genome.fa.s90.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  13  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3766528--3766569	17	2.4	18	84	15	61	21	0	0	78	0.75
3766531--3766584	22	2.5	22	81	6	56	25	1	1	70	1.07
3766584--3766947	58	6.2	58	71	15	239	48	6	9	35	1.62
3766801--3766988	55	3.5	53	79	5	216	42	8	12	36	1.74
3766788--3766987	108	1.8	109	91	3	332	42	8	13	36	1.74
3767157--3767182	9	2.9	9	100	0	52	23	7	0	69	1.14
3767562--3767618	30	1.9	30	96	0	105	22	24	19	33	1.97
3771943--3771967	4	6.2	4	100	0	50	24	0	24	52	1.48
3778463--3778525	23	2.6	25	71	16	69	36	4	1	57	1.30
3778509--3778536	13	2.2	13	100	0	56	42	0	0	57	0.99
3783828--3783865	12	3.2	12	96	0	67	13	18	15	52	1.74
3783828--3783896	12	5.8	12	82	0	66	7	23	18	50	1.71
3800183--3800356	42	4.1	42	83	2	217	36	40	13	9	1.77
3800192--3800353	84	1.9	84	89	0	252	35	40	12	10	1.78
3800478--3800559	42	2.0	42	82	0	101	42	40	12	4	1.64
3800502--3800593	42	2.2	42	79	11	100	43	39	9	7	1.66
3800697--3800754	27	2.1	27	87	0	80	18	58	5	17	1.56
3800732--3801099	21	17.2	21	72	4	207	22	52	4	20	1.64
3800724--3801099	42	8.8	42	83	4	367	21	53	4	19	1.64
3800850--3801123	132	2.1	132	84	2	354	22	52	4	20	1.64
3814144--3814168	2	12.5	2	100	0	50	48	0	0	52	1.00
3815278--3815312	2	17.5	2	93	0	61	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3816304--3816349	8	5.9	8	76	23	53	32	2	0	65	1.05
3816304--3816349	15	2.9	16	81	18	53	32	2	0	65	1.05
3816305--3816349	23	2.0	22	95	4	81	31	2	0	66	1.04
3816579--3816630	26	2.0	26	85	14	72	50	0	3	46	1.20
3816580--3816640	26	2.4	25	82	17	65	54	0	3	42	1.17
3817151--3817191	21	2.0	21	90	0	64	41	17	9	31	1.82
3823824--3823865	21	2.0	20	82	13	50	57	0	0	42	0.99
3823836--3823899	22	2.9	22	75	15	60	54	3	0	42	1.16
3825468--3825526	27	2.1	28	87	9	86	44	5	3	47	1.42
3825229--3825901	224	3.0	224	92	1	1112	43	4	7	44	1.53
3826448--3826724	134	2.1	134	84	10	358	35	8	4	51	1.54
3828444--3828505	29	2.1	28	85	5	79	46	3	0	50	1.17
3829047--3829121	30	2.6	29	82	6	89	37	4	5	53	1.43
3830461--3830491	2	15.5	2	93	0	53	51	3	0	45	1.17
3830658--3830703	22	2.3	19	85	11	56	80	0	2	17	0.81
3830988--3831030	17	2.6	17	86	13	63	74	0	0	25	0.82
3830990--3831030	16	2.5	16	88	11	57	75	0	0	24	0.80
3849754--3849815	29	2.1	29	96	0	115	38	6	14	40	1.72
3860641--3860709	31	2.2	31	84	5	86	44	2	2	49	1.32
3860691--3860748	13	4.5	13	71	18	50	44	0	1	53	1.10
3860690--3860747	18	3.0	19	72	10	55	43	0	1	55	1.10
3860685--3860827	30	4.7	30	69	15	89	43	1	0	54	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3861282--3861373	33	2.9	32	79	9	91	57	0	5	36	1.22
3862468--3862526	28	2.1	27	81	9	66	45	0	5	49	1.24
3862581--3862634	29	1.9	29	81	7	67	51	3	3	40	1.37
3862616--3862682	18	3.8	18	69	13	50	52	5	0	41	1.26
3863957--3863994	4	9.5	4	88	0	58	68	0	2	28	1.03
3869717--3869764	25	1.9	25	82	0	60	68	14	14	2	1.30
3879365--3879430	12	5.4	12	74	18	57	34	0	1	63	1.04
3879377--3879430	25	2.2	25	89	0	81	35	0	1	62	1.06
3879419--3879462	19	2.5	17	89	10	70	52	0	0	47	1.00
3879419--3879466	18	2.6	19	81	18	66	50	0	0	50	1.00
3883227--3883268	20	2.1	20	86	0	57	52	4	7	35	1.50
3883574--3883622	16	3.1	15	85	8	53	69	0	0	30	0.89
3883574--3883622	17	3.1	16	83	13	57	69	0	0	30	0.89
3884689--3884727	11	3.5	11	85	0	51	71	7	2	17	1.21
3887040--3887075	2	18.0	2	88	0	54	44	5	0	50	1.25
3889034--3889080	23	2.0	23	100	0	94	21	12	17	48	1.79
