genome.fa.s90.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  60  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13280592--13280700	32	3.5	32	74	9	107	17	21	9	52	1.72
13280848--13280931	32	2.6	32	81	3	98	21	23	8	46	1.78
13280848--13280948	32	3.2	32	80	2	96	21	23	7	46	1.77
13280977--13281041	33	2.0	33	87	0	94	29	16	10	43	1.82
13281393--13281519	14	8.6	14	72	15	71	16	8	3	71	1.24
13281398--13281471	34	2.4	30	78	13	78	14	8	1	75	1.09
13281394--13281470	26	2.8	28	78	13	79	14	7	1	76	1.06
13281394--13281454	27	2.3	27	83	11	72	13	8	1	77	1.07
13281405--13281454	9	5.8	9	75	15	52	12	8	2	78	1.05
13281370--13281470	49	2.0	52	83	12	131	15	7	1	74	1.14
13282202--13282374	64	2.7	63	78	9	176	49	8	9	31	1.66
13282375--13282425	21	2.4	21	71	9	50	56	3	3	35	1.36
13283723--13283789	3	22.3	3	93	0	116	64	0	1	34	1.03
13286555--13286640	3	29.0	3	83	2	111	60	2	4	32	1.30
13286849--13287355	117	4.3	118	79	6	431	44	15	23	17	1.86
13288120--13288251	45	2.9	45	78	2	140	18	21	13	45	1.84
13295075--13295198	64	1.9	64	95	0	221	15	19	13	51	1.76
13296091--13296129	18	2.0	20	85	9	55	12	20	0	66	1.24
13297556--13297591	18	2.0	18	89	10	56	72	0	19	8	1.10
13299820--13299853	17	1.9	18	88	5	52	85	0	14	0	0.60
13300546--13300591	21	2.1	22	88	4	67	28	19	0	52	1.47
13301061--13301085	13	1.9	13	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13303255--13303310	21	2.8	20	74	12	53	48	0	5	46	1.25
13310967--13311703	204	3.6	204	78	6	604	42	9	10	37	1.73
13311799--13311846	22	2.2	22	96	0	87	35	14	10	39	1.80
13315407--13315478	26	2.9	25	77	8	76	73	1	4	20	1.07
13317370--13317456	35	2.5	35	84	0	129	47	16	6	29	1.72
13317842--13318003	65	2.5	65	82	3	211	41	9	22	25	1.85
13318229--13318517	86	3.4	85	82	4	355	36	12	17	33	1.88
13318446--13318484	17	2.2	18	86	4	53	33	20	12	33	1.91
13318446--13318489	18	2.5	17	85	3	52	34	22	13	29	1.93
13318620--13318646	13	2.1	13	100	0	54	37	7	33	22	1.82
13327327--13327409	27	3.1	27	75	11	73	16	24	22	36	1.95
13327452--13327507	3	18.7	3	96	0	103	32	0	1	66	1.03
13328391--13328448	5	11.4	5	73	23	50	20	5	0	74	1.01
13328393--13328451	13	4.4	13	73	23	59	22	5	0	72	1.03
13333642--13333821	3	58.3	3	70	21	83	29	1	5	63	1.24
13333804--13333912	42	2.5	44	76	10	116	24	7	6	61	1.46
13334241--13334310	31	2.2	32	85	12	101	27	24	24	24	2.00
13334364--13334408	20	2.3	19	84	3	63	26	26	22	24	2.00
13334733--13334791	17	3.8	16	76	17	52	15	0	5	79	0.89
13334728--13334784	20	2.8	20	77	12	55	12	0	8	78	0.95
13334750--13334828	30	2.6	30	76	7	88	21	2	5	70	1.18
13334828--13334884	24	2.3	25	82	11	73	10	5	3	80	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13334849--13334889	18	2.3	18	86	0	55	9	7	0	82	0.83
13334896--13335047	77	1.9	79	94	2	272	48	8	10	32	1.68
13334968--13335090	59	2.0	61	87	3	178	43	7	13	34	1.72
13340768--13340805	15	2.6	14	92	8	67	92	5	0	2	0.47
13341278--13341311	17	1.9	17	88	5	50	88	2	5	2	0.70
13341649--13341947	118	2.5	118	78	4	298	18	20	16	44	1.86
13342039--13342078	20	2.0	20	100	0	80	10	30	20	40	1.85
13341936--13342185	138	1.8	139	84	2	342	18	22	16	43	1.88
13342411--13342492	3	28.0	3	85	7	107	26	1	1	70	1.02
13342415--13342512	15	6.7	15	86	5	85	21	3	1	74	1.01
13342478--13342519	15	2.7	15	85	3	57	9	9	0	80	0.89
13342914--13342970	21	2.7	21	79	17	64	17	0	17	64	1.29
13343304--13343367	5	12.8	5	71	12	51	18	6	1	73	1.12
13343290--13343357	18	3.5	19	78	11	66	16	8	1	73	1.15
13345597--13346767	233	5.0	236	73	9	862	45	12	9	32	1.74
13353181--13353217	16	2.5	15	87	12	58	78	5	0	16	0.93
