genome.fa.s90.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  8  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2073732--2073762	2	15.5	2	100	0	62	48	0	0	51	1.00
2077103--2077158	16	3.4	16	70	18	51	53	3	0	42	1.18
2077093--2077160	34	2.0	34	91	0	109	50	4	1	44	1.31
2079075--2079153	27	3.2	27	69	23	91	34	2	15	48	1.58
2079075--2079164	47	1.9	47	100	0	180	34	2	15	47	1.58
2079317--2079343	3	9.0	3	100	0	54	33	0	0	66	0.92
2084848--2084872	11	2.3	11	100	0	50	52	0	0	48	1.00
2084914--2084966	23	2.3	23	87	6	72	54	0	0	45	0.99
2086419--2086446	13	2.2	13	100	0	56	32	14	0	53	1.41
2100861--2100905	22	2.2	20	88	8	63	37	0	13	48	1.42
2101531--2101564	17	2.1	17	88	5	52	47	5	14	32	1.69
2116376--2116407	5	6.8	5	89	10	50	0	12	0	87	0.54
2116376--2116408	14	2.4	14	100	0	66	0	12	0	87	0.53
2117326--2117367	17	2.4	18	80	11	52	23	7	0	69	1.13
2117604--2118680	261	4.0	266	86	7	1338	44	7	8	39	1.64
2117603--2118680	541	2.0	537	89	3	1673	44	7	8	39	1.64
2125612--2125724	41	2.8	41	81	5	131	30	10	16	42	1.82
2125612--2125712	40	2.5	41	83	4	125	28	9	16	44	1.80
2125612--2125724	40	2.8	40	79	5	120	30	10	16	42	1.82
2125704--2125784	42	1.9	42	85	5	110	32	12	13	41	1.82
2125865--2125920	24	2.4	24	84	3	69	26	8	16	48	1.75
2125975--2126094	42	2.9	41	86	4	161	30	7	17	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2126152--2126441	40	7.2	41	72	9	161	31	10	17	40	1.84
2126183--2126292	38	2.8	39	75	6	107	33	11	15	39	1.84
2126182--2126441	119	2.2	118	80	6	285	31	10	17	40	1.84
2128730--2128767	10	4.0	10	80	13	53	47	0	0	52	1.00
2145214--2145238	2	12.5	2	100	0	50	52	0	0	48	1.00
2145772--2145811	21	2.0	20	90	5	62	57	0	0	42	0.98
2166223--2166280	30	2.0	29	86	3	80	36	6	5	51	1.51
2178302--2178337	2	18.0	2	100	0	72	50	0	0	50	1.00
2179643--2179873	115	2.0	115	100	0	462	27	22	15	33	1.95
2188737--2188769	16	2.0	17	94	5	59	30	0	0	69	0.88
2189080--2189125	22	2.1	22	84	8	58	36	0	2	60	1.09
2189079--2189179	30	3.3	29	72	22	73	44	1	1	51	1.24
2190572--2190601	15	2.0	15	93	0	51	56	0	0	43	0.99
2192354--2192484	64	2.0	65	95	1	237	25	22	24	27	2.00
2194250--2194315	27	2.4	27	85	5	80	59	0	6	34	1.22
2196316--2196341	13	2.0	13	100	0	52	30	7	23	38	1.83
2200047--2200168	64	1.9	64	96	0	226	33	15	12	38	1.85
2200494--2200546	27	2.0	27	100	0	106	37	7	11	43	1.69
2201949--2201978	1	30.0	1	100	0	60	0	0	0	100	0.00
2202234--2202262	2	15.0	2	92	7	51	51	0	0	48	1.00
2203083--2203134	2	26.0	2	96	0	95	1	48	0	50	1.12
2203525--2203563	3	13.0	3	88	0	60	71	28	0	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2204095--2204137	21	2.0	22	86	4	61	30	16	25	27	1.97
2216525--2216585	24	2.5	24	86	7	79	63	0	6	29	1.19
2216532--2216610	26	3.1	26	76	7	65	60	1	6	31	1.29
2216744--2216794	24	2.2	23	86	13	70	37	1	0	60	1.08
2219340--2219368	2	14.5	2	100	0	58	0	48	0	51	1.00
2220423--2220452	10	3.1	10	95	4	53	36	0	0	63	0.95
2221504--2221541	12	3.2	12	88	3	60	50	0	0	50	1.00
2221499--2221555	24	2.3	23	78	18	62	50	0	0	49	1.00
2221624--2221671	16	3.0	16	73	11	53	45	2	0	52	1.12
2222035--2222098	26	2.4	28	85	10	82	57	0	3	39	1.14
2223900--2223936	2	18.5	2	100	0	74	51	0	0	48	1.00
2224458--2224524	28	2.3	29	87	7	100	50	0	0	49	1.00
2224467--2224534	28	2.4	28	83	9	86	48	0	0	51	1.00
2225000--2225041	22	2.0	21	90	4	66	61	2	4	30	1.29
2225035--2225091	20	2.8	21	71	7	55	50	0	0	49	1.00
2225071--2225108	18	2.2	18	85	4	51	47	0	0	52	1.00
