genome.fa.s90.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  93  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17711242--17711374	4	32.5	4	66	19	53	28	1	3	66	1.18
17711239--17711383	39	3.8	39	71	22	105	28	1	3	66	1.16
17711237--17711363	43	2.9	42	71	18	105	28	1	4	65	1.22
17711328--17711384	17	3.2	17	82	12	53	31	1	1	64	1.13
17712388--17712427	17	2.4	16	84	8	53	22	5	0	72	1.04
17712414--17712461	17	2.8	17	78	9	53	12	6	2	79	1.01
17712414--17712471	14	4.2	14	76	8	57	13	6	1	77	1.05
17712437--17712476	14	2.5	17	73	23	50	15	10	0	75	1.05
17712479--17712773	58	5.0	59	86	6	402	44	7	12	34	1.72
17712479--17712773	118	2.5	118	87	4	427	44	7	12	34	1.72
17712565--17712656	28	3.1	28	62	27	64	40	6	16	36	1.74
17715947--17715999	26	2.0	26	92	7	90	30	20	22	26	1.98
17716847--17716899	26	2.0	26	96	0	97	26	18	26	28	1.98
17714371--17721595	903	8.1	901	86	4	9024	25	24	24	25	2.00
17718654--17718706	26	2.0	26	96	0	97	26	20	24	28	1.99
17719558--17719610	26	2.0	26	96	0	97	26	22	24	26	2.00
17721343--17721392	26	1.9	26	100	0	100	28	20	26	26	1.99
17721898--17721950	26	2.0	26	92	0	88	30	18	26	24	1.98
17722796--17722846	26	2.0	26	88	0	75	29	15	29	25	1.96
17722579--17723265	368	1.9	368	89	1	1072	25	30	28	16	1.96
17727494--17727553	26	2.4	26	86	5	88	28	18	25	28	1.98
17728516--17728568	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17730711--17730760	26	1.9	26	91	0	82	28	10	12	50	1.71
17732055--17732107	26	2.0	26	92	0	88	28	18	24	28	1.98
17732954--17733006	26	2.0	26	92	0	88	28	18	24	28	1.98
17733390--17733439	26	1.9	26	87	0	73	26	10	14	50	1.73
17733860--17733911	26	2.0	26	92	0	86	26	15	26	30	1.96
17729407--17734586	899	5.8	897	87	3	6631	25	23	25	25	2.00
17734592--17734641	26	1.9	26	92	8	84	28	20	24	28	1.99
17733857--17735324	738	2.0	732	88	2	2172	25	21	25	27	1.99
17736368--17736419	26	2.0	26	92	0	86	26	15	23	34	1.94
17734592--17739862	899	5.9	888	84	4	6506	25	23	24	25	2.00
17737268--17737320	26	2.0	26	88	0	79	26	18	26	28	1.98
17738167--17738243	26	3.0	26	88	0	127	29	15	28	25	1.96
17738398--17738429	12	2.7	12	100	0	64	15	25	59	0	1.36
17740580--17740632	26	2.0	26	96	0	97	26	18	26	28	1.98
17742777--17742829	26	2.0	26	96	0	97	28	16	24	30	1.97
17743675--17743724	26	1.9	26	91	0	82	28	18	26	28	1.98
17742069--17743907	898	2.1	889	87	2	2650	25	23	25	26	2.00
17744369--17744421	26	2.0	26	85	0	70	26	16	26	30	1.97
17743236--17744590	694	2.0	692	84	4	1818	26	25	24	23	2.00
17745921--17745973	26	2.0	26	88	0	79	30	18	22	28	1.98
17744865--17746164	654	2.0	653	86	2	1833	26	26	24	22	2.00
17748423--17748475	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17749333--17749382	26	1.9	26	91	0	82	28	20	26	26	1.99
17750233--17750284	26	2.0	25	88	3	77	30	13	26	28	1.94
17751121--17751173	26	2.0	26	96	0	97	26	20	24	28	1.99
17747097--17765637	903	20.8	896	85	4	22870	25	24	24	25	2.00
17753775--17753827	26	2.0	26	96	0	97	26	18	26	28	1.98
17756476--17756528	26	2.0	26	96	0	97	32	20	20	26	1.98
17760016--17760067	26	2.0	26	92	0	86	28	17	25	28	1.97
17760922--17760971	25	2.0	25	100	0	100	28	20	28	24	1.99
17761825--17761874	25	2.0	25	100	0	100	28	20	28	24	1.99
17762728--17762780	26	2.0	26	96	0	97	24	20	28	26	1.99
17765694--17765746	26	2.0	26	92	0	88	26	20	24	28	1.99
17765317--17765929	322	1.9	320	81	6	726	22	27	29	20	1.99
17770070--17770122	26	2.0	26	92	0	88	28	22	22	26	1.99
17770303--17770337	12	2.9	12	91	0	61	8	22	65	2	1.34
17771845--17771900	25	2.3	25	93	3	96	26	19	23	30	1.98
17771199--17772621	732	1.9	726	89	3	2070	25	23	23	27	2.00
