genome.fa.s90.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  57  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12830471--12830583	35	3.2	35	69	17	90	23	23	7	44	1.80
12830570--12830701	35	3.7	35	71	9	104	19	16	10	53	1.72
12830753--12830789	19	1.9	19	88	0	56	16	21	18	43	1.88
12831385--12831476	7	13.0	7	74	8	53	72	2	2	22	1.06
12831370--12831476	23	4.9	20	76	17	81	72	1	1	23	1.04
12831368--12831473	10	9.9	11	70	23	59	72	1	1	23	1.04
12831369--12831477	16	6.9	15	68	22	64	73	1	1	22	1.03
12833395--12833435	3	13.7	3	100	0	82	68	0	0	31	0.90
12833477--12833518	14	3.1	14	80	13	52	59	16	0	23	1.37
12834097--12834129	16	2.0	17	88	5	50	42	3	0	54	1.15
12837036--12837078	3	14.3	3	100	0	86	32	0	0	67	0.91
12837193--12837249	28	2.0	28	83	6	71	22	5	15	56	1.60
12842131--12842212	30	2.8	30	88	5	123	47	0	7	45	1.30
12845503--12845549	23	2.0	23	100	0	94	25	17	8	48	1.74
12854435--12854517	30	2.9	28	72	15	71	38	16	1	43	1.56
12854494--12854569	30	2.5	31	79	14	95	38	11	3	46	1.59
12854639--12854770	66	2.0	66	86	5	187	40	3	8	46	1.52
12855349--12855377	2	14.5	2	100	0	58	48	0	0	51	1.00
12857950--12858009	26	2.3	26	85	0	75	46	8	0	45	1.33
12858321--12858476	77	2.0	78	88	3	235	37	8	10	43	1.69
12867876--12867944	34	2.0	34	85	5	93	52	10	5	31	1.59
12868317--12868372	25	2.2	25	93	0	94	44	1	1	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12868359--12868393	16	2.3	15	90	5	52	37	0	0	62	0.95
12874062--12874095	17	2.1	17	88	5	52	61	0	8	29	1.26
12875041--12875086	24	1.9	24	86	8	67	80	4	10	4	0.99
12875040--12875080	18	2.2	19	83	12	50	80	4	12	2	0.97
12875835--12875892	14	4.1	14	81	2	62	77	1	8	12	1.06
12876958--12877012	26	2.1	27	86	10	78	14	0	21	63	1.30
12877617--12877658	20	2.0	21	86	13	61	47	0	4	47	1.23
12877604--12877658	20	2.8	20	81	13	60	45	0	7	47	1.30
12878513--12878539	3	9.0	3	100	0	54	66	0	0	33	0.92
12881123--12881148	12	2.2	12	100	0	52	50	15	19	15	1.79
12882048--12882098	19	2.7	20	78	9	61	19	9	13	56	1.65
12882645--12882684	19	2.1	19	85	0	53	20	10	32	37	1.85
12883199--12883245	24	2.0	24	86	0	67	10	10	36	42	1.74
12890174--12890218	3	14.7	3	86	4	54	28	28	2	40	1.69
12890173--12890217	22	2.0	22	86	0	63	28	26	2	42	1.67
12893181--12893420	132	1.8	131	83	10	321	41	5	10	42	1.62
12893181--12893451	132	2.1	131	80	10	297	41	5	11	41	1.65
12893655--12893747	30	3.2	29	67	14	75	35	6	17	40	1.75
12893655--12893804	57	2.6	56	82	7	169	35	6	18	40	1.75
12893722--12894254	186	2.9	185	92	2	863	34	6	21	37	1.79
12894083--12894411	165	2.0	165	86	5	461	36	5	20	37	1.76
12893897--12894601	350	2.0	352	83	6	901	35	5	21	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12894248--12894618	189	2.0	185	84	5	487	34	5	22	38	1.77
12895406--12895451	19	2.4	19	81	0	56	73	0	2	23	0.94
12898569--12898635	32	2.1	32	91	0	107	41	10	25	22	1.85
12899714--12899753	15	2.6	16	88	7	57	10	5	0	85	0.75
12899711--12899753	21	2.0	21	86	8	61	11	4	0	83	0.78
12903929--12903978	20	2.5	20	84	15	68	70	12	0	18	1.17
12904976--12905057	24	3.3	23	77	10	65	64	2	12	20	1.38
12905048--12905072	3	8.3	3	100	0	50	68	0	0	32	0.90
12905042--12905113	12	5.8	12	71	20	51	69	1	0	29	0.97
12905677--12905711	17	2.1	17	89	5	54	82	8	2	5	0.91
12909162--12909255	47	2.0	47	89	0	143	44	8	23	23	1.80
12919755--12919786	16	2.1	16	88	11	50	34	0	9	56	1.32
12935806--12935947	48	2.9	49	79	6	137	30	9	14	45	1.77
12936021--12936281	81	3.2	83	77	5	228	29	14	18	37	1.90
12936637--12936679	19	2.2	19	87	8	59	83	6	4	4	0.89
