genome.fa.s90.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  61  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13463562--13463632	16	4.5	16	78	1	72	40	1	4	53	1.29
13474466--13474503	19	2.0	19	94	0	67	52	13	5	28	1.61
13474906--13474953	13	3.5	13	79	20	53	64	2	2	31	1.16
13474923--13474953	15	2.0	15	93	6	53	70	3	0	25	1.02
13476025--13476128	30	3.5	30	69	21	76	62	6	3	26	1.38
13476561--13476626	35	1.9	35	90	3	107	57	0	1	40	1.08
13476879--13476955	27	2.8	28	80	3	68	33	1	6	58	1.32
13476905--13476955	19	2.8	18	79	5	57	37	0	3	58	1.16
13476920--13476959	18	2.2	19	86	4	55	52	0	2	45	1.14
13477047--13477095	20	2.5	21	80	12	59	36	0	8	55	1.30
13477147--13477198	20	2.5	20	84	9	61	46	0	0	53	1.00
13477159--13477205	22	2.1	22	84	0	58	44	0	2	53	1.12
13477147--13477246	10	9.9	10	69	14	53	39	1	4	56	1.25
13479429--13479474	24	1.9	24	82	8	58	52	2	0	45	1.13
13480572--13480607	18	2.0	18	100	0	72	38	5	16	38	1.72
13486096--13486150	21	2.4	23	74	20	62	45	0	0	54	0.99
13486141--13486215	23	3.5	22	77	17	86	49	1	0	49	1.09
13486119--13486213	18	5.0	18	77	11	93	49	1	0	49	1.07
13486108--13486227	41	3.0	40	84	12	142	49	0	0	50	1.06
13487038--13487116	28	2.9	28	71	19	76	39	1	3	55	1.26
13487179--13487258	28	2.8	28	76	14	74	50	1	1	47	1.17
13491330--13491386	26	2.2	25	82	11	71	45	5	3	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13491340--13491398	26	2.3	26	88	5	86	44	5	1	49	1.34
13492410--13492611	41	4.9	41	89	3	275	44	18	12	24	1.85
13492385--13492611	82	2.7	80	84	9	269	44	18	12	24	1.84
13493610--13493652	21	2.0	22	86	13	63	4	11	0	83	0.78
13504279--13504631	198	1.8	192	82	9	455	35	8	7	48	1.62
13520278--13520381	25	4.2	24	82	4	127	47	9	12	30	1.73
13520278--13520381	49	2.1	50	89	1	156	47	9	12	30	1.73
13521498--13521650	13	11.5	13	75	15	111	18	0	35	44	1.55
13521608--13521650	6	6.7	6	82	12	50	18	0	34	46	1.50
13521510--13521640	52	2.5	52	86	5	165	19	0	35	44	1.56
13521652--13521676	6	4.2	6	100	0	50	16	0	36	48	1.46
13525413--13525454	14	2.9	15	85	3	50	40	21	7	30	1.80
13528658--13528695	17	2.3	17	86	4	51	78	10	7	2	1.04
13532225--13532289	6	10.8	6	81	0	76	47	4	1	46	1.32
13532225--13532289	4	16.2	4	80	0	76	47	4	1	46	1.32
13534501--13534581	41	2.1	40	82	13	98	50	0	1	48	1.08
13534825--13534857	15	2.1	16	88	5	50	45	0	3	51	1.16
13535193--13535231	17	2.2	18	86	4	53	56	10	0	33	1.33
13539303--13539354	25	2.1	25	96	0	95	25	13	15	46	1.82
13539700--13539736	17	2.2	17	100	0	74	24	27	16	32	1.96
13542034--13542077	20	2.1	22	83	8	56	61	0	6	31	1.22
13542247--13542275	14	2.0	15	93	6	51	13	17	13	55	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13542298--13542324	2	13.5	2	100	0	54	51	0	0	48	1.00
13544643--13544714	12	6.4	11	79	10	65	0	2	15	81	0.79
13544643--13544708	5	12.8	5	86	13	82	0	1	16	81	0.76
13544646--13544703	27	2.1	27	90	6	91	0	1	17	81	0.78
13544770--13544952	35	5.1	35	70	10	102	55	13	13	17	1.70
13544770--13544954	71	2.6	69	80	7	176	55	13	13	17	1.70
13544926--13545199	71	3.9	71	72	15	169	54	13	13	18	1.71
13544959--13545095	35	3.9	35	75	9	127	54	15	14	16	1.72
13545036--13545221	101	1.8	102	87	1	275	55	12	13	17	1.69
13545137--13545261	35	3.5	35	83	4	124	55	13	14	16	1.70
13544771--13545261	36	13.9	36	70	12	196	53	13	14	18	1.72
13545172--13545305	36	3.7	35	79	6	135	54	13	15	16	1.71
13545036--13545261	101	2.2	102	83	7	258	54	13	14	17	1.71
13545132--13545297	71	2.3	70	82	6	199	52	12	16	18	1.74
13545137--13545334	71	2.8	72	80	5	172	54	13	15	17	1.72
13545548--13545811	36	7.3	36	70	10	144	53	15	15	15	1.74
