	18	26	28	1.98
16332831--16332880	26	1.9	26	91	0	82	26	20	28	26	1.99
16336127--16336180	26	2.1	26	96	0	99	27	20	25	25	1.99
16337047--16337097	26	2.0	26	96	0	93	29	19	25	25	1.99
16335693--16391035	900	61.3	902	76	10	40571	25	23	24	25	2.00
16339729--16339799	26	2.7	26	95	0	124	30	25	15	28	1.96
16341517--16341569	26	2.0	26	96	0	97	28	20	24	26	1.99
16342417--16342469	26	2.0	26	96	0	97	30	22	20	26	1.98
16343313--16343364	26	2.0	26	88	0	77	30	17	25	26	1.97
16343397--16343629	117	2.0	117	86	0	322	20	27	30	21	1.98
16345219--16345271	26	2.0	26	85	7	72	28	18	26	26	1.98
16346992--16347044	26	2.0	26	88	0	79	26	18	22	32	1.97
16348688--16348714	11	2.5	11	100	0	54	14	40	25	18	1.89
16348801--16348851	25	2.0	26	96	3	95	25	19	27	27	1.99
16349218--16349267	26	1.9	26	87	0	73	22	12	12	54	1.69
16350590--16350642	26	2.0	26	96	0	97	26	22	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16343534--16354117	899	11.9	901	84	5	12799	25	23	24	25	2.00
16351488--16351540	26	2.0	26	96	0	97	28	20	24	26	1.99
16353223--16353275	26	2.0	26	92	0	88	30	20	22	26	1.98
16355352--16355403	26	2.0	26	84	0	68	26	15	26	30	1.96
16354119--16356352	893	2.5	896	85	4	2975	25	24	24	24	2.00
16356257--16356309	26	2.0	26	88	0	79	26	18	24	30	1.98
16356987--16357042	26	2.2	26	87	6	78	30	19	21	28	1.98
16358787--16358838	26	2.0	26	96	0	95	26	17	26	28	1.97
16356283--16391035	903	38.6	891	77	9	27470	25	23	24	26	2.00
16359671--16359726	26	2.2	26	90	0	85	30	17	23	28	1.97
16356283--16364157	894	8.9	886	83	6	9148	25	24	24	25	2.00
16363191--16363243	26	2.0	26	96	0	97	26	18	26	28	1.98
16364095--16364147	26	2.0	26	96	0	97	28	20	26	24	1.99
16365430--16365480	26	2.0	26	88	0	75	31	13	25	29	1.94
16366485--16366537	26	2.0	26	92	0	88	28	18	26	26	1.98
16368125--16368177	26	2.0	26	85	7	72	22	18	28	30	1.98
16369408--16369458	26	2.0	26	88	0	75	21	9	17	50	1.74
16369882--16369934	26	2.0	26	85	0	70	26	16	24	32	1.97
16370768--16370820	26	2.0	26	96	0	97	28	20	24	26	1.99
16373455--16373507	27	2.0	27	88	3	81	30	16	24	28	1.97
16376990--16377042	26	2.0	26	100	0	106	26	20	26	26	1.99
16377829--16377881	26	2.0	26	85	7	72	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16378266--16378322	26	2.3	25	84	6	71	22	10	17	49	1.77
16378733--16378785	26	2.0	26	88	0	79	30	22	22	24	1.99
16381385--16381437	26	2.0	26	96	0	97	28	18	26	26	1.98
16383177--16383229	26	2.0	26	96	0	97	28	20	24	26	1.99
16384067--16384117	26	2.0	26	96	0	93	27	23	23	25	2.00
16384971--16385023	26	2.0	26	88	0	79	30	18	22	28	1.98
16385857--16385909	26	2.0	26	92	0	88	26	18	24	30	1.98
16377734--16391035	889	15.0	895	84	5	15852	25	24	24	25	2.00
16389389--16389441	26	2.0	26	92	0	88	26	20	26	26	1.99
16390273--16390325	26	2.0	26	85	0	70	28	18	22	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117