genome.fa.s90.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  42  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10089765--10089805	18	2.3	18	86	0	55	56	9	0	34	1.32
10090041--10090523	43	11.2	43	78	9	387	38	15	14	31	1.87
10090041--10090523	129	3.7	127	78	6	447	38	15	14	31	1.87
10095298--10095354	30	1.9	30	89	7	89	59	7	5	28	1.45
10096909--10096943	18	1.9	18	94	0	61	60	11	0	28	1.32
10100321--10100354	2	17.0	2	100	0	68	50	0	0	50	1.00
10100584--10100613	3	10.0	3	92	0	51	33	0	3	63	1.11
10101030--10101084	24	2.2	24	87	9	76	47	5	0	47	1.25
10101597--10101650	26	2.1	26	96	0	99	22	22	22	33	1.97
10103822--10103871	22	2.3	22	83	13	59	54	2	0	44	1.11
10105562--10105605	22	2.0	22	83	12	56	54	4	0	40	1.21
10106288--10106462	97	1.8	96	84	7	239	40	6	9	44	1.63
10109300--10109342	17	2.5	18	77	11	54	72	2	18	6	1.19
10109341--10109406	3	22.0	3	85	0	87	59	0	6	34	1.22
10109930--10110308	117	3.2	117	75	5	345	39	13	22	24	1.91
10109975--10110390	117	3.6	114	77	6	370	38	12	23	25	1.90
10110557--10110645	41	2.2	41	85	0	124	31	20	16	31	1.95
10116930--10117134	59	3.5	58	86	5	277	44	6	12	35	1.69
10121852--10121970	62	1.9	63	87	1	177	38	9	21	31	1.84
10123010--10123320	42	7.4	41	80	6	261	27	14	20	37	1.91
10123010--10123321	84	3.7	84	84	3	373	27	14	20	37	1.91
10123042--10123320	126	2.2	124	83	3	344	27	14	20	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10123317--10123658	44	7.7	44	84	4	429	23	13	22	40	1.89
10127206--10127347	59	2.5	56	86	5	187	41	7	15	35	1.76
10136519--10136565	10	4.7	10	92	5	69	72	14	0	12	1.13
10136977--10137027	3	17.0	3	100	0	102	66	0	0	33	0.92
10138115--10138141	4	6.8	4	100	0	54	77	0	0	22	0.76
10139613--10139650	18	2.2	18	90	4	60	68	0	0	31	0.90
10139739--10139816	41	1.9	39	87	5	111	53	1	1	43	1.16
10139746--10139811	28	2.5	25	73	17	71	56	1	1	40	1.18
10140145--10140186	21	2.0	21	81	9	50	52	0	4	42	1.22
10144694--10144722	3	9.7	3	100	0	58	31	0	0	68	0.89
10145286--10145323	19	2.0	20	84	5	51	18	10	18	52	1.73
10145631--10145671	19	2.2	18	86	4	55	7	7	4	80	1.02
10145667--10145712	20	2.3	19	82	10	56	17	2	10	69	1.27
10145674--10145712	21	1.9	20	89	5	60	15	0	12	71	1.14
10145654--10145717	25	2.5	26	77	10	69	14	1	10	73	1.17
10146286--10146315	14	2.2	13	94	5	51	73	0	0	26	0.84
10149259--10149331	33	2.2	33	87	2	103	49	4	23	23	1.67
10158230--10158305	40	1.9	40	89	2	118	26	13	18	42	1.87
10158473--10158576	40	2.6	41	84	3	129	32	15	14	37	1.88
10158471--10158599	41	3.1	41	80	5	145	31	14	15	38	1.88
10158833--10158870	3	12.7	3	100	0	76	34	31	0	34	1.58
10159160--10159199	21	1.9	21	85	10	55	55	5	27	12	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10159788--10159828	17	2.3	18	87	8	57	9	9	4	75	1.17
10159801--10159864	26	2.4	26	82	17	87	12	3	7	76	1.11
10159801--10159871	25	2.7	24	79	16	79	14	2	8	74	1.16
10160425--10160470	17	2.7	17	86	0	65	76	4	2	17	1.06
10160546--10160608	30	2.1	30	91	2	101	44	11	14	30	1.79
10160785--10160842	3	19.3	3	96	0	107	67	1	0	31	1.01
10163559--10163788	115	2.0	115	97	0	433	28	16	21	33	1.95
10167564--10167591	4	7.0	4	100	0	56	50	0	25	25	1.50
10168578--10168612	16	2.2	16	89	0	52	57	17	0	25	1.40
10171385--10171446	24	2.6	23	68	14	54	4	16	4	74	1.17
10173411--10173457	22	2.1	22	88	0	67	2	6	6	85	0.82
10173409--10173457	18	2.6	18	81	15	55	2	8	6	83	0.87
10174016--10174056	3	13.7	3	100	0	82	34	0	0	65	0.93
10179490--10179524	16	2.2	16	89	0	52	45	11	11	31	1.76
10181256--10181468	41	5.2	39	80	12	221	38	21	16	23	1.92
10181293--10181468	82	2.1	82	90	2	273	40	20	15	23	1.90
