genome.fa.s90.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  15  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4339781--4339822	18	2.3	18	83	0	57	23	2	4	69	1.20
4339965--4340038	31	2.5	29	82	8	78	45	2	1	50	1.24
4339990--4340051	31	2.0	31	84	6	81	46	6	4	41	1.51
4347992--4348037	18	2.4	20	75	7	51	41	0	0	58	0.98
4348410--4348448	10	3.6	11	86	13	55	46	0	0	53	1.00
4349456--4349505	25	2.0	24	84	3	64	46	2	0	52	1.12
4349588--4349639	26	1.9	28	88	7	81	40	3	0	55	1.18
4353772--4353824	24	2.3	23	81	15	72	49	0	0	50	1.00
4357682--4357713	2	16.0	2	100	0	64	0	50	0	50	1.00
4357713--4357743	2	15.5	2	100	0	62	48	51	0	0	1.00
4364666--4364691	3	8.7	3	100	0	52	69	0	0	30	0.89
4376710--4376757	24	2.0	24	84	8	62	37	2	4	56	1.30
4385002--4385041	17	2.4	16	83	4	53	52	0	10	37	1.35
4385115--4385152	18	2.2	18	85	4	51	44	0	2	52	1.14
4413645--4413735	45	2.0	45	95	0	164	45	13	3	38	1.60
4419234--4419409	85	2.1	85	94	3	309	31	14	11	42	1.82
4422188--4422241	25	2.2	25	93	0	90	53	37	1	7	1.40
4423729--4423760	15	2.0	17	88	11	50	50	6	12	31	1.65
4429865--4429910	23	2.0	24	83	8	60	36	6	4	52	1.47
4429907--4429953	23	2.0	24	91	4	78	36	0	0	63	0.94
4429884--4429992	54	2.0	55	83	3	139	40	5	0	53	1.30
4431593--4431665	21	3.3	20	71	22	58	43	1	4	50	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4433577--4433602	13	2.0	13	100	0	52	23	0	0	76	0.78
4444957--4444990	13	2.5	14	95	4	61	17	0	2	79	0.86
4445680--4445722	21	2.0	21	95	0	77	25	11	20	41	1.86
4445870--4445906	16	2.4	16	82	17	51	21	8	5	64	1.40
4447282--4447372	47	1.9	47	80	10	105	49	1	2	47	1.21
4456805--4456912	55	2.0	55	86	0	153	42	13	20	23	1.88
4459909--4459938	6	5.0	6	91	0	51	16	20	33	30	1.94
4464882--4464931	23	2.1	23	88	3	73	40	2	0	58	1.10
4473956--4473993	15	2.5	15	95	0	67	0	7	78	13	0.94
4473965--4474029	21	3.1	21	81	0	76	3	9	76	10	1.11
4474616--4474659	20	2.1	21	91	4	72	50	0	2	47	1.13
4475616--4475651	18	2.0	18	89	10	56	27	0	0	72	0.85
4476173--4476202	15	1.9	16	93	6	53	30	13	10	46	1.75
4478452--4478476	12	2.1	12	100	0	50	24	16	24	36	1.94
4481755--4481990	117	2.0	117	93	0	400	38	13	15	33	1.86
4483712--4483740	13	2.3	13	94	5	51	44	6	27	20	1.77
4485618--4485661	23	1.9	23	95	0	79	40	20	20	18	1.91
4504357--4504425	32	2.2	32	86	0	93	59	5	14	20	1.56
4505202--4505235	2	17.0	2	93	0	59	0	52	0	47	1.00
4515171--4515222	21	2.5	21	90	0	77	17	50	5	26	1.69
4515197--4515249	27	2.0	27	88	0	79	15	56	3	24	1.55
4522496--4522546	15	3.4	14	77	20	50	37	0	1	60	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4522513--4522546	16	2.1	16	89	10	52	35	0	2	61	1.11
4533704--4533728	1	25.0	1	100	0	50	0	0	0	100	0.00
4536820--4536876	30	1.9	30	92	0	96	43	12	14	29	1.81
4540152--4540225	21	3.4	21	68	17	60	52	2	0	44	1.15
4540210--4540256	24	2.0	24	86	0	67	42	2	0	55	1.12
4543983--4544352	128	2.9	126	78	4	366	45	4	6	43	1.52
4544504--4544577	36	2.1	36	84	0	94	54	4	5	36	1.43
4544627--4544668	13	3.3	13	76	3	50	47	0	7	45	1.30
4548173--4548240	33	2.1	33	88	0	100	52	0	4	42	1.21
4548684--4548708	13	1.9	13	100	0	50	36	0	0	64	0.94
4549555--4549588	12	2.7	13	86	9	52	41	0	0	58	0.98
4549994--4550034	22	1.9	21	85	5	55	43	0	4	51	1.23
4550928--4550985	14	4.0	14	78	8	53	48	0	0	51	1.00
4554278--4554318	17	2.4	17	80	19	50	36	0	4	58	1.20
4555825--4555854	12	2.5	12	88	0	51	40	0	0	60	0.97
4558239--4558630	196	2.0	195	97	0	739	30	14	26	28	1.95
