genome.fa.s90.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  90  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17369154--17369206	26	2.0	26	96	0	97	24	20	28	26	1.99
17371994--17374316	902	2.6	902	87	2	3256	25	23	24	26	2.00
17375037--17375089	26	2.0	26	92	0	88	28	18	26	26	1.98
17375939--17376005	26	2.6	26	87	0	107	29	22	25	22	1.99
17376858--17376935	26	3.0	26	98	1	149	26	19	26	26	1.99
17377787--17377842	26	2.2	26	90	0	85	26	19	23	30	1.98
17378684--17378739	26	2.2	26	96	0	103	28	19	23	28	1.98
17374314--17383589	900	10.3	898	85	4	11215	25	23	25	25	2.00
17379584--17379633	26	1.9	26	100	0	100	30	20	26	24	1.98
17374314--17383589	902	10.3	901	85	4	11187	25	23	25	25	2.00
17380489--17380564	26	2.9	26	100	0	152	30	19	26	23	1.98
17383187--17383236	26	2.0	25	88	4	73	28	22	26	24	1.99
17384870--17384922	26	2.0	26	100	0	106	26	20	26	26	1.99
17386624--17386676	26	2.0	26	85	0	70	28	15	24	32	1.95
17389289--17389341	26	2.0	26	96	0	97	28	20	24	26	1.99
17390187--17390239	26	2.0	26	92	0	88	30	20	22	26	1.98
17385759--17395541	899	11.0	897	86	3	12188	25	24	24	25	2.00
17391979--17392031	26	2.0	26	96	0	97	26	18	26	28	1.98
17392882--17392934	26	2.0	26	100	0	106	26	20	26	26	1.99
17394643--17394695	26	2.0	26	96	0	97	26	18	26	28	1.98
17395042--17395098	26	2.2	26	83	0	69	24	7	8	59	1.52
17396880--17396932	26	2.0	26	92	0	88	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17398658--17398710	26	2.0	26	92	0	88	26	16	26	30	1.97
17399530--17399582	26	2.0	26	92	0	88	26	20	26	26	1.99
17400458--17400510	26	2.0	26	96	0	97	26	20	24	28	1.99
17401357--17401409	26	2.0	26	89	7	81	28	16	24	30	1.97
17401948--17402000	26	2.0	26	92	0	88	28	18	24	28	1.98
17400966--17402137	592	2.0	592	88	1	1767	26	26	24	23	2.00
17402182--17402217	11	3.2	11	92	4	54	13	27	58	0	1.36
17401548--17403844	904	2.5	911	86	2	3164	25	24	24	24	2.00
17403771--17403823	26	2.0	26	92	0	88	28	16	26	28	1.97
17404514--17404566	26	2.0	26	92	7	90	28	18	26	26	1.98
17406286--17406336	26	2.0	26	84	0	66	29	17	23	29	1.97
17407185--17407236	26	2.0	26	92	0	86	25	17	28	28	1.97
17403797--17414505	899	12.1	898	76	10	8964	25	23	25	25	2.00
17407605--17407661	26	2.2	26	87	0	78	21	8	12	57	1.61
17408010--17408061	25	2.0	26	92	3	88	25	23	25	26	2.00
17408893--17408945	26	2.0	26	89	7	81	28	20	22	28	1.99
17410670--17410722	26	2.0	26	92	7	90	26	16	26	30	1.97
17413505--17413538	4	8.5	4	93	0	59	2	26	70	0	1.01
17415300--17415352	26	2.0	26	92	0	88	30	18	24	26	1.98
17416189--17416241	26	2.0	26	96	0	97	24	20	28	26	1.99
17416374--17416426	26	2.0	26	96	0	97	28	20	26	24	1.99
17417916--17417971	26	2.2	26	90	0	85	26	14	23	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17418821--17418873	26	2.0	26	100	0	106	26	20	26	26	1.99
17419714--17419766	26	2.0	26	92	0	88	28	18	28	24	1.98
17417869--17419950	893	2.3	895	86	3	2837	24	25	25	25	2.00
17420556--17420608	26	2.0	26	92	0	88	26	20	24	28	1.99
17419951--17422291	893	2.6	893	88	2	3433	25	23	23	26	2.00
17421698--17422897	606	2.0	606	90	1	1915	25	22	24	27	2.00
17422291--17425644	899	3.8	877	80	8	3625	25	23	24	26	2.00
17425918--17425970	26	2.0	26	92	0	88	26	20	24	28	1.99
17425663--17428438	893	3.1	861	83	9	3125	25	24	24	25	2.00
17427678--17427730	26	2.0	26	88	0	79	26	18	28	26	1.98
17428555--17428888	159	2.1	159	83	2	402	22	29	27	20	1.99
17429570--17429620	26	2.0	26	88	0	75	29	11	27	31	1.92
17430481--17430836	159	2.2	159	84	2	446	22	30	27	19	1.98
17431518--17431567	26	1.9	26	95	0	91	30	22	24	24	1.99
17432208--17432260	26	2.0	26	96	0	97	26	18	26	28	1.98
