genome.fa.s90.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  110  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19937250--19937630	171	2.2	171	82	2	455	21	29	32	16	1.95
19937501--19939694	702	3.1	712	86	3	3027	25	23	23	27	2.00
19940522--19940573	25	2.0	26	88	3	79	26	17	25	30	1.97
19941409--19941461	26	2.0	26	92	0	88	24	18	26	30	1.98
19941435--19941786	159	2.2	159	85	1	454	24	29	26	19	1.99
19942031--19942083	26	2.0	26	88	0	79	28	15	26	30	1.96
19942899--19942971	26	2.8	26	93	0	128	30	19	23	27	1.98
19943828--19943880	26	2.0	26	100	0	106	26	20	26	26	1.99
19941801--19948844	903	7.9	895	84	5	8373	25	24	25	25	2.00
19945601--19945653	26	2.0	26	88	0	79	28	22	22	26	1.99
19946501--19946573	26	2.8	26	100	0	146	27	23	23	26	2.00
19944735--19948844	895	4.6	902	85	5	5247	24	24	25	25	2.00
19947422--19947474	26	2.0	26	96	0	97	28	20	24	26	1.99
19948968--19949020	26	2.0	26	92	7	90	28	22	22	26	1.99
19949863--19949915	26	2.0	26	92	0	88	30	18	24	26	1.98
19950768--19950823	26	2.2	26	90	0	85	26	17	26	28	1.98
19952512--19952564	26	2.0	26	85	0	70	30	18	20	30	1.97
19953406--19953458	26	2.0	26	96	0	97	26	18	28	26	1.98
19954306--19954358	26	2.0	26	92	0	88	28	15	26	30	1.96
19951899--19968854	900	18.9	898	73	13	10436	25	24	24	25	2.00
19955158--19955210	26	2.0	26	96	0	97	26	18	26	28	1.98
19956058--19956110	26	2.0	26	88	0	79	24	16	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19957748--19957800	26	2.0	26	92	0	88	28	16	26	28	1.97
19958637--19958689	26	2.0	26	100	0	106	30	20	22	26	1.98
19958705--19958753	20	2.5	20	100	0	98	34	24	28	12	1.91
19959765--19959816	26	2.0	25	88	3	77	26	23	23	26	2.00
19960659--19960714	26	2.2	26	93	0	94	28	14	25	32	1.94
19959500--19968854	895	10.5	895	85	4	12003	25	24	24	25	2.00
19964216--19964267	25	2.0	26	96	3	97	28	21	23	26	1.99
19965992--19966044	26	2.0	26	88	0	79	26	18	22	32	1.97
19966877--19966928	26	2.0	26	92	0	86	30	19	23	26	1.98
19968660--19968710	26	2.0	26	100	0	102	27	17	27	27	1.98
19970374--19970426	26	2.0	26	92	0	88	22	22	28	26	1.99
19968846--19971312	893	2.8	886	88	3	3454	25	23	23	26	2.00
19971255--19971306	26	2.0	26	96	0	95	28	19	25	26	1.98
19971473--19972241	390	2.0	390	87	2	1125	21	29	28	19	1.98
19976180--19977187	522	1.9	521	91	1	1642	27	19	22	30	1.98
19977334--19977386	26	2.0	26	96	0	97	28	20	26	24	1.99
19978210--19978262	26	2.0	26	96	0	97	28	20	26	24	1.99
19976688--19981006	876	4.9	884	86	4	5609	25	23	24	25	2.00
19979110--19979162	26	2.0	26	96	0	97	26	22	26	24	2.00
19979991--19980043	26	2.0	26	92	0	88	26	18	24	30	1.98
19980888--19980940	26	2.0	26	96	0	97	26	18	26	28	1.98
19981595--19981647	26	2.0	26	96	0	97	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19981512--19984721	905	3.6	898	87	3	4553	24	24	26	24	2.00
19983394--19983446	26	2.0	26	96	0	97	26	18	26	28	1.98
19986506--19986558	26	2.0	26	96	0	97	26	18	26	28	1.98
19988388--19988440	26	2.0	26	85	0	70	28	16	26	28	1.97
19986532--19988453	986	1.9	986	89	0	2968	25	24	25	25	2.00
19990754--19990804	26	2.0	26	100	0	102	27	19	25	27	1.99
19991636--19991688	26	2.0	26	96	0	97	26	18	26	28	1.98
19992536--19992585	26	1.9	26	95	0	91	30	20	24	26	1.98
19990134--19993636	882	4.0	898	82	5	4013	25	24	24	25	2.00
19993421--19993774	159	2.2	159	83	3	435	21	28	29	20	1.98
19994454--19994503	26	1.9	26	95	0	91	30	20	24	26	1.98
19995347--19995399	26	2.0	26	96	0	97	26	22	24	26	2.00
19996187--19996239	26	2.0	26	96	0	97	28	20	24	26	1.99
19997088--19997139	26	2.0	26	92	0	86	30	19	21	28	1.97
19997994--19998046	26	2.0	26	92	0	88	26	18	24	30	1.98