10182479--10182538	7	8.1	7	84	12	59	8	8	1	81	0.93
10182483--10182535	7	6.9	8	91	8	76	9	9	1	79	1.02
10192924--10193252	57	5.7	57	83	7	306	36	12	6	44	1.68
10193270--10193345	5	14.6	5	78	17	68	77	0	5	17	0.94
10193269--10193345	17	4.9	16	75	22	74	76	0	6	16	0.98
10193270--10193345	6	12.3	6	73	19	59	77	0	5	17	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10193282--10193354	17	4.4	17	76	13	71	73	0	6	19	1.04
10193436--10193476	18	2.3	18	91	0	64	4	26	39	29	1.77
10193784--10193841	22	2.6	23	75	10	57	60	5	5	29	1.40
10193990--10194020	7	4.6	7	92	8	55	74	12	0	12	1.08
10193985--10194019	13	2.8	13	95	4	63	74	11	0	14	1.08
10195267--10195300	15	2.3	15	90	10	52	8	17	5	67	1.37
10201619--10201658	20	2.0	21	85	14	57	50	17	7	25	1.72
10201998--10202270	144	1.9	145	78	6	304	31	14	13	40	1.85
10202711--10202761	21	2.3	24	71	21	58	25	19	0	54	1.44
10203332--10203363	16	2.0	16	100	0	64	12	12	12	62	1.55
10203522--10203560	19	2.0	20	90	5	62	17	17	28	35	1.94
10214734--10214780	12	3.8	12	81	13	51	68	0	2	29	1.02
10214735--10214782	20	2.3	20	82	3	60	68	0	2	29	1.01
10214821--10214850	3	10.0	3	92	0	51	66	3	0	30	1.07
10221985--10222093	52	2.1	52	81	8	125	75	0	18	6	1.01
10225482--10225592	37	3.0	37	82	0	141	45	12	22	19	1.84
10225822--10226097	114	2.4	114	74	5	263	44	11	22	21	1.84
10226945--10226992	13	3.8	12	78	8	51	8	10	0	81	0.88
10226945--10226994	19	2.6	19	81	12	59	8	12	0	80	0.92
10227224--10227259	14	2.7	13	87	8	54	0	11	0	88	0.50
10227224--10227259	16	2.2	16	90	9	56	0	11	0	88	0.50
10227194--10227327	67	2.0	68	84	7	175	12	17	9	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10231008--10231036	10	2.7	11	89	10	51	31	0	0	68	0.89
10231113--10231154	16	2.8	15	80	19	52	71	0	9	19	1.13
10231111--10231177	26	2.6	24	79	13	71	68	0	8	22	1.17
10232298--10232394	30	3.1	30	75	15	90	5	22	2	70	1.18
10235078--10235129	25	2.0	26	85	3	70	63	7	1	26	1.32
10235104--10235304	102	2.0	102	92	0	339	33	19	14	32	1.92
10236834--10236946	19	5.8	20	72	9	81	23	12	22	41	1.87
10236852--10236972	39	3.1	38	72	4	116	22	10	23	43	1.84
10237217--10237259	16	2.6	17	78	10	54	25	4	0	69	1.07
10237626--10237650	13	1.9	13	100	0	50	28	0	0	72	0.86
10239049--10239075	2	13.5	2	100	0	54	48	0	0	51	1.00
10239452--10239500	20	2.5	20	86	3	64	57	30	0	12	1.36
10239398--10239559	31	5.2	31	75	4	128	49	31	1	17	1.57
10239432--10239644	7	32.7	7	66	17	93	46	33	0	18	1.55
10239398--10239644	19	12.8	19	70	17	90	47	32	1	18	1.56
10239591--10239639	24	2.0	26	84	8	66	42	38	0	18	1.50
10251158--10251234	21	3.8	20	77	3	73	18	20	27	33	1.96
10254582--10254609	3	9.3	3	100	0	56	67	0	0	32	0.91
10254910--10256278	119	11.6	119	80	3	1291	46	14	20	18	1.84
10255867--10256048	56	3.1	54	70	15	148	42	14	22	20	1.89
10255925--10256120	62	3.3	61	69	20	169	44	14	21	19	1.86
10260832--10260860	14	2.0	15	93	6	51	10	34	13	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10268273--10268348	26	2.9	26	86	0	107	30	26	27	15	1.96
10270261--10270380	57	2.1	57	92	1	197	24	15	25	34	1.95
10270381--10270654	138	2.0	138	94	0	476	20	13	11	54	1.70
10271221--10271583	176	2.1	177	94	0	638	20	12	15	50	1.76
10273953--10273999	23	2.0	23	87	0	67	44	2	25	27	1.65
10279373--10279779	49	8.2	48	76	9	263	32	13	12	41	1.81
10281652--10281739	27	3.3	27	88	3	124	44	34	4	17	1.69
10281737--10281846	12	8.4	12	69	17	51	48	33	1	16	1.57
10281746--10281804	31	1.9	31	86	6	84	45	30	3	20	1.67
10281737--10281889	43	3.4	42	78	11	128	49	32	1	16	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117