4561423--4561500	38	2.1	38	92	0	129	39	24	16	19	1.91
4571834--4571883	19	2.5	21	81	15	70	36	0	0	64	0.94
4572932--4573006	32	2.4	32	86	2	98	45	0	1	53	1.08
4573088--4573139	13	3.9	13	79	2	59	30	3	0	65	1.10
4575000--4575040	22	1.9	22	85	5	57	29	24	12	34	1.91
4576780--4576817	3	12.7	3	100	0	76	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4584220--4584263	18	2.3	20	84	7	56	38	4	0	56	1.20
4584567--4584604	13	2.8	13	92	8	58	42	0	5	52	1.24
4584641--4584733	29	3.2	29	77	14	102	35	1	1	62	1.10
4588818--4588852	6	5.8	6	87	12	54	34	0	0	65	0.93
4588810--4588852	13	3.3	13	81	18	54	32	2	0	65	1.06
4588800--4588852	18	2.9	17	83	13	54	33	1	1	62	1.17
4589373--4589580	53	3.9	53	94	0	362	25	19	25	30	1.98
4599122--4599670	201	2.7	199	83	3	699	36	11	7	44	1.68
4599741--4599775	17	2.1	17	89	10	54	31	0	0	68	0.90
4604209--4604246	19	2.1	19	85	14	53	28	21	15	34	1.94
4608011--4608069	15	3.9	15	82	4	73	50	3	0	45	1.18
4608008--4608048	2	21.5	2	80	9	50	51	0	0	48	1.00
4608578--4608614	3	12.7	3	94	5	67	29	0	0	70	0.88
4608838--4608961	62	2.0	63	82	1	151	25	5	25	44	1.75
4610424--4610476	3	17.7	3	100	0	106	66	0	0	33	0.92
4611574--4611600	3	9.0	3	100	0	54	66	0	0	33	0.92
4612537--4612561	13	1.9	13	100	0	50	32	4	32	32	1.76
4612537--4612570	16	2.1	16	89	10	52	32	5	32	29	1.81
4613965--4614003	19	2.0	20	90	5	62	69	0	0	30	0.89
4613990--4614028	14	2.7	15	84	8	53	61	0	0	38	0.96
4614081--4614143	28	2.1	31	83	13	80	60	3	0	36	1.13
4614082--4614141	24	2.5	25	84	10	81	60	3	0	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4619312--4619372	15	3.9	15	82	6	68	52	3	1	42	1.27
4619869--4619911	3	14.7	3	95	4	79	30	0	0	69	0.88
4620135--4620258	62	2.0	63	82	1	151	25	5	25	44	1.75
4621724--4621758	3	11.7	3	100	0	70	65	0	0	34	0.93
4622859--4622891	3	11.0	3	100	0	66	66	0	0	33	0.92
4625063--4625123	18	3.5	19	76	19	62	65	0	0	34	0.93
4625082--4625124	14	3.0	14	87	12	61	62	0	0	37	0.95
4625063--4625135	25	3.1	24	73	19	66	63	0	1	35	1.04
4625084--4625135	15	3.5	15	84	5	70	61	0	1	36	1.07
4625168--4625246	27	3.1	26	78	10	67	64	1	0	34	1.02
4625181--4625251	26	2.6	28	85	10	87	61	1	0	36	1.05
4625225--4625327	38	2.9	35	80	12	95	50	2	0	45	1.23
4625259--4625355	38	2.4	39	78	14	110	53	1	0	45	1.07
4633069--4633138	29	2.4	30	83	7	90	55	0	2	41	1.14
4645422--4649455	445	9.0	442	83	4	4638	41	12	7	38	1.71
4651449--4651485	19	1.9	19	88	0	56	70	0	2	27	1.01
4654519--4654667	80	1.9	80	91	1	246	36	10	6	46	1.64
4672970--4673047	36	2.1	36	85	2	102	47	2	3	46	1.34
4673344--4673497	71	2.2	70	82	5	184	42	9	5	42	1.60
4677799--4677849	17	3.1	16	76	23	52	19	5	1	72	1.15
4677792--4677847	29	1.9	29	85	7	78	19	5	1	73	1.12
4678406--4678452	14	3.3	15	85	8	55	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4678468--4678665	110	1.8	108	81	6	249	43	12	8	35	1.73
4685112--4685791	84	8.1	83	75	7	428	31	12	15	40	1.84
4685049--4685775	167	4.4	168	79	5	537	30	11	16	41	1.84
4685558--4685769	40	5.1	40	65	15	106	31	13	16	38	1.87
4685822--4685867	22	2.1	22	88	8	67	34	15	10	39	1.82
4687100--4687139	20	1.9	22	85	10	57	62	10	2	25	1.39
4687100--4687139	22	1.9	20	85	10	53	62	10	2	25	1.39
4688766--4688811	16	2.8	17	81	12	51	36	4	0	58	1.18
4689609--4689642	11	3.2	11	83	8	52	55	5	0	38	1.24
4689662--4689767	21	5.1	20	78	7	61	35	1	9	52	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117