genome.fa.s90.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  92  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17609646--17609697	10	5.2	10	75	9	52	71	0	0	28	0.87
17609649--17609679	16	1.9	16	93	0	53	74	0	0	25	0.82
17609649--17609730	19	4.7	17	73	25	57	65	2	1	30	1.13
17609743--17609803	27	2.2	27	80	11	70	68	3	1	26	1.14
17610007--17610057	9	5.7	9	80	15	61	0	0	11	88	0.52
17610014--17610057	13	3.7	12	88	8	63	0	0	11	88	0.51
17610007--17610056	11	4.5	11	80	9	66	0	0	12	88	0.53
17610064--17610484	41	10.1	40	88	7	610	36	23	16	23	1.94
17610064--17610484	165	2.5	166	94	2	731	36	23	16	23	1.94
17610064--17610484	83	5.1	83	95	2	731	36	23	16	23	1.94
17611735--17611777	17	2.5	17	88	0	59	4	18	0	76	0.95
17611760--17611816	22	2.6	21	74	15	53	7	21	0	71	1.08
17611748--17611804	11	5.1	11	79	8	53	5	19	0	75	0.99
17615682--17615858	58	3.0	59	91	2	284	33	12	8	44	1.73
17615879--17615922	17	2.6	17	82	7	54	81	2	4	11	0.92
17615909--17615948	17	2.4	16	84	8	53	72	0	5	22	1.04
17616891--17616929	16	2.4	16	86	0	60	69	7	7	15	1.35
17616987--17617038	10	5.2	10	75	9	52	71	0	0	28	0.87
17616990--17617020	16	1.9	16	93	0	53	74	0	0	25	0.82
17617085--17617136	27	1.9	27	84	7	70	67	5	1	25	1.23
17617995--17618044	26	1.9	26	95	0	91	26	28	18	28	1.98
17618891--17618943	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17620762--17620814	26	2.0	26	92	0	88	26	18	24	30	1.98
17622534--17622586	26	2.0	26	100	0	106	26	20	26	26	1.99
17624298--17624434	27	5.1	27	72	18	76	27	2	3	66	1.20
17624376--17624443	16	3.9	17	79	14	59	29	1	1	67	1.08
17624396--17624447	10	5.2	10	75	9	52	28	0	0	71	0.87
17625485--17625523	16	2.4	16	84	12	53	23	5	0	71	1.05
17625511--17625558	16	2.9	17	77	22	57	14	4	2	79	0.98
17625573--17625751	59	3.0	60	92	1	297	45	8	12	33	1.73
17629611--17629689	17	4.6	17	71	16	65	72	0	20	7	1.09
17630936--17631269	41	8.1	41	92	3	530	22	16	24	36	1.94
17630936--17631269	83	4.0	83	92	4	536	22	16	24	36	1.94
17630936--17631269	124	2.7	121	92	3	544	22	16	24	36	1.94
17631276--17631329	1	54.0	1	81	0	63	90	9	0	0	0.45
17631276--17631329	21	2.6	21	94	2	92	90	9	0	0	0.45
17631276--17631323	12	4.2	12	89	7	73	91	8	0	0	0.41
17631528--17631579	27	1.9	27	84	7	70	26	1	3	67	1.18
17631545--17631674	19	6.7	20	68	20	73	30	2	3	63	1.22
17631614--17631680	20	3.4	19	85	8	73	32	1	1	64	1.12
17632565--17632649	44	1.9	44	92	4	145	11	44	20	23	1.84
17632679--17632737	16	3.8	16	75	16	52	13	1	3	81	0.90
17632798--17632837	14	2.5	17	73	23	50	15	10	0	75	1.05
17632784--17632832	14	3.4	14	80	5	53	14	8	2	75	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17632840--17633019	61	3.0	60	83	6	256	45	8	12	34	1.72
17633613--17633665	26	2.0	26	92	0	88	26	18	24	30	1.98
17633846--17633877	12	2.7	12	100	0	64	0	25	68	6	1.12
17634516--17634567	26	2.0	26	96	0	95	26	15	28	28	1.96
17636316--17636368	26	2.0	26	88	0	79	28	18	24	28	1.98
17637208--17637258	26	2.0	26	96	0	93	27	13	29	29	1.94
17633529--17655902	903	25.2	892	77	9	15739	25	23	24	25	2.00
17638971--17639023	26	2.0	26	96	0	97	26	18	26	28	1.98
17644089--17644144	26	2.2	26	96	0	103	28	17	25	28	1.98
17644992--17645044	26	2.0	26	92	0	88	28	20	22	28	1.99
17643359--17646112	907	3.1	899	87	3	3516	25	24	24	25	2.00
17645881--17646251	158	2.3	159	85	1	458	21	29	28	21	1.98
17647829--17647878	26	1.9	26	87	0	73	30	18	26	26	1.98
17648720--17648772	26	2.0	26	100	0	106	26	20	26	26	1.99
17650512--17650564	26	2.0	26	92	0	88	28	22	24	24	2.00
17652294--17652346	26	2.0	26	92	7	90	26	16	26	30	1.97
17653197--17653249	26	2.0	26	100	0	106	26	20	26	26	1.99
