genome.fa.s90.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  66  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14322811--14322964	6	28.2	5	73	20	98	70	1	7	20	1.18
14322811--14322964	11	14.1	10	74	20	98	70	1	7	20	1.18
14322821--14322964	35	3.9	36	80	14	129	70	1	7	20	1.19
14324920--14324963	23	1.9	23	95	0	79	25	18	4	52	1.64
14330498--14330535	10	3.8	10	90	10	60	50	0	7	42	1.31
14334291--14334613	137	2.3	141	84	8	417	42	13	11	31	1.80
14337412--14337463	24	2.1	25	85	7	70	51	11	0	36	1.38
14337557--14338005	20	22.4	20	73	13	300	53	12	5	28	1.59
14337557--14338009	41	11.3	41	79	8	404	54	11	5	28	1.59
14337558--14337976	120	3.5	123	80	6	355	53	11	5	29	1.58
14337791--14337951	76	2.1	75	85	7	220	54	11	5	29	1.58
14337642--14338009	117	3.1	117	75	14	326	54	11	5	27	1.58
14337761--14338028	137	2.0	137	83	5	346	54	11	5	29	1.57
14337988--14338038	16	3.2	16	79	20	70	56	11	3	27	1.52
14338929--14339147	41	5.2	41	80	10	230	38	21	12	27	1.89
14340600--14340644	1	45.0	1	81	0	54	2	2	4	91	0.57
14340600--14340644	13	3.5	13	87	0	63	2	2	4	91	0.57
14340599--14340645	23	2.0	23	88	8	69	2	2	8	87	0.71
14340623--14340747	62	2.0	60	89	3	187	12	20	2	64	1.39
14340744--14340828	44	1.9	44	95	0	152	24	29	3	42	1.71
14342031--14342088	30	1.9	30	92	0	98	27	8	25	37	1.85
14347493--14347550	14	3.8	15	77	15	57	56	10	6	25	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14347605--14348097	20	24.6	20	76	14	414	52	12	5	29	1.61
14347605--14348097	41	12.3	40	80	9	437	52	12	5	29	1.61
14347604--14348159	82	7.0	79	79	12	311	52	12	5	29	1.61
14347792--14347825	16	2.1	16	88	0	50	52	8	2	35	1.47
14348095--14348159	21	3.1	21	65	20	55	56	10	7	24	1.59
14350087--14350121	12	3.0	11	91	8	52	8	11	8	71	1.31
14351198--14351235	17	2.2	17	100	0	76	36	18	10	34	1.85
14354404--14354434	8	3.9	8	100	0	62	35	12	0	51	1.40
14354862--14354898	16	2.2	18	85	9	51	29	2	13	54	1.53
14358638--14358713	33	2.3	33	97	0	143	22	25	6	46	1.76
14365451--14365484	17	2.0	17	88	11	52	35	0	2	61	1.11
14365545--14365588	3	14.7	3	100	0	88	34	0	0	65	0.93
14366394--14366476	9	9.3	9	72	12	55	18	2	2	77	0.99
14366388--14366446	17	3.5	17	81	9	66	15	5	1	77	1.01
14366418--14366468	21	2.5	20	81	15	59	21	1	1	74	1.02
14369584--14369626	11	3.9	11	78	0	50	20	2	27	48	1.62
14369651--14369807	52	3.0	52	84	1	190	40	8	23	26	1.84
14370363--14370448	24	3.5	25	79	7	88	37	6	34	20	1.80
14370363--14370465	25	4.2	25	79	7	84	37	5	33	22	1.78
14370794--14370918	52	2.4	52	91	0	196	36	8	25	28	1.86
14371798--14371831	8	4.5	8	85	14	54	50	0	11	38	1.39
14373577--14373614	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14375493--14375547	28	1.9	29	85	3	76	25	0	3	70	1.03
14376646--14376734	7	12.6	7	74	15	60	17	1	4	76	1.02
14376654--14376719	12	5.5	12	75	12	55	19	0	3	77	0.90
14376687--14376719	8	3.9	9	88	11	52	27	0	0	72	0.85
14376661--14376724	24	2.7	24	83	9	78	21	0	3	75	0.95
14376664--14376719	17	3.4	16	81	15	71	23	0	1	75	0.90
14376647--14376734	15	5.8	15	79	13	65	18	1	4	76	1.02
14377007--14378433	47	29.9	48	81	6	1433	37	23	11	27	1.89
14377007--14378433	96	15.0	96	82	6	1534	37	23	11	27	1.89
14391068--14391110	8	4.9	8	79	20	50	20	0	0	79	0.74
14391069--14391183	25	4.5	26	73	11	76	26	0	3	69	1.04
14393214--14393242	15	1.9	15	100	0	58	34	10	34	20	1.87
14398316--14398345	15	2.1	14	93	6	51	90	0	0	10	0.47
14404566--14404602	2	18.5	2	100	0	74	0	51	0	48	1.00
14414063--14414193	70	1.9	70	88	6	203	33	19	9	36	1.85
14421488--14421538	19	2.7	19	75	0	57	23	17	11	47	1.81