13545601--13545831	36	6.3	36	71	11	157	55	14	15	14	1.70
13546821--13546925	7	14.9	7	75	13	90	11	4	3	80	1.00
13546817--13546925	28	3.9	28	81	9	114	11	4	3	79	1.00
13546919--13546963	19	2.4	19	85	10	58	17	4	4	73	1.17
13546873--13546953	28	2.9	28	77	14	69	14	2	6	76	1.08
13557009--13557233	111	2.0	110	93	0	387	51	10	6	31	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13558125--13558202	3	24.3	3	80	19	79	33	29	5	32	1.79
13558036--13558199	19	7.9	20	70	23	94	35	26	4	32	1.78
13562676--13562733	21	2.7	22	78	7	66	70	1	5	22	1.16
13562718--13562764	19	2.5	19	82	3	60	70	2	14	12	1.26
13563615--13564049	239	1.8	238	80	6	522	43	12	22	20	1.86
13563634--13564090	120	3.8	121	72	7	360	44	12	22	20	1.85
13564897--13564943	16	3.1	15	82	14	60	4	12	0	82	0.80
13564904--13564955	26	2.0	26	84	0	68	5	17	0	76	0.97
13569474--13569525	20	2.6	20	81	6	61	67	3	3	25	1.25
13569509--13569559	21	2.4	21	83	6	68	72	1	1	23	1.05
13570392--13570442	3	17.0	3	87	0	75	66	0	3	29	1.09
13570448--13570479	16	2.1	15	94	5	55	53	15	0	31	1.43
13576003--13576053	25	2.0	25	96	0	93	58	3	11	25	1.50
13575999--13576287	130	2.2	130	96	0	535	45	12	12	29	1.78
13576187--13576281	49	1.9	49	85	4	129	41	14	12	31	1.84
13577512--13577561	20	2.5	20	86	0	73	32	20	18	30	1.96
13578282--13578324	19	2.3	19	88	8	61	79	0	11	9	0.95
13578295--13578333	19	2.1	19	85	9	53	79	5	10	5	1.04
13579864--13579931	24	3.2	20	78	17	82	39	4	4	51	1.42
13579872--13579918	24	2.0	24	95	0	85	38	4	4	53	1.40
13583830--13583864	18	1.9	18	94	0	61	42	11	25	20	1.85
13587749--13587800	27	2.0	27	88	3	79	53	9	0	36	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13587831--13587870	19	2.0	20	85	4	55	70	12	0	17	1.18
13590249--13590477	18	12.4	18	67	25	74	46	0	2	51	1.15
13590242--13590466	11	20.5	11	67	21	82	45	0	2	51	1.15
13590242--13590437	32	5.9	32	72	17	100	46	0	2	50	1.14
13590255--13590301	15	3.3	14	80	14	51	48	0	0	51	1.00
13590267--13590339	37	1.9	36	82	17	87	46	0	2	50	1.15
13590324--13590442	5	23.6	5	74	16	68	48	0	2	48	1.14
13590334--13590409	16	4.8	16	83	6	100	48	0	3	47	1.20
13590304--13590477	48	3.5	47	83	11	181	45	0	2	51	1.16
13590304--13590477	56	3.4	52	81	12	186	45	0	2	51	1.16
13594108--13594166	10	6.0	10	76	9	59	64	0	35	0	0.94
13594108--13594167	21	3.0	22	79	18	76	65	0	35	0	0.93
13600663--13600704	21	2.0	21	90	0	66	35	16	16	30	1.92
13607654--13607722	35	2.0	35	88	0	102	39	18	14	27	1.90
13612255--13612288	16	2.1	17	88	5	52	11	11	8	67	1.42
13620893--13620978	42	2.0	42	95	0	154	43	3	9	44	1.53
13621997--13622138	55	2.6	55	76	8	146	30	10	11	47	1.74
13629260--13629392	24	5.7	24	67	18	66	50	3	3	42	1.38
13629338--13629393	27	2.1	27	86	3	78	57	3	3	35	1.34
13630709--13630779	18	3.9	18	77	12	65	74	1	2	21	1.02
13630698--13630780	37	2.4	33	78	11	87	74	1	3	20	1.03
13630705--13630755	19	2.8	18	82	11	68	78	1	3	15	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13633011--13633127	54	2.2	55	84	3	148	32	10	10	47	1.71
13641765--13642328	293	1.9	294	82	5	712	34	14	14	37	1.87
13645917--13645964	24	2.0	25	83	4	62	29	6	14	50	1.67
13646148--13646308	3	57.0	3	78	14	164	34	2	1	62	1.17
13647162--13647203	13	3.2	13	90	6	59	14	0	2	83	0.75
13652316--13652355	21	1.9	21	94	0	71	45	0	10	45	1.37
13652806--13652848	19	2.3	19	88	8	61	32	0	2	65	1.06
13655389--13655448	10	5.8	10	74	20	52	53	5	1	40	1.33
13659401--13659482	25	3.3	25	94	0	137	25	17	30	26	1.97
13659970--13660002	16	2.0	17	88	5	50	45	0	3	51	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117