genome.fa.s90.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  88  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17100522--17100601	26	3.0	26	90	1	124	27	26	18	27	1.98
17101342--17101394	26	2.0	26	92	0	88	28	24	18	28	1.98
17101866--17106828	900	5.6	897	86	4	6509	24	24	25	25	2.00
17103778--17103830	26	2.0	26	92	0	88	28	24	18	28	1.98
17104668--17104720	26	2.0	26	92	0	88	28	28	16	26	1.97
17105561--17105611	26	2.0	26	96	0	93	27	27	17	27	1.98
17107048--17107100	26	2.0	26	96	0	97	28	26	18	26	1.98
17110999--17111051	26	2.0	26	96	0	97	26	18	26	28	1.98
17112487--17112537	26	2.0	26	92	0	84	27	15	27	29	1.96
17113378--17113430	26	2.0	26	92	0	88	26	16	28	28	1.97
17114269--17114321	26	2.0	26	92	0	88	28	18	24	28	1.98
17111270--17116232	900	5.6	898	85	4	6486	25	25	24	25	2.00
17116058--17116110	26	2.0	26	88	0	79	26	18	22	32	1.97
17117494--17117572	26	3.0	26	92	0	131	26	18	26	27	1.98
17118407--17118459	26	2.0	26	96	0	97	26	22	26	24	2.00
17118899--17119184	136	2.1	136	87	0	410	33	19	17	29	1.95
17119446--17119498	26	2.0	26	100	0	106	26	20	26	26	1.99
17121238--17121288	25	2.0	26	84	3	68	33	19	21	25	1.97
17119041--17130506	899	12.8	896	85	4	14011	25	24	24	25	2.00
17122137--17122189	26	2.0	26	96	0	97	24	20	28	26	1.99
17123026--17123078	26	2.0	26	92	0	88	28	18	24	28	1.98
17123923--17123975	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17126612--17126664	26	2.0	26	89	7	81	28	16	22	32	1.96
17127525--17127577	26	2.0	26	92	0	88	30	20	22	26	1.98
17128416--17128467	27	1.9	27	96	0	95	25	23	26	25	2.00
17129314--17129366	26	2.0	26	88	0	79	32	20	18	28	1.97
17130222--17130274	26	2.0	26	92	0	88	28	16	26	28	1.97
17131502--17131553	26	2.0	26	85	3	70	30	19	23	26	1.98
17131527--17131903	159	2.4	159	85	2	490	21	28	30	19	1.98
17132561--17132609	26	1.9	25	91	4	80	30	20	22	26	1.98
17133889--17133941	26	2.0	26	92	0	88	26	16	26	30	1.97
17132710--17134471	899	2.0	898	87	2	2565	25	24	25	25	2.00
17134695--17134747	26	2.0	26	92	0	88	24	18	28	28	1.98
17135598--17135650	26	2.0	26	88	0	79	33	18	22	24	1.97
17136502--17136554	26	2.0	26	92	0	88	26	16	26	30	1.97
17134493--17137440	898	3.3	895	86	3	3980	25	24	24	25	2.00
17137388--17137466	26	3.0	26	98	0	149	26	18	27	26	1.98
17138528--17138580	26	2.0	26	92	0	88	28	22	24	24	2.00
17138481--17139835	678	2.0	682	87	2	1974	25	22	23	28	2.00
17140114--17140166	26	2.0	26	92	0	88	28	18	26	26	1.98
17139167--17141953	905	3.1	891	84	6	3606	24	24	24	26	2.00
17142835--17160552	899	19.9	893	85	4	21942	25	24	24	25	2.00
17146299--17146351	26	2.0	26	92	0	88	26	16	26	30	1.97
17147193--17147245	26	2.0	26	96	0	97	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17149869--17149918	25	2.0	26	92	4	84	26	14	28	32	1.94
17153381--17153432	26	2.0	26	100	0	104	26	19	26	26	1.99
17155179--17155231	26	2.0	26	96	0	97	26	18	26	28	1.98
17156079--17156131	26	2.0	26	96	0	97	28	16	24	30	1.97
17157850--17157901	26	2.0	26	92	0	86	28	21	23	26	1.99
17159656--17159708	26	2.0	26	96	0	97	28	20	24	26	1.99
17160933--17160985	26	2.0	26	96	0	97	26	18	26	28	1.98
17162219--17162271	26	2.0	26	85	0	70	28	15	24	32	1.95
17163053--17163103	26	2.0	26	96	0	93	29	21	21	27	1.99
17164808--17164860	26	2.0	26	92	0	88	28	18	24	28	1.98
17166572--17166621	25	2.0	26	92	4	84	32	18	22	28	1.97
17165774--17168189	902	2.7	897	88	2	3584	25	23	25	26	2.00
17168815--17168867	26	2.0	26	92	0	88	28	18	26	26	1.98
17169719--17169771	26	2.0	26	96	0	97	26	18	26	28	1.98
17169961--17170012	24	2.2	24	85	0	68	21	25	44	9	1.82
17168184--17176420	869	9.3	876	84	4	9678	25	23	24	26	2.00
