genome.fa.s90.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  26  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6994573--6994612	2	20.0	2	94	0	71	0	47	0	52	1.00
6999273--6999316	22	2.0	22	82	13	54	29	4	6	59	1.44
7000192--7000242	11	4.9	10	79	15	50	0	21	1	76	0.88
7000192--7000263	23	3.1	23	73	9	65	1	22	2	73	1.04
7000199--7000246	16	3.1	16	76	11	55	0	22	4	72	1.01
7001180--7001209	12	2.5	12	100	0	60	26	0	6	66	1.16
7002468--7002510	24	1.9	22	86	13	61	58	0	0	41	0.98
7007968--7008001	17	2.1	16	88	5	50	64	0	2	32	1.08
7008001--7008047	24	2.0	24	83	8	60	55	0	0	44	0.99
7008797--7008831	18	1.9	18	88	0	52	54	0	5	40	1.24
7008805--7008886	21	4.1	21	72	19	68	56	1	2	40	1.20
7008790--7008877	21	4.2	21	74	17	69	59	1	2	37	1.18
7010779--7010835	13	4.5	13	75	20	57	43	12	8	35	1.73
7011073--7011217	21	7.1	21	76	10	131	52	11	6	30	1.61
7011062--7011217	41	3.9	41	87	1	208	52	11	5	30	1.61
7011073--7011247	21	9.1	19	73	12	108	52	10	6	30	1.61
7018142--7018213	5	13.4	5	78	18	58	58	0	1	40	1.07
7018144--7018211	23	3.1	21	82	14	75	61	0	1	36	1.05
7018152--7018214	23	2.8	22	83	7	81	57	0	1	41	1.08
7018224--7018294	26	2.8	26	85	6	74	45	0	0	54	0.99
7018240--7018289	13	3.9	13	77	12	59	42	0	0	58	0.98
7018258--7018295	8	4.9	8	83	3	51	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7023121--7023150	16	1.9	16	93	6	53	73	0	0	26	0.84
7024054--7024120	34	2.0	34	90	0	107	38	10	11	38	1.77
7025486--7025529	11	3.9	11	79	5	52	29	2	0	68	1.02
7025603--7025649	12	3.8	12	78	16	51	57	4	2	36	1.30
7025592--7025651	24	2.4	25	78	15	79	55	3	1	40	1.27
7026222--7026280	29	2.0	31	81	18	74	40	6	3	49	1.46
7026222--7026287	29	2.3	27	78	14	64	42	7	3	46	1.47
7026874--7026908	17	2.1	17	89	5	54	14	11	22	51	1.74
7027996--7028036	21	2.0	21	90	0	64	17	26	24	31	1.97
7028019--7028097	38	2.2	36	81	6	88	17	21	21	39	1.93
7028834--7028901	29	2.3	29	85	7	84	32	2	2	61	1.26
7028834--7028937	30	3.4	30	77	12	104	30	1	4	62	1.27
7048959--7049029	30	2.3	30	97	2	133	52	12	16	18	1.75
7054452--7054524	31	2.4	31	100	0	146	53	12	16	17	1.73
7054884--7055322	219	2.0	219	96	0	815	22	23	24	28	1.99
7057454--7057507	21	2.6	22	85	5	60	42	16	20	20	1.89
7059726--7059782	27	2.2	26	87	3	78	56	0	3	40	1.17
7060285--7060339	19	2.8	20	81	8	60	54	7	1	36	1.39
7060307--7060354	10	5.0	9	80	12	51	54	4	0	41	1.20
7060907--7060970	16	4.0	16	72	11	51	50	0	0	50	1.00
7061279--7061320	18	2.3	20	80	19	56	59	0	0	40	0.97
7061283--7061317	17	1.9	17	88	11	52	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7074410--7074444	17	1.9	19	88	11	56	0	40	0	60	0.97
7085763--7085793	16	1.9	16	100	0	62	45	19	3	32	1.66
7088052--7088089	20	1.9	20	88	0	58	63	0	0	36	0.95
7095097--7095164	28	2.4	29	90	7	106	45	0	1	52	1.09
7095716--7095783	31	2.2	31	82	12	79	48	1	0	50	1.10
7095772--7095855	27	3.1	27	75	3	80	41	2	0	55	1.12
7095854--7095885	17	2.0	17	88	11	50	40	6	0	53	1.26
7096724--7096771	22	2.2	21	85	14	62	50	0	0	50	1.00
7098414--7098491	15	4.9	16	70	23	58	32	0	1	66	1.00
7098412--7098491	31	2.5	32	76	10	92	32	0	1	66	1.00
7098425--7098494	38	1.9	35	85	8	95	31	0	2	65	1.07
7098508--7098553	19	2.5	19	82	3	58	54	0	0	45	0.99
7103290--7103331	14	2.8	15	80	19	52	71	0	0	28	0.86
7103455--7103520	32	2.1	32	97	0	123	42	6	13	37	1.69
7104035--7104082	17	2.8	18	78	12	57	52	4	0	43	1.20
7104591--7104633	18	2.4	18	80	3	52	62	0	6	30	1.21