17430937--17433015	690	3.0	690	89	1	3144	25	23	23	27	2.00
17433785--17433837	26	2.0	26	92	0	88	28	18	24	28	1.98
17437841--17437893	26	2.0	26	96	0	97	26	18	26	28	1.98
17438740--17438791	26	2.0	26	96	0	95	26	17	26	28	1.97
17435443--17443201	891	8.8	896	85	4	9736	25	24	24	25	2.00
17439645--17439697	26	2.0	26	100	0	106	26	20	26	26	1.99
17441399--17441451	26	2.0	26	88	0	79	24	16	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17443048--17443361	158	2.0	163	90	6	502	23	27	26	22	2.00
17443316--17443368	26	2.0	26	96	0	97	26	20	24	28	1.99
17444235--17444287	26	2.0	26	96	0	97	28	20	24	26	1.99
17445142--17445194	26	2.0	26	96	0	97	24	20	28	26	1.99
17446034--17446086	26	2.0	26	88	0	79	24	16	28	30	1.97
17446931--17446983	26	2.0	26	88	0	79	24	18	26	30	1.98
17447790--17447842	26	2.0	26	92	0	88	26	20	26	26	1.99
17448707--17448759	26	2.0	26	96	0	97	28	20	24	26	1.99
17449599--17449651	26	2.0	26	88	0	79	26	18	24	30	1.98
17450497--17450549	26	2.0	26	92	0	88	26	20	24	28	1.99
17451403--17451452	26	2.0	24	92	7	82	26	16	28	30	1.96
17452291--17452343	26	2.0	26	88	0	79	28	16	26	28	1.97
17453183--17453235	26	2.0	26	92	0	88	28	22	22	26	1.99
17453419--17453448	4	7.5	4	92	0	51	0	23	73	3	0.98
17454091--17454143	26	2.0	26	96	0	97	28	20	26	24	1.99
17454819--17454871	26	2.0	26	92	0	88	28	22	20	28	1.99
17455716--17455767	26	2.0	26	84	0	68	30	21	21	26	1.98
17456610--17456662	26	2.0	26	92	0	88	28	18	24	28	1.98
17458393--17458443	26	2.0	26	96	0	93	27	13	29	29	1.94
17459296--17459348	26	2.0	26	96	0	97	26	22	24	26	2.00
17461064--17461116	26	2.0	26	96	0	97	24	20	28	26	1.99
17454184--17469428	895	17.0	892	85	4	18620	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17461965--17462017	26	2.0	26	88	0	79	30	18	22	28	1.98
17462866--17462918	26	2.0	26	96	0	97	28	20	24	26	1.99
17460196--17469428	899	10.3	902	86	3	11838	25	24	24	25	2.00
17465444--17465476	11	3.0	11	95	0	57	21	36	24	18	1.95
17465557--17465609	26	2.0	26	89	7	81	28	16	22	32	1.96
17466457--17466509	26	2.0	26	92	0	88	28	18	24	28	1.98
17468236--17468288	26	2.0	26	85	0	70	30	20	18	30	1.97
17469144--17469196	26	2.0	26	92	0	88	28	16	26	28	1.97
17470450--17470825	158	2.4	159	82	3	436	21	27	30	20	1.98
17471911--17471962	26	2.0	26	88	3	79	30	17	25	26	1.97
17472813--17472865	26	2.0	26	92	0	88	26	16	26	30	1.97
17473712--17473763	26	2.0	26	96	3	97	26	21	25	26	1.99
17471633--17477480	899	6.5	897	85	4	7412	25	24	24	25	2.00
17474604--17474655	26	2.0	25	85	3	68	30	17	23	28	1.97
17477309--17477361	26	2.0	26	100	0	106	26	20	26	26	1.99
17478445--17478497	26	2.0	26	92	0	88	28	22	24	24	2.00
17478399--17479744	678	2.0	677	88	2	1977	25	22	23	28	1.99
17480019--17480071	26	2.0	26	100	0	106	26	20	26	26	1.99
17481606--17481658	26	2.0	26	88	0	79	32	15	26	26	1.95
17485278--17485330	26	2.0	26	92	0	88	28	18	24	28	1.98
17487070--17487122	26	2.0	26	88	0	79	28	16	24	30	1.97
17481808--17495983	893	15.9	895	85	4	17653	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17487951--17488002	26	2.0	25	89	10	79	26	17	26	28	1.97
17488848--17488897	25	2.0	26	88	4	75	28	12	28	32	1.92
17492387--17492438	26	2.0	26	96	0	95	28	19	25	26	1.98
17494183--17494235	26	2.0	26	92	0	88	28	18	24	28	1.98
17497509--17497560	26	2.0	26	92	0	86	28	21	23	26	1.99
17498410--17498462	26	2.0	26	92	0	88	28	18	24	28	1.98
17499300--17499352	26	2.0	26	92	0	88	28	22	22	26	1.99
17495935--17500205	902	4.8	887	85	5	5378	25	24	24	25	2.00
17502357--17502409	26	2.0	26	96	0	97	26	18	26	28	1.98
17500201--17502953	899	3.1	882	82	7	3504	25	23	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117