12937164--12937242	36	2.2	36	95	0	140	22	10	15	51	1.72
12945761--12945821	16	3.9	16	70	12	54	40	3	6	49	1.45
12946217--12946241	2	12.5	2	100	0	50	52	0	0	48	1.00
12947938--12947994	21	2.7	22	79	15	59	56	8	5	29	1.52
12949405--12949435	2	15.5	2	100	0	62	0	51	0	48	1.00
12950707--12950744	12	3.2	12	85	7	51	21	0	2	76	0.91
12950749--12950795	24	2.0	24	91	0	76	44	4	0	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12951832--12951856	12	2.1	12	100	0	50	56	0	0	44	0.99
12952191--12952247	25	2.3	25	81	6	71	71	1	7	19	1.17
12952226--12952283	17	3.4	16	75	15	53	77	3	3	15	1.04
12952171--12952254	25	3.3	24	69	19	64	72	1	4	21	1.10
12952171--12952267	24	4.0	23	72	18	72	74	2	4	19	1.09
12953100--12953203	3	36.0	3	73	11	83	61	3	2	31	1.28
12953100--12953172	13	5.4	13	73	14	67	60	4	1	34	1.24
12953107--12953202	19	5.1	18	76	16	63	61	4	3	31	1.30
12953138--12953187	19	2.7	19	90	3	66	68	8	0	24	1.16
12954635--12954785	44	3.4	44	79	3	151	19	15	13	51	1.76
12961027--12961054	10	2.8	10	100	0	56	7	21	17	53	1.67
12969493--12969574	14	5.5	14	73	18	76	75	1	4	18	1.04
12969522--12969574	13	3.8	13	79	16	52	75	1	3	18	1.05
12969479--12969565	24	3.5	24	76	16	81	73	1	5	19	1.10
12969498--12969574	6	12.7	6	72	13	59	75	1	5	18	1.06
12969544--12969586	19	2.3	18	80	11	50	79	0	6	13	0.93
12970326--12970422	3	35.7	3	67	19	52	61	2	2	34	1.19
12970327--12970409	5	16.2	5	78	10	53	61	0	2	36	1.09
12970425--12970464	3	13.3	3	100	0	80	35	0	0	65	0.93
12971696--12971741	18	2.6	18	80	16	60	0	15	2	82	0.76
12975123--12975157	2	17.5	2	100	0	70	51	0	0	48	1.00
12978395--12978420	7	3.7	7	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12979701--12979730	15	2.0	15	93	0	51	13	0	3	83	0.77
12979937--12979996	26	2.3	26	82	5	68	11	5	6	76	1.13
12980804--12980942	53	2.5	56	82	12	155	38	10	2	48	1.53
12983172--12983217	22	2.1	22	87	0	65	39	2	6	52	1.40
12983269--12983331	19	3.3	19	84	0	81	53	6	6	33	1.51
12983573--12983623	20	2.5	20	84	12	68	50	9	1	37	1.47
12988757--12988857	6	14.7	7	74	22	58	73	0	24	1	0.94
12988758--12988857	21	4.7	21	73	20	75	74	0	24	2	0.93
12988769--12988856	27	3.3	26	74	22	92	75	0	22	2	0.92
12990114--12990180	12	5.8	12	73	7	57	82	1	14	1	0.82
12990066--12990180	58	2.0	57	80	11	128	76	0	18	4	1.00
12990102--12990176	20	3.9	20	79	13	70	80	1	17	1	0.86
12990188--12990453	138	1.9	138	84	6	362	34	15	16	33	1.91
12990658--12990688	11	2.7	11	95	5	53	77	6	16	0	0.97
12990657--12990690	12	2.8	12	86	13	52	76	5	17	0	0.98
12992077--12992135	26	2.2	26	84	3	73	42	13	18	25	1.87
12992085--12992136	26	2.0	26	88	0	77	34	15	19	30	1.93
12992810--12992943	31	4.3	31	76	5	128	34	16	20	28	1.95
12993453--12993699	49	5.0	49	80	9	243	29	12	14	43	1.82
12993453--12993681	98	2.3	99	80	5	277	28	12	14	44	1.81
12993450--12993721	98	2.8	96	77	9	271	30	11	15	43	1.82
12993444--12993711	147	1.8	148	81	7	339	29	12	14	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12993595--12993721	49	2.6	47	80	7	137	34	8	15	40	1.78
12994350--12994785	143	3.0	142	77	8	411	31	11	13	43	1.80
12996642--12996693	19	2.7	19	84	3	68	84	3	3	7	0.85
12996641--12996708	27	2.5	26	83	4	91	82	2	8	5	0.93
12996672--12996702	16	1.9	16	93	0	53	87	0	6	6	0.68
12997376--12997416	11	3.7	11	83	0	55	85	0	14	0	0.60
12997375--12997416	18	2.4	18	84	4	59	85	0	14	0	0.59
12997376--12997425	22	2.2	24	89	7	77	82	0	16	2	0.77
12997375--12997425	24	2.1	24	85	7	68	82	0	15	1	0.76
12997375--12997416	7	6.0	7	81	8	50	85	0	14	0	0.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117