3896365--3896396	2	17.0	2	87	12	50	50	0	0	50	1.00
3898243--3898276	16	2.1	16	88	0	50	70	0	0	29	0.87
3900358--3900423	25	2.6	26	76	11	75	39	1	12	46	1.50
3905885--3905941	3	19.0	3	100	0	114	33	0	0	66	0.92
3908039--3908089	22	2.3	22	80	6	59	35	3	5	54	1.43
3912414--3912466	24	2.2	24	90	3	81	50	18	11	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3915971--3916021	23	2.1	25	82	10	61	74	7	0	17	1.05
3916909--3916953	18	2.4	19	85	7	56	57	0	0	42	0.98
3917930--3917960	16	1.9	16	93	0	53	77	3	3	16	1.03
3925370--3925411	16	2.7	16	82	14	52	73	0	7	19	1.05
3925388--3925423	13	2.9	12	84	8	54	75	0	5	19	1.00
3926064--3926089	3	8.7	3	100	0	52	69	0	0	30	0.89
3926591--3926625	18	1.9	18	88	0	52	74	2	5	17	1.14
3933551--3933587	19	1.9	19	89	10	58	43	0	0	56	0.99
3951094--3951157	4	16.0	4	83	0	56	43	6	6	43	1.54
3951094--3951157	6	10.7	6	77	0	56	43	6	6	43	1.54
3951094--3951157	10	6.4	10	75	0	56	43	6	6	43	1.54
3951094--3951157	24	2.8	22	75	9	74	43	6	6	43	1.54
3951108--3951152	20	2.2	20	88	0	63	42	6	8	42	1.62
3956803--3956852	25	2.0	25	88	11	77	42	0	0	58	0.98
3963522--3963550	14	2.0	15	93	6	51	37	0	62	0	0.96
3963665--3963735	15	4.8	14	81	10	70	36	0	61	1	1.05
3963623--3963709	43	2.1	42	85	8	115	37	2	58	1	1.18
3963668--3963735	24	2.8	24	80	8	75	36	0	61	1	1.05
3963662--3963743	15	5.5	14	79	15	67	36	1	60	1	1.12
3969476--3969514	16	2.4	16	86	0	51	43	0	2	53	1.14
3971294--3971349	14	3.7	15	74	9	51	50	1	0	48	1.11
3984731--3984756	11	2.4	11	100	0	52	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3989391--3989430	3	13.3	3	100	0	80	67	0	0	32	0.91
3993218--3993261	22	2.0	22	95	0	79	36	11	9	43	1.72
3997151--3997194	22	2.0	22	95	0	79	31	11	13	43	1.80
4003610--4003648	14	2.8	14	80	0	51	51	15	15	17	1.77
4008621--4008811	63	3.0	62	75	11	172	45	5	6	43	1.51
4010039--4010108	26	2.6	28	82	8	92	41	5	1	51	1.34
4023643--4023748	53	2.0	54	96	1	196	33	17	16	33	1.92
4024815--4024924	53	2.0	53	84	5	139	36	10	20	31	1.88
4025555--4025580	13	2.0	13	100	0	52	38	7	7	46	1.61
4025793--4025957	83	2.0	83	90	0	258	37	4	4	53	1.42
4025821--4025983	83	2.0	83	79	4	177	41	3	6	48	1.47
4025974--4026034	18	3.3	18	67	13	52	57	1	4	36	1.30
4025928--4026035	37	2.9	36	83	8	119	54	3	8	33	1.48
4025928--4026031	39	2.7	38	79	11	115	55	3	7	32	1.46
4025986--4026046	18	3.3	18	68	4	50	57	3	4	34	1.36
4029588--4029626	20	1.9	21	89	5	62	53	2	2	41	1.28
4043574--4043664	45	2.0	45	95	0	164	48	2	14	35	1.56
4047488--4047516	14	2.1	14	100	0	58	34	6	13	44	1.71
4050145--4050463	158	2.0	158	97	0	602	28	20	15	35	1.94
4056762--4056796	14	2.4	14	90	4	52	34	0	2	62	1.10
4056773--4056809	19	2.1	17	90	10	56	29	0	0	70	0.88
4062329--4062563	119	2.0	120	93	0	400	54	10	10	24	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4067815--4067865	7	7.0	7	86	10	68	0	13	3	82	0.81
4067815--4067863	20	2.3	22	86	6	66	0	12	4	83	0.77
4069678--4069714	18	2.1	18	94	0	65	24	18	8	48	1.75
4069474--4069924	250	1.8	250	87	6	682	42	11	2	43	1.56
4072116--4072154	20	2.0	20	85	10	53	79	2	15	2	0.95
4081455--4081482	2	14.0	2	100	0	56	50	0	0	50	1.00
4082666--4082729	13	4.6	14	76	9	69	67	0	4	28	1.11
4082653--4082726	26	2.8	26	82	14	71	66	0	4	29	1.10
4082679--4082738	26	2.4	26	83	10	72	68	0	3	28	1.05
4087248--4087322	23	3.3	23	76	10	59	42	2	1	53	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117