17655832--17655887	26	2.2	26	93	0	94	26	16	26	30	1.96
17656461--17656909	232	1.9	230	83	5	584	22	32	24	20	1.98
17656870--17656922	26	2.0	26	92	0	88	28	18	24	28	1.98
17658647--17658699	26	2.0	26	96	0	97	26	22	26	24	2.00
17656688--17659641	893	3.3	883	85	4	3860	25	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17659797--17659849	26	2.0	26	92	0	88	26	18	28	26	1.98
17660699--17660750	26	2.0	25	81	3	59	28	19	23	28	1.98
17661565--17661618	27	2.0	29	89	10	87	25	20	24	29	1.99
17659741--17665553	898	6.5	887	85	5	6890	24	24	25	25	2.00
17664254--17664306	26	2.0	26	96	0	97	28	20	24	26	1.99
17665152--17665230	26	3.0	26	88	0	131	29	18	25	26	1.98
17668614--17668663	26	1.9	26	95	0	91	28	16	24	32	1.96
17665552--17671326	903	6.5	900	86	3	7705	25	24	24	25	2.00
17669504--17669556	26	2.0	26	88	0	79	26	18	22	32	1.97
17670571--17672756	708	3.1	708	86	3	3031	26	22	24	27	2.00
17672730--17672782	26	2.0	26	96	0	97	28	20	24	26	1.99
17673623--17673672	25	2.0	25	88	0	73	32	18	22	28	1.97
17671992--17674741	878	3.1	875	84	6	3620	25	24	24	25	2.00
17677080--17677132	26	2.0	26	92	7	90	26	16	26	30	1.97
17674796--17677603	887	3.2	889	85	4	3707	25	24	24	26	2.00
17676816--17678358	762	2.0	770	85	3	2077	24	24	26	25	2.00
17679629--17679679	26	2.0	26	92	0	84	31	15	27	25	1.96
17677598--17680747	885	3.5	891	87	3	4304	25	24	25	25	2.00
17680721--17680773	26	2.0	26	96	0	97	28	20	24	26	1.99
17680514--17680932	185	2.3	185	83	2	529	23	27	27	21	1.99
17680747--17681120	159	2.4	158	83	3	439	22	28	29	18	1.98
17682659--17682711	26	2.0	26	82	7	63	32	16	22	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17683412--17683464	26	2.0	26	92	0	88	28	20	22	28	1.99
17686989--17687041	26	2.0	26	96	0	97	26	18	26	28	1.98
17682953--17687774	888	5.4	900	86	3	6546	25	24	25	25	2.00
17687898--17688028	21	5.9	22	73	16	85	29	1	3	66	1.16
17687975--17688030	17	3.2	17	85	10	60	32	1	1	64	1.14
17688981--17689007	10	2.7	10	100	0	54	14	0	7	77	0.97
17689045--17689084	17	2.4	16	84	8	53	22	5	0	72	1.04
17689071--17689118	17	2.8	17	78	9	53	12	6	2	79	1.01
17689071--17689128	14	4.2	14	76	8	57	13	6	1	77	1.05
17689094--17689133	14	2.5	17	73	23	50	15	10	0	75	1.05
17689136--17689372	117	2.0	119	90	4	372	45	8	11	34	1.70
17689136--17689372	59	4.0	60	88	6	340	45	8	11	34	1.70
17690753--17690805	26	2.0	26	92	0	88	26	18	28	26	1.98
17691654--17691705	26	2.0	25	81	3	59	28	19	23	28	1.98
17692521--17692599	26	3.0	26	92	0	131	27	20	25	26	1.99
17690638--17696521	887	6.6	884	83	7	6463	24	24	24	25	2.00
17695230--17695282	26	2.0	26	96	0	97	28	20	24	26	1.99
17696123--17696201	26	3.0	26	88	0	131	29	18	25	26	1.98
17697791--17697840	26	1.9	26	91	0	82	30	16	26	28	1.96
17699585--17699634	26	1.9	26	100	0	100	28	18	24	30	1.97
17696520--17702217	888	6.5	900	85	5	6938	25	24	24	25	2.00
17700472--17700524	26	2.0	26	88	0	79	26	18	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17702846--17702896	26	2.0	26	92	0	84	31	15	27	25	1.96
17703755--17703822	26	2.6	26	100	0	136	30	20	23	25	1.98
17703961--17704013	26	2.0	26	92	0	88	30	20	22	26	1.98
17703776--17704172	185	2.1	185	82	3	469	24	27	26	21	1.99
17703987--17704349	159	2.3	158	83	3	426	23	28	28	19	1.98
17705900--17705952	26	2.0	26	82	7	63	32	16	22	28	1.96
17706734--17706786	26	2.0	26	92	0	88	28	20	22	28	1.99
17706182--17711116	902	5.5	901	88	1	6955	25	24	24	25	2.00
17710331--17710383	26	2.0	26	96	0	97	26	18	26	28	1.98
17711256--17711382	21	5.8	21	70	23	75	29	1	3	65	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117