genome.fa.s90.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  40  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9667191--9667249	25	2.4	25	91	0	91	57	0	11	30	1.35
9667389--9667447	31	1.9	31	82	6	75	54	8	0	37	1.31
9676265--9676318	20	2.7	20	77	11	56	38	0	1	59	1.08
9676265--9676318	7	8.0	7	76	13	51	38	0	1	59	1.08
9677681--9677719	3	12.7	3	89	5	60	30	0	2	66	1.05
9677691--9677747	16	3.4	16	81	11	53	42	0	1	56	1.10
9678024--9678077	27	2.0	27	85	0	72	37	11	7	44	1.68
9678051--9678095	22	2.0	22	82	0	54	31	13	13	42	1.82
9678094--9678170	22	3.5	22	80	5	84	42	9	5	42	1.58
9678086--9678184	22	4.5	21	78	7	74	41	10	5	43	1.60
9679049--9679111	21	2.9	22	78	4	65	39	12	3	44	1.59
9679099--9679155	22	2.6	22	74	0	60	40	3	5	50	1.42
9679242--9679299	21	2.7	21	75	2	62	41	15	1	41	1.57
9679432--9679673	44	5.3	44	70	17	138	35	7	7	50	1.56
9679449--9679673	22	9.8	23	70	17	107	34	6	7	51	1.57
9679578--9679722	68	2.2	67	81	9	179	35	8	6	49	1.59
9679578--9679726	66	2.2	65	80	9	167	35	8	6	49	1.58
9679747--9679832	22	3.9	22	72	11	59	34	8	6	50	1.59
9679935--9679994	21	2.6	22	76	19	68	35	10	5	50	1.58
9680014--9680075	22	2.9	21	85	2	79	35	6	4	53	1.48
9680025--9680077	11	4.9	11	79	4	54	35	5	5	52	1.49
9680038--9680077	21	1.9	21	94	0	71	35	2	5	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9680038--9680084	21	2.2	21	88	0	67	34	4	4	57	1.38
9681968--9681998	2	15.0	2	93	6	53	48	0	3	48	1.17
9682396--9682449	2	27.0	2	100	0	108	50	0	0	50	1.00
9683235--9683339	31	3.4	31	73	8	90	39	17	17	26	1.91
9683396--9683513	61	1.9	61	83	6	150	32	13	22	31	1.93
9683705--9683806	51	2.0	52	88	1	152	50	6	15	27	1.70
9684245--9684344	31	3.3	30	78	12	96	37	19	17	27	1.93
9686178--9686224	24	2.0	24	83	8	60	42	2	0	55	1.12
9688161--9688203	21	2.0	21	86	0	59	46	16	9	27	1.77
9688198--9688395	62	3.2	60	77	12	202	32	11	14	41	1.81
9689602--9689675	18	4.0	18	75	19	64	64	6	0	28	1.18
9691333--9691375	23	1.9	23	85	4	61	60	0	6	32	1.23
9691410--9691458	9	5.2	9	79	16	55	73	2	2	22	1.04
9691412--9691473	9	6.9	9	73	23	51	74	1	1	22	1.00
9691410--9691470	19	3.3	19	80	15	65	73	1	1	22	1.01
9691392--9691470	27	2.8	28	80	3	79	70	2	2	24	1.11
9694391--9694441	26	2.0	26	100	0	102	58	0	7	33	1.27
9707403--9707482	3	27.0	3	92	2	126	62	1	1	35	1.11
9707604--9707662	14	4.2	14	75	0	55	55	25	1	16	1.50
9707643--9707737	29	3.2	29	79	7	111	48	33	0	17	1.48
9711144--9711216	4	18.5	4	76	8	60	24	21	4	49	1.67
9712856--9712903	7	6.4	7	79	13	51	81	2	16	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9712847--9712898	12	4.5	11	77	17	52	84	1	11	1	0.78
9712848--9712904	18	3.0	18	80	12	60	80	1	15	1	0.87
9714072--9714106	15	2.3	15	90	5	52	77	2	20	0	0.90
9714989--9715067	31	2.5	31	85	4	95	31	18	13	35	1.91
9715132--9715304	65	2.7	64	73	7	150	35	16	11	36	1.85
9715431--9715501	37	1.9	37	86	8	101	19	15	18	46	1.84
9715628--9715698	22	3.2	22	72	7	81	30	22	14	32	1.93
9715707--9715792	36	2.4	36	78	3	93	20	23	19	36	1.95
9715824--9715993	36	4.7	36	72	8	139	23	20	13	42	1.87
9716288--9716334	16	2.9	17	82	17	64	57	0	0	42	0.98
9717623--9717660	19	2.0	20	89	5	60	65	0	5	28	1.14
9717740--9717777	18	2.1	18	85	9	51	71	0	0	28	0.87
9717774--9717819	3	15.3	3	95	0	83	65	0	0	34	0.93
9718068--9718097	16	1.9	15	93	6	51	46	33	0	20	1.51
9719877--9719958	30	2.9	28	81	12	96	78	7	4	9	1.10
9719877--9719954	13	5.5	14	69	14	61	78	7	3	10	1.08