17774338--17774393	26	2.2	26	96	0	103	28	19	23	28	1.98
17771874--17781555	899	10.8	885	73	13	4799	25	24	24	25	2.00
17777857--17777887	14	2.2	14	94	0	53	19	29	32	19	1.96
17776470--17784567	877	9.2	873	84	6	9185	25	24	24	25	2.00
17778833--17778885	26	2.0	26	96	0	97	26	18	26	28	1.98
17779732--17779784	26	2.0	26	92	7	90	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17777956--17781555	899	4.0	900	91	1	5419	25	24	24	25	2.00
17780632--17780684	26	2.0	26	85	7	72	28	16	24	30	1.97
17782348--17782400	26	2.0	26	88	0	79	28	15	24	32	1.95
17784113--17784165	26	2.0	26	88	0	79	24	18	26	30	1.98
17784963--17785015	26	2.0	26	92	0	88	26	16	26	30	1.97
17785773--17785851	26	3.0	26	90	0	122	27	16	27	27	1.97
17787371--17787423	26	2.0	26	100	0	106	22	20	30	26	1.98
17787037--17790038	889	3.4	892	84	6	3943	25	24	25	25	2.00
17793413--17793488	26	2.9	26	92	0	134	28	17	26	27	1.97
17790201--17799558	901	10.5	900	84	4	11370	25	23	24	26	2.00
17797001--17797051	26	2.0	26	88	0	75	33	15	27	23	1.95
17802987--17803039	26	2.0	26	88	0	79	28	16	24	30	1.97
17803886--17803938	26	2.0	26	96	0	97	26	18	26	28	1.98
17802121--17811074	899	10.0	899	88	2	12085	25	24	24	25	2.00
17805674--17805726	26	2.0	26	96	0	97	28	20	24	26	1.99
17806572--17806624	26	2.0	26	92	0	88	30	20	22	26	1.98
17808369--17808421	26	2.0	26	92	0	88	26	22	24	26	2.00
17809272--17809324	26	2.0	26	96	0	97	28	20	24	26	1.99
17810177--17810229	26	2.0	26	92	0	88	26	18	24	30	1.98
17812413--17812465	26	2.0	26	92	0	88	28	20	22	28	1.99
17814185--17814237	26	2.0	26	92	0	88	28	18	24	28	1.98
17815056--17815109	26	2.0	27	85	3	74	25	24	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17815966--17816018	26	2.0	26	92	0	88	26	18	24	30	1.98
17817738--17817790	26	2.0	26	96	0	97	24	20	28	26	1.99
17819392--17819444	26	2.0	26	96	0	97	28	20	24	26	1.99
17820287--17820339	26	2.0	26	96	0	97	26	22	24	26	2.00
17817764--17829320	902	12.8	902	85	4	14530	25	24	25	25	2.00
17821190--17821242	26	2.0	26	96	0	97	26	18	26	28	1.98
17822078--17822161	26	3.2	26	94	1	150	26	19	27	27	1.99
17823877--17823929	26	2.0	26	96	0	97	26	22	24	26	2.00
17825687--17825738	26	2.0	26	92	0	86	26	19	25	28	1.98
17827486--17827562	26	3.0	26	98	0	145	28	19	25	25	1.99
17828404--17828456	26	2.0	26	96	0	97	26	22	24	26	2.00
17829993--17830044	26	2.0	26	92	0	86	28	17	21	32	1.96
17830893--17830945	26	2.0	26	96	0	97	26	18	26	28	1.98
17831794--17831846	26	2.0	26	96	0	97	26	15	26	32	1.95
17829282--17831988	899	3.0	897	89	1	4037	24	24	25	25	2.00
17832384--17832436	26	2.0	26	88	0	79	30	18	22	28	1.98
17831389--17832578	590	2.0	592	89	1	1803	25	26	24	22	2.00
17832618--17832651	12	2.8	12	90	0	50	14	26	58	0	1.36
17832622--17832655	12	2.8	12	90	0	50	14	26	58	0	1.36
17833306--17833358	26	2.0	26	96	0	97	28	20	24	26	1.99
17831982--17834273	904	2.5	912	86	3	3195	25	24	24	24	2.00
17834210--17834262	26	2.0	26	85	0	70	28	15	24	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17833491--17835023	740	2.1	744	90	1	2445	26	23	24	25	2.00
17834950--17835002	26	2.0	26	96	0	97	28	20	26	24	1.99
17835849--17835901	26	2.0	26	92	0	88	26	22	24	26	2.00
17836743--17836793	26	2.0	26	84	0	66	29	17	23	29	1.97
17834236--17838142	898	4.4	898	87	2	5473	25	24	24	25	2.00
17837641--17837692	26	2.0	26	84	0	68	28	17	26	26	1.97
17838464--17838515	25	2.0	25	88	3	77	26	23	23	26	2.00
17839347--17839399	26	2.0	26	89	7	81	28	18	22	30	1.98
17841124--17841176	26	2.0	26	96	0	97	26	18	26	28	1.98
17847602--17847654	26	2.0	26	96	0	97	26	22	24	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117