13353402--13354029	312	2.0	311	97	0	1184	33	19	11	35	1.88
13354209--13354248	20	2.0	20	85	9	55	27	30	0	42	1.56
13364078--13364116	20	1.9	21	89	5	62	25	0	17	56	1.41
13368778--13368844	29	2.2	31	84	7	84	53	1	1	43	1.19
13373696--13373785	29	3.1	29	75	0	81	56	12	6	24	1.59
13375035--13375091	24	2.4	23	77	8	60	70	7	5	17	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13375468--13375504	16	2.3	16	86	13	58	64	0	0	35	0.94
13376016--13376051	17	2.1	17	90	10	56	63	2	0	33	1.08
13382446--13382513	34	2.0	34	88	0	100	39	14	23	22	1.91
13389263--13389288	12	2.2	12	100	0	52	69	0	0	30	0.89
13389782--13389833	27	1.9	27	88	0	77	50	0	1	48	1.12
13389869--13389894	7	3.7	7	100	0	52	53	0	0	46	1.00
13391670--13391696	2	13.5	2	100	0	54	48	0	0	51	1.00
13391738--13391774	2	18.5	2	100	0	74	51	0	48	0	1.00
13393464--13393624	83	1.9	83	86	2	225	35	11	17	36	1.85
13394745--13394786	20	2.1	20	86	0	57	2	11	4	80	0.95
13401519--13401593	23	3.6	21	78	15	84	56	2	0	41	1.13
13401553--13401593	13	3.4	13	77	19	52	56	4	0	39	1.21
13401678--13401727	23	2.2	22	89	10	75	54	0	0	46	1.00
13401802--13401872	25	2.8	24	82	16	81	47	1	0	50	1.09
13401762--13401831	36	1.9	37	86	13	101	45	0	0	54	0.99
13401809--13401872	26	2.5	26	87	5	87	48	1	0	50	1.10
13401994--13402028	14	2.5	14	90	9	54	34	11	5	48	1.63
13401994--13402035	14	2.9	15	82	13	52	38	11	7	42	1.69
13402252--13402285	2	17.0	2	100	0	68	50	0	0	50	1.00
13403102--13403137	19	1.9	18	88	5	54	61	8	13	16	1.56
13404751--13405128	127	3.0	124	74	5	337	42	11	11	34	1.77
13405158--13405312	63	2.5	63	76	5	152	46	8	10	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13405501--13405537	17	2.2	17	100	0	74	51	5	10	32	1.60
13406556--13406581	2	13.0	2	100	0	52	50	0	0	50	1.00
13413553--13413577	13	1.9	13	100	0	50	32	0	4	64	1.12
13413853--13414032	77	2.3	78	81	10	215	41	9	6	42	1.63
13416927--13416969	10	4.3	10	79	8	52	4	11	0	83	0.78
13416933--13416971	17	2.5	15	87	8	51	5	10	0	84	0.76
13430069--13430340	140	1.9	143	84	5	367	38	12	18	30	1.88
13430689--13430731	21	2.0	23	86	9	63	20	11	25	41	1.86
13436104--13436151	23	2.0	23	88	4	69	64	2	4	29	1.23
13442594--13442644	2	25.5	2	87	0	75	43	0	5	50	1.26
13442594--13442644	14	3.6	14	91	0	84	43	0	5	50	1.26
13445809--13445907	52	1.9	52	100	0	198	33	9	5	52	1.55
13449305--13449349	14	3.1	15	81	15	51	26	0	0	73	0.84
13449314--13449379	14	4.3	15	71	19	55	30	1	0	68	0.99
13449330--13449379	15	2.9	18	65	17	52	32	2	0	66	1.03
13449307--13449384	32	2.5	31	87	10	113	29	1	0	69	0.97
13450118--13450195	3	25.0	3	92	7	129	32	1	1	65	1.09
13450217--13450251	5	6.6	5	87	12	52	20	0	0	80	0.72
13450212--13450252	11	3.6	11	84	15	57	19	2	0	78	0.87
13450219--13450250	16	1.9	16	93	6	55	21	0	0	78	0.76
13450212--13450253	12	3.7	12	78	12	52	19	2	0	78	0.86
13450260--13450442	57	3.2	56	79	8	176	46	7	9	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13450395--13450483	45	2.0	46	84	8	121	51	6	7	33	1.57
13450541--13450574	11	3.0	11	95	4	59	2	8	0	88	0.62
13451554--13451600	17	2.7	18	80	9	62	34	0	0	65	0.93
13451562--13451629	15	4.7	15	74	12	54	39	1	0	58	1.07
13451554--13451594	8	4.8	9	82	11	50	31	0	0	68	0.90
13453908--13453942	2	18.0	2	94	5	63	0	48	0	51	1.00
13458815--13458839	6	4.2	6	100	0	50	16	0	0	84	0.63
13460814--13460893	29	2.7	29	78	7	81	43	0	1	55	1.08
13460838--13460896	21	3.0	20	78	11	59	44	0	0	55	0.99
13463099--13463164	25	2.4	28	78	12	75	54	1	1	42	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117