9719904--9719965	30	2.1	30	82	8	74	79	4	8	8	1.07
9720102--9720148	22	2.3	19	80	20	51	25	8	8	57	1.57
9720268--9720318	24	2.1	24	85	7	68	52	5	0	41	1.25
9726991--9727171	82	2.2	82	82	5	215	28	39	12	19	1.88
9728042--9728095	27	2.0	27	96	0	99	33	5	7	53	1.52
9729374--9729403	10	3.1	10	95	4	53	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9729376--9729405	9	3.2	9	95	4	51	36	0	0	63	0.95
9730058--9730108	13	3.6	14	82	17	61	49	0	0	50	1.00
9730061--9730108	14	3.3	15	78	21	57	50	0	0	50	1.00
9738639--9738679	17	2.3	18	87	4	57	14	4	0	80	0.87
9738636--9738714	12	6.9	12	80	11	60	15	3	3	77	1.06
9738977--9739008	16	2.0	16	93	0	55	71	3	0	25	1.00
9739558--9739605	16	3.0	16	82	14	55	77	2	0	20	0.88
9739567--9739603	17	2.2	16	90	4	56	81	2	0	16	0.81
9741654--9741691	18	2.1	18	95	0	67	44	7	13	34	1.72
9744165--9744235	6	11.8	6	92	0	106	67	12	0	19	1.22
9745066--9745548	143	3.4	143	79	3	517	40	12	14	32	1.83
9746462--9746518	30	1.9	30	85	0	78	49	12	21	17	1.79
9746543--9746687	35	4.2	34	73	10	116	44	11	23	21	1.84
9746697--9746795	35	2.8	35	71	0	90	50	13	16	20	1.77
9746682--9746816	70	1.9	70	82	5	166	50	13	14	21	1.77
9746968--9747177	106	2.0	106	84	5	273	50	9	15	24	1.73
9746968--9747291	35	9.2	35	69	8	131	50	10	16	22	1.75
9747015--9747292	35	7.9	35	70	9	136	51	11	15	21	1.74
9747292--9747421	36	3.6	35	76	4	118	50	13	15	20	1.77
9747291--9747463	72	2.4	74	80	7	176	53	13	13	19	1.72
9747730--9747932	66	3.1	66	73	11	200	32	14	19	33	1.92
9747729--9747920	33	5.8	33	72	11	108	31	15	19	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9748466--9748520	22	2.5	21	83	13	67	20	10	25	43	1.84
9758241--9758293	7	7.8	6	82	17	52	73	0	0	26	0.83
9758250--9758318	20	3.5	20	76	9	61	72	1	4	21	1.10
9758242--9758303	28	2.2	28	88	5	90	74	0	1	24	0.91
9758241--9758295	13	4.0	13	78	17	58	72	0	0	27	0.85
9759873--9759942	28	2.5	28	80	0	95	34	15	15	34	1.90
9759988--9760061	35	2.1	35	87	2	105	36	12	13	37	1.82
9760134--9760237	51	2.0	51	83	3	129	45	17	10	26	1.81
9760181--9760281	34	3.0	33	71	8	96	46	12	8	31	1.73
9760198--9760293	17	5.7	17	65	7	52	46	12	9	31	1.73
9760306--9760385	35	2.3	35	80	4	90	38	22	10	28	1.86
9766935--9766981	13	3.4	14	80	13	53	78	8	4	8	1.07
9767453--9767497	20	2.2	20	88	7	65	53	22	2	22	1.57
9767465--9767503	20	2.0	20	89	0	60	53	23	2	20	1.57
9771368--9771423	3	19.0	3	96	3	105	33	0	0	66	0.92
9783792--9784240	238	1.9	238	86	4	647	33	12	12	42	1.80
9784690--9784873	91	2.0	91	89	0	278	33	19	10	36	1.86
9785529--9785709	90	2.0	90	98	0	353	39	7	16	35	1.77
9789498--9789608	54	2.1	53	96	1	204	32	16	3	47	1.63
9795603--9795709	6	17.5	6	85	2	133	28	2	5	63	1.31
9796294--9796341	19	2.6	18	87	12	62	14	4	20	60	1.51
9796798--9796843	23	2.0	24	86	4	67	13	2	2	82	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9796795--9796875	23	3.6	22	77	11	58	11	6	2	80	0.99
9796815--9796883	8	8.4	8	71	17	52	10	7	1	81	0.94
9796796--9796890	42	2.2	42	82	10	113	10	7	3	78	1.05
9796969--9797011	20	2.2	20	86	0	59	34	13	11	39	1.82
9797001--9797039	19	2.1	19	90	0	60	28	5	5	61	1.39
9797105--9797195	33	2.8	33	85	8	125	30	8	10	49	1.68
9797122--9797184	19	3.6	19	74	24	66	31	6	11	50	1.63
9803435--9803503	21	3.1	22	77	10	61	73	4	7	14	1.20
9803718--9803765	22	2.2	22	84	0	60	41	8	2	47	1.45
9804035--9804080	23	2.0	23	82	0	56	50	0	4	45	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117