17175412--17175470	26	2.3	26	80	5	68	20	5	22	52	1.65
17175878--17175930	26	2.0	26	96	0	97	26	18	26	28	1.98
17178330--17178382	26	2.0	26	92	7	90	26	16	26	30	1.97
17176584--17180334	898	4.2	897	86	3	4833	25	24	25	25	2.00
17179230--17179281	26	2.0	26	92	0	86	26	21	25	26	1.99
17180128--17180180	26	2.0	26	85	0	70	26	16	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17180122--17180640	184	2.8	184	86	0	680	21	28	28	21	1.99
17180496--17180548	26	2.0	26	92	0	88	24	20	24	30	1.99
17180124--17180699	184	3.1	182	81	4	647	22	28	27	21	1.99
17181384--17181438	27	2.1	26	93	3	92	27	12	27	32	1.93
17182293--17182342	26	1.9	26	91	0	82	28	20	26	26	1.99
17180470--17184326	903	4.3	897	85	4	5031	25	23	25	25	2.00
17183158--17183213	26	2.2	26	90	0	85	28	16	23	32	1.96
17184546--17184598	26	2.0	26	96	0	97	28	20	24	26	1.99
17183840--17184810	488	2.0	482	84	4	1283	25	29	26	19	1.98
17185440--17185495	26	2.2	26	93	0	94	28	17	23	30	1.97
17186336--17186388	26	2.0	26	96	0	97	28	20	24	26	1.99
17187227--17187282	26	2.2	26	93	0	94	28	17	23	30	1.97
17188991--17189046	26	2.2	26	90	0	85	28	16	23	32	1.96
17190758--17190813	26	2.2	26	93	0	94	28	17	23	30	1.97
17192524--17192579	26	2.2	26	93	0	94	28	17	23	30	1.97
17193421--17193473	26	2.0	26	92	0	88	30	20	22	26	1.98
17184326--17197032	867	14.3	897	85	4	16521	25	24	24	25	2.00
17193824--17193867	21	2.1	21	86	0	61	27	22	20	29	1.99
17194344--17194396	26	2.0	26	96	0	97	28	20	24	26	1.99
17196116--17196168	26	2.0	26	92	0	88	26	20	26	26	1.99
17197599--17197650	26	2.0	26	92	0	86	26	19	25	28	1.98
17197501--17197996	245	2.0	246	86	0	688	22	28	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17198735--17198787	26	2.0	26	92	0	88	28	18	26	26	1.98
17200493--17200545	26	2.0	26	88	0	79	26	20	26	26	1.99
17201395--17201452	26	2.2	26	93	0	98	27	18	27	25	1.98
17197748--17210620	899	14.4	898	83	5	14969	25	24	24	25	2.00
17202150--17202240	45	2.0	45	82	4	112	15	40	24	19	1.90
17202340--17202414	26	2.9	26	96	4	134	24	18	28	29	1.98
17203238--17203290	26	2.0	26	92	0	88	28	18	24	28	1.98
17205812--17205844	11	3.0	11	95	0	57	9	33	36	21	1.85
17206825--17206877	26	2.0	26	92	0	88	26	18	24	30	1.98
17207724--17207774	26	2.0	26	92	0	84	31	21	19	27	1.97
17208622--17208672	26	2.0	26	100	0	102	27	11	27	33	1.92
17209526--17209576	26	2.0	26	92	0	84	27	19	27	25	1.99
17210388--17210779	159	2.5	159	85	1	509	22	28	28	20	1.99
17211439--17211491	26	2.0	26	92	0	88	30	20	20	28	1.98
17212342--17212392	26	2.0	26	88	0	75	25	15	29	29	1.96
17213230--17213287	26	2.3	26	81	3	82	27	22	18	31	1.97
17214127--17214177	26	2.0	26	92	0	84	25	17	29	27	1.98
17215030--17215082	26	2.0	26	92	0	88	24	18	28	28	1.98
17215934--17216012	26	3.0	25	83	7	104	29	16	24	30	1.96
17217735--17217787	26	2.0	26	96	0	97	28	20	24	26	1.99
17219469--17219529	26	2.3	26	97	0	113	26	21	26	26	1.99
17220222--17220274	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17221129--17221291	4	41.8	4	68	18	62	26	1	3	67	1.17
17221240--17221272	17	1.9	17	88	11	50	36	0	0	63	0.95
17222315--17222354	17	2.4	16	84	8	53	22	5	0	72	1.04
17222341--17222388	17	2.8	17	78	9	53	12	6	2	79	1.01
17222341--17222398	14	4.2	14	76	8	57	13	6	1	77	1.05
17222364--17222403	14	2.5	17	73	23	50	15	10	0	75	1.05
17222406--17222638	58	3.9	59	89	5	373	45	6	11	35	1.67
17226514--17226556	18	2.2	20	88	8	63	74	0	18	6	1.04
17226523--17226583	11	5.8	10	80	5	59	78	0	18	3	0.88
17226514--17226575	21	3.1	19	80	15	63	77	0	17	4	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117