19999728--19999780	26	2.0	26	92	0	88	26	20	24	28	1.99
20000633--20000684	26	2.0	26	96	3	97	30	21	21	26	1.98
19998895--20011475	901	14.0	901	86	3	16015	25	24	25	25	2.00
20001536--20001614	26	3.0	26	83	0	86	31	15	20	32	1.93
20002454--20002519	26	2.5	26	90	0	114	28	18	24	28	1.98
20003363--20003415	26	2.0	26	88	0	79	28	16	24	30	1.97
20004266--20004315	26	1.9	26	87	0	73	28	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20005163--20005215	26	2.0	26	92	0	88	28	18	24	28	1.98
20006064--20006115	26	2.0	26	96	0	95	26	17	26	28	1.97
20006969--20007021	26	2.0	26	88	0	79	24	20	24	30	1.99
20007867--20007919	26	2.0	26	88	0	79	26	18	24	30	1.98
20008773--20008825	26	2.0	26	92	0	88	26	16	26	30	1.97
20010567--20010619	26	2.0	26	96	0	97	28	20	24	26	1.99
20011947--20011999	26	2.0	26	92	0	88	26	20	24	28	1.99
20012843--20012895	26	2.0	26	88	0	79	30	20	20	28	1.98
20013746--20013798	26	2.0	26	88	0	79	28	16	24	30	1.97
20011799--20020727	897	10.0	901	84	5	10791	24	24	25	25	2.00
20014646--20014698	26	2.0	26	88	0	79	26	13	22	37	1.91
20015543--20015595	26	2.0	26	88	0	79	28	20	24	26	1.99
20016399--20016451	26	2.0	26	92	0	88	26	16	26	30	1.97
20019963--20020015	26	2.0	26	100	0	106	26	20	26	26	1.99
20020872--20021003	4	31.5	4	68	18	56	28	1	3	66	1.17
20020869--20020935	21	3.3	20	80	12	75	25	1	2	70	1.10
20020878--20020967	21	4.2	20	71	20	65	26	1	3	68	1.11
20020878--20021008	16	8.1	17	69	25	63	29	1	3	66	1.16
20020957--20021008	17	2.9	18	83	13	63	32	1	1	63	1.16
20021625--20021662	20	1.9	20	88	0	58	44	31	10	13	1.77
20022053--20022092	17	2.4	16	84	8	53	22	5	0	72	1.04
20022079--20022126	17	2.8	17	78	9	53	12	6	2	79	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20022079--20022136	14	4.2	14	76	8	57	13	6	1	77	1.05
20022102--20022141	14	2.5	17	73	23	50	15	10	0	75	1.05
20022144--20022439	118	2.5	117	88	4	443	45	7	12	34	1.71
20022144--20022439	58	5.0	59	87	6	420	45	7	12	34	1.71
20026311--20026385	29	2.5	30	82	2	89	76	0	17	6	1.00
20027630--20028287	41	16.1	41	85	5	881	23	16	23	36	1.94
20027630--20027868	83	2.9	84	93	2	394	23	17	23	35	1.95
20027841--20027897	29	2.0	29	100	0	114	28	17	22	31	1.97
20027798--20027938	71	2.0	69	88	2	210	24	16	24	35	1.95
20027868--20028287	83	5.1	83	96	0	718	23	16	23	36	1.94
20028294--20028343	1	50.0	1	79	0	55	90	10	0	0	0.47
20028294--20028343	11	4.5	11	87	7	75	90	10	0	0	0.47
20028294--20028343	20	2.5	19	87	9	73	90	10	0	0	0.47
20028294--20028343	10	5.4	9	84	11	66	90	10	0	0	0.47
20028533--20028662	12	11.1	12	67	23	64	25	1	3	70	1.11
20028536--20028650	4	28.8	4	69	18	62	26	1	3	68	1.15
20028531--20028625	42	2.3	40	78	10	104	25	1	4	69	1.13
20028641--20028680	12	3.2	12	86	10	53	17	2	2	77	0.99
20029252--20029298	20	2.3	20	81	0	58	42	19	23	14	1.88
20029614--20029759	12	12.0	11	68	20	60	15	2	4	77	1.05
20029614--20029678	17	3.8	17	78	6	51	10	1	4	83	0.87
20029625--20029762	17	7.6	17	66	22	59	16	2	4	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20029713--20029769	6	9.5	6	80	16	57	12	3	1	82	0.87
20029713--20029774	28	2.2	28	80	8	72	12	4	1	80	0.94
20029777--20030071	58	5.0	59	86	5	400	45	7	12	34	1.71
20029777--20030071	118	2.5	117	87	4	423	45	7	12	34	1.71
20030665--20030717	26	2.0	26	92	7	90	32	22	18	26	1.97
20031558--20031610	26	2.0	26	96	0	97	28	20	24	26	1.99
20032458--20032510	26	2.0	26	85	0	70	28	22	22	26	1.99
20030557--20037052	902	7.2	901	85	3	8105	25	24	24	25	2.00
20033360--20033410	26	2.0	26	92	0	84	27	15	25	31	1.96
20034263--20034315	26	2.0	26	96	0	97	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117