14422572--14422611	16	2.5	17	84	8	57	32	15	0	52	1.43
14423004--14423046	22	2.0	22	86	4	61	27	4	18	48	1.68
14423955--14423981	14	1.9	14	100	0	54	29	3	22	44	1.70
14425461--14425509	3	16.3	3	100	0	98	67	0	0	32	0.91
14425613--14425647	11	3.3	10	88	11	52	71	2	0	25	1.00
14425606--14425647	22	1.9	21	85	9	57	71	4	0	23	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14425609--14425649	11	3.7	11	76	23	50	70	2	0	26	0.99
14432454--14432818	180	2.0	181	86	2	511	45	15	13	24	1.83
14433720--14433761	19	2.2	19	83	8	50	71	0	16	11	1.14
14434096--14434120	11	2.3	11	100	0	50	84	8	0	8	0.79
14434660--14434821	83	2.0	83	81	0	189	37	23	9	29	1.87
14435158--14435305	70	2.1	70	81	2	172	38	18	12	29	1.89
14435240--14435352	44	2.7	43	84	5	140	39	21	9	29	1.85
14435514--14435567	12	4.2	12	79	11	54	27	20	9	42	1.82
14435981--14436051	21	3.2	21	71	16	54	39	19	11	29	1.87
14436077--14436277	101	2.0	101	93	0	341	35	17	11	34	1.87
14436985--14437395	144	2.8	145	77	9	399	35	14	10	40	1.80
14437869--14437923	25	2.4	25	85	11	73	63	1	27	7	1.31
14438025--14438100	27	2.7	26	80	11	80	34	1	5	59	1.28
14438113--14438179	28	2.3	31	82	7	86	43	0	2	53	1.16
14451176--14451201	12	2.2	12	100	0	52	30	15	26	26	1.96
14453911--14453967	28	2.0	28	86	0	78	38	5	3	52	1.41
14455353--14455396	16	2.8	15	83	10	61	70	4	0	25	1.06
14456293--14456341	24	2.1	23	81	11	55	75	0	14	10	1.04
14456408--14456548	54	2.6	54	93	0	228	34	10	11	43	1.75
14456552--14456583	16	2.0	16	93	0	55	34	0	3	62	1.11
14456555--14456595	16	2.6	16	81	11	50	39	2	4	53	1.35
14456507--14456753	71	3.5	68	81	8	250	33	7	7	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14456693--14456725	14	2.3	15	89	5	50	27	0	9	63	1.24
14456807--14456851	9	4.7	9	79	15	54	86	0	2	11	0.65
14456808--14456862	24	2.3	24	81	6	67	81	0	3	14	0.82
14456812--14456859	24	2.0	24	88	4	71	81	0	4	14	0.84
14456812--14456859	23	2.0	23	88	11	71	81	0	4	14	0.84
14459043--14459080	20	1.9	20	84	10	51	5	34	0	60	1.19
14459970--14460006	13	2.8	13	95	0	65	8	43	0	48	1.32
14461084--14463455	934	2.5	931	86	4	3139	31	18	12	37	1.88
14463500--14463671	44	3.9	44	80	9	136	43	18	13	23	1.86
14463522--14463683	44	3.6	43	80	11	157	44	17	15	22	1.86
14463647--14463943	45	7.0	42	80	6	244	44	20	11	23	1.84
14464038--14464091	19	2.8	19	91	0	90	29	24	16	29	1.97
14464131--14464179	22	2.2	22	82	10	55	40	12	14	32	1.83
14464138--14464184	22	2.1	23	84	11	62	38	12	14	34	1.85
14464301--14464347	22	2.2	21	88	3	67	40	17	6	36	1.75
14465450--14465496	14	3.2	15	82	14	62	4	12	0	82	0.80
14465458--14465497	13	3.0	13	89	10	55	5	12	0	82	0.82
14466349--14466392	22	2.0	22	86	8	63	52	13	2	31	1.53
14471518--14471753	62	4.1	59	79	13	222	35	9	6	48	1.63
14471729--14471763	15	2.2	16	90	5	54	31	0	2	65	1.07
14471729--14471770	16	2.6	17	82	17	54	38	0	4	57	1.20
14471872--14471910	15	2.6	15	88	8	53	41	0	2	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14471673--14471931	71	3.6	71	85	2	358	37	8	4	50	1.53
14471683--14471948	143	1.9	143	90	3	430	37	9	3	50	1.52
14471988--14472029	16	2.7	15	85	7	66	80	0	0	19	0.70
14472066--14472097	3	10.7	3	100	0	64	68	0	0	31	0.90
14472093--14472118	4	6.5	4	100	0	52	76	0	0	23	0.78
14479409--14479485	39	2.0	39	89	0	118	33	29	7	28	1.85
14482260--14482297	19	2.0	19	85	10	51	60	0	0	39	0.97
14483149--14483224	34	2.3	34	93	2	127	47	11	3	36	1.59
14483854--14483909	12	4.6	12	74	12	51	53	0	0	46	1.00
14483861--14483920	27	2.3	27	83	8	72	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117