2225915--2225952	19	2.0	20	84	5	51	47	5	2	44	1.39
2228598--2228632	18	2.0	17	94	5	61	11	14	5	68	1.37
2228699--2228744	24	1.9	24	82	8	58	50	0	8	41	1.33
2233157--2233225	10	7.0	9	82	14	75	82	0	14	2	0.78
2233158--2233261	10	10.2	11	71	15	73	80	0	14	4	0.86
2233159--2233254	33	2.9	31	75	17	54	81	0	14	4	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2233157--2233215	14	4.4	13	78	18	59	83	0	15	1	0.74
2233162--2233277	17	6.9	17	71	24	61	77	0	17	5	0.94
2234941--2234989	20	2.5	20	96	0	89	38	16	16	28	1.90
2235288--2235480	42	4.5	42	85	4	235	25	11	17	45	1.82
2235301--2235480	85	2.1	85	86	4	247	26	11	17	44	1.83
2235316--2235513	85	2.3	85	81	5	229	26	11	16	45	1.81
2235483--2235539	26	2.2	26	87	0	78	29	8	12	49	1.70
2235515--2235781	42	6.4	42	83	5	301	26	12	16	44	1.83
2235515--2235781	83	3.2	84	86	4	344	26	12	16	44	1.83
2235510--2235776	125	2.1	125	83	5	342	26	12	15	45	1.81
2236323--2236383	23	2.6	22	70	27	54	29	1	13	55	1.47
2237008--2237055	25	1.9	25	87	8	71	47	2	6	43	1.40
2241230--2241262	2	16.5	2	100	0	66	51	0	0	48	1.00
2245142--2245184	16	2.7	15	86	10	59	67	4	2	25	1.22
2247931--2247980	23	2.2	22	93	6	91	36	22	10	32	1.87
2249826--2249861	6	6.0	6	96	0	63	0	0	36	63	0.94
2250228--2250274	25	1.9	24	86	4	67	46	2	0	51	1.13
2251542--2251677	68	2.0	68	97	0	254	39	25	14	19	1.90
2256597--2256627	14	2.2	14	94	0	53	70	16	0	12	1.16
2256905--2256973	21	3.3	21	74	6	61	63	0	0	36	0.94
2257061--2257124	27	2.4	27	79	10	69	53	0	0	46	1.00
2257542--2257629	46	2.0	44	88	4	131	27	9	3	60	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2276415--2276469	24	2.3	24	81	15	69	5	40	9	45	1.59
2276640--2276670	3	10.3	3	100	0	62	0	32	0	67	0.91
2279446--2279489	23	1.9	23	85	0	61	36	2	2	59	1.23
2279454--2279482	14	2.0	15	93	6	51	34	0	0	65	0.93
2286772--2286816	22	2.0	22	83	8	56	22	0	2	75	0.91
2298965--2298994	15	2.0	15	100	0	60	13	13	20	53	1.72
2302824--2303111	75	3.9	74	84	3	391	31	29	21	18	1.96
2302826--2303098	150	1.8	150	89	3	433	30	30	21	17	1.97
2303736--2303774	2	19.5	2	100	0	78	51	0	0	48	1.00
2304030--2304062	16	2.1	16	88	11	50	33	6	18	42	1.75
2304231--2304256	13	2.0	13	100	0	52	53	0	0	46	1.00
2304656--2304688	3	11.0	3	100	0	66	33	0	0	66	0.92
2312676--2312753	39	2.0	39	92	0	129	30	10	21	37	1.87
2313187--2313213	2	13.5	2	100	0	54	51	0	0	48	1.00
2321062--2321087	4	6.5	4	100	0	52	46	26	0	26	1.53
2327070--2327106	15	2.5	15	95	0	65	48	5	0	45	1.25
2327070--2327114	15	3.1	15	90	3	56	51	4	0	44	1.21
2330230--2330280	24	2.1	24	92	0	84	49	9	17	23	1.77
2338907--2338958	26	2.0	25	82	10	61	38	7	0	53	1.30
2349034--2349897	432	2.0	432	98	0	1674	31	15	21	31	1.94
2350351--2350416	12	5.3	12	74	12	53	34	0	0	65	0.93
2350368--2350423	22	2.5	22	77	5	60	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2350381--2350419	16	2.4	16	82	0	51	35	0	0	64	0.94
2377854--2377885	13	2.4	14	94	5	57	0	18	0	81	0.70
2388393--2388424	2	16.0	2	100	0	64	50	0	0	50	1.00
2398935--2398960	9	2.9	9	100	0	52	11	30	34	23	1.90
2403592--2403624	3	11.0	3	93	0	57	63	0	0	36	0.95
2403592--2403627	12	3.0	12	95	0	63	61	0	0	38	0.96
2403678--2403712	16	2.1	17	89	5	54	28	0	0	71	0.86
2404259--2404306	22	2.2	22	85	3	62	50	0	0	50	1.00
2405953--2405992	21	2.0	21	85	14	57	47	5	12	35	1.63
2419028--2419077	18	2.7	18	71	3	55	44	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117