7104591--7104632	17	2.3	18	84	8	50	64	0	4	30	1.14
7105472--7105559	9	9.7	9	71	15	56	73	3	2	20	1.08
7105484--7105547	7	9.6	7	75	16	55	70	3	3	23	1.16
7105474--7105559	32	2.7	31	82	10	104	73	3	2	20	1.10
7105626--7105696	29	2.4	28	86	9	97	19	56	7	16	1.63
7106520--7106556	13	2.8	13	91	0	56	27	43	24	5	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7118268--7118306	17	2.3	17	90	0	60	82	0	7	10	0.86
7119035--7119668	49	13.0	49	79	6	651	27	13	22	36	1.92
7119035--7119659	96	6.4	96	81	5	682	27	13	22	36	1.92
7119843--7119896	24	2.2	26	90	6	85	72	7	3	16	1.22
7119851--7119925	9	8.3	9	73	5	62	73	6	2	17	1.17
7119851--7119926	37	2.1	35	85	7	98	73	6	2	17	1.16
7119984--7120056	29	2.5	29	86	8	96	21	52	6	19	1.69
7121468--7121498	12	2.6	12	94	0	53	51	0	0	48	1.00
7122828--7122863	11	3.2	11	92	4	54	36	0	2	61	1.11
7122892--7123003	27	4.1	27	66	19	70	52	0	1	45	1.11
7122924--7123064	21	7.2	20	68	20	79	49	1	1	47	1.19
7122924--7122970	22	2.2	21	88	7	69	46	0	2	51	1.13
7122958--7123000	16	2.7	16	77	0	50	60	0	0	39	0.97
7122904--7123099	94	2.1	93	89	2	313	51	1	1	46	1.14
7123033--7123093	15	4.1	15	78	6	61	54	0	0	45	1.00
7123257--7123282	11	2.4	11	100	0	52	61	23	0	15	1.33
7123685--7123748	14	4.7	15	71	23	52	56	0	0	43	0.99
7148997--7149025	2	14.5	2	100	0	58	51	0	0	48	1.00
7152016--7152104	21	4.2	20	83	8	97	38	5	6	49	1.53
7152016--7152104	42	2.1	42	83	4	108	38	5	6	49	1.53
7152099--7152140	22	1.9	22	90	0	66	33	0	11	54	1.37
7152439--7152585	66	2.2	66	85	0	195	41	8	3	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7152412--7152572	22	7.3	22	76	1	144	42	9	3	44	1.54
7154215--7154456	122	2.0	123	92	2	407	33	2	10	52	1.50
7154484--7154678	99	2.0	99	86	2	275	45	10	10	33	1.73
7158038--7158079	2	21.0	2	100	0	84	50	0	0	50	1.00
7163062--7163104	2	21.5	2	100	0	86	51	0	0	48	1.00
7170604--7170675	22	3.2	22	78	9	74	33	1	1	63	1.11
7181764--7181803	12	3.5	12	80	13	57	40	7	0	52	1.30
7181761--7181803	22	2.0	22	100	0	86	39	9	0	51	1.34
7193017--7193079	31	2.0	31	81	6	74	39	14	3	42	1.61
7195302--7195375	37	2.0	37	89	0	112	27	10	13	48	1.75
7196623--7196669	4	11.0	4	79	20	51	23	0	2	74	0.93
7196623--7196669	10	5.5	8	79	20	51	23	0	2	74	0.93
7196623--7196669	14	3.6	13	84	15	62	23	0	2	74	0.93
7196614--7196669	27	2.1	27	83	12	71	23	3	3	69	1.20
7196847--7196871	9	2.8	9	100	0	50	20	0	0	80	0.72
7197324--7197370	24	2.0	24	87	8	69	31	2	2	63	1.18
7205228--7205266	20	1.9	21	94	5	71	51	0	2	46	1.14
7205318--7205389	36	2.0	37	83	8	94	52	1	0	45	1.09
7206318--7206387	32	2.2	32	82	5	81	52	1	2	42	1.24
7206727--7206783	30	1.9	30	85	0	78	21	3	31	43	1.69
7206790--7206917	14	9.1	14	71	8	80	21	3	26	48	1.67
7206789--7206893	42	2.5	42	88	0	156	21	3	25	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7207232--7207259	3	9.3	3	100	0	56	32	0	0	67	0.91
7207375--7207425	22	2.5	20	75	18	59	23	3	5	66	1.30
7208512--7208568	18	3.2	18	76	0	60	75	8	1	14	1.11
7209208--7209254	21	2.2	21	84	3	58	29	0	14	55	1.40
7209613--7209736	16	7.9	15	74	12	99	50	29	0	19	1.53
7209619--7209648	15	2.0	15	93	0	51	50	20	3	26	1.64
7209614--7209757	31	4.7	30	78	8	130	50	28	0	20	1.54
7209636--7209748	15	7.3	15	76	11	86	50	28	0	20	1.54
7209701--7209814	51	2.3	50	85	10	144	50	31	0	17	1.46
7211614--7211646	9	3.3	10	91	8	50	87	3	9	0	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117