genome.fa.s90.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  1  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3116--11977	181	49.6	177	74	10	4775	41	9	8	40	1.68
5121--11977	361	19.2	358	74	9	4037	42	9	8	39	1.68
6109--6159	18	2.8	19	80	17	72	41	11	3	43	1.60
7941--7985	20	2.3	18	85	11	54	37	8	4	48	1.55
7524--11977	719	6.2	716	74	9	2439	42	10	7	39	1.68
7584--11636	541	7.5	535	75	9	1665	42	10	7	39	1.68
12011--13353	178	7.5	178	76	8	1047	41	9	8	40	1.68
12938--13870	492	1.9	493	82	5	1183	43	9	8	38	1.68
13404--14108	177	3.9	176	77	7	613	43	10	7	38	1.69
14144--14844	181	3.9	177	74	5	553	41	9	8	40	1.68
14872--14930	28	2.1	29	83	3	75	47	11	8	32	1.70
15043--15079	18	2.0	19	89	5	58	56	0	2	40	1.13
14562--15220	334	2.0	337	92	1	1108	39	12	8	38	1.75
14900--16644	181	9.6	181	73	9	891	42	10	8	38	1.70
16128--16159	15	2.1	16	94	5	57	65	3	0	31	1.08
15002--16546	735	2.1	719	78	6	1532	42	9	8	38	1.69
16619--16659	21	2.0	21	100	0	82	34	14	4	46	1.66
17001--20518	181	19.5	181	74	8	2157	41	9	8	40	1.68
17135--22385	361	14.7	352	74	9	3127	41	9	8	40	1.68
18762--18798	18	2.1	18	90	5	58	54	5	5	35	1.47
17216--22260	181	28.2	176	72	11	1683	41	9	8	40	1.68
17468--22169	719	6.6	720	73	9	1975	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19459--20518	186	5.9	184	75	9	588	42	9	8	39	1.68
20514--22370	536	3.4	536	78	5	1521	41	9	7	40	1.67
22772--28252	181	30.6	179	73	9	2992	41	9	8	40	1.67
22772--28272	721	7.7	711	75	9	3497	41	9	8	40	1.67
22772--28272	540	10.2	540	75	8	3631	41	9	8	40	1.67
27885--28237	183	1.9	181	83	4	451	43	11	7	37	1.70
29569--32465	182	16.1	180	75	7	1911	41	9	7	41	1.66
29569--32353	719	3.9	706	76	8	2011	41	9	7	41	1.66
35330--35635	168	1.8	166	80	11	367	43	9	7	39	1.65
35726--36768	543	1.9	539	81	4	1233	42	10	8	39	1.68
35499--36845	543	2.5	537	77	8	1218	42	9	8	39	1.67
35485--37005	182	8.5	177	75	7	1122	42	9	7	40	1.67
43004--43038	16	2.2	16	89	0	52	34	14	8	42	1.76
46091--47629	181	8.5	181	76	7	1186	40	10	8	40	1.70
46173--47603	360	4.0	362	78	7	1121	40	10	8	40	1.70
46137--47624	541	2.8	538	79	6	1332	40	10	8	40	1.70
47771--47877	50	2.1	51	86	8	148	48	3	6	41	1.47
48040--48141	51	2.0	51	94	3	181	50	10	5	33	1.62
48133--48575	180	2.4	178	81	5	469	40	11	8	40	1.70
48458--48725	145	1.8	146	87	0	403	39	11	6	41	1.68
48745--48780	16	2.1	17	90	10	56	38	5	5	50	1.49
48791--48916	67	1.9	67	89	0	198	35	12	8	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48846--49977	181	6.3	180	76	6	814	41	9	7	41	1.66
48922--49958	361	2.9	361	81	4	1087	42	9	7	40	1.65
50355--50394	21	1.9	21	100	0	80	40	5	17	37	1.72
50377--50992	181	3.4	176	79	5	599	41	9	6	42	1.63
52967--53306	181	1.9	178	79	5	387	43	8	7	39	1.64
54093--55399	180	7.3	181	80	4	1173	41	9	7	41	1.66
54101--55428	181	7.4	178	78	7	1046	41	9	7	41	1.65
57761--58924	180	6.5	180	77	8	973	42	9	5	41	1.62
58823--58855	17	2.0	17	94	5	59	45	0	0	54	0.99
58818--58857	16	2.5	15	84	11	53	45	2	0	52	1.14
58908--58954	14	3.1	14	73	26	51	65	6	2	25	1.27
58913--58950	17	2.2	17	86	9	51	65	5	2	26	1.27
59055--60076	180	5.7	177	75	9	785	42	9	7	40	1.65
59980--60279	147	2.0	144	87	4	422	44	9	5	41	1.59
60126--60758	180	3.5	178	80	5	691	44	8	5	41	1.59
60808--60850	20	2.1	21	86	4	61	65	11	4	18	1.42
60832--61931	181	6.2	179	76	7	924	41	8	7	42	1.62
60842--61547	359	2.0	361	84	2	936	41	7	7	43	1.61
61567--61617	18	3.0	16	83	11	57	43	3	5	47	1.46
61461--61779	162	2.0	163	81	3	383	41	8	7	42	1.63
61830--62042	111	1.9	110	82	6	268	46	6	7	39	1.57
61967--62455	176	2.8	176	88	3	678	41	10	7	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61931--65019	181	17.2	179	77	6	2091	41	8	7	42	1.63
63468--63515	16	2.7	18	78	12	55	47	4	8	39	1.53
61942--65019	361	8.6	358	75	9	1786	41	8	7	42	1.63
62147--64683	540	4.7	535	74	8	1438	41	8	7	41	1.64
61942--64957	360	8.4	354	74	11	1447	42	8	7	41	1.63
64008--64040	16	2.0	17	88	5	50	48	3	9	39	1.50
65918--65960	23	1.9	23	86	13	63	46	6	6	39	1.58
65108--68029	181	16.3	181	74	7	1860	42	7	8	41	1.63
65152--68015	361	8.0	356	74	8	1760	42	7	8	41	1.64
65025--74066	358	24.9	357	69	12	2108	41	7	8	41	1.65
68201--70696	181	13.9	179	71	11	1176	40	8	9	41	1.67
70293--71066	427	1.8	424	78	4	887	40	8	8	42	1.67
69762--71670	965	2.0	966	82	4	2334	40	8	9	41	1.67
70717--74059	538	6.2	535	75	8	2316	41	7	9	41	1.65
70717--74059	181	18.7	180	75	8	2154	41	7	9	41	1.65
73734--73785	27	2.0	26	84	3	68	53	3	9	32	1.51
73544--74059	182	2.9	181	77	6	507	41	5	9	43	1.61
74447--74480	12	2.7	13	95	4	61	20	0	5	73	1.04
74507--74549	22	2.0	22	86	9	61	69	2	13	13	1.28
75156--75396	24	10.1	24	69	19	105	30	4	9	54	1.53
75219--75353	23	6.0	23	68	20	90	31	2	9	56	1.47
75225--75349	64	1.9	66	84	11	168	32	2	8	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75248--75396	47	3.2	46	86	5	194	32	2	8	57	1.42
75492--75551	20	3.0	20	85	7	68	28	8	11	51	1.67
75519--75574	20	2.8	20	81	5	60	33	8	12	44	1.73
87989--88029	8	5.1	8	96	0	73	26	24	9	39	1.86
90776--90811	17	2.2	16	95	5	63	80	5	5	8	1.01
91446--91497	23	2.2	24	83	10	63	61	7	21	9	1.51
92263--92545	43	6.9	41	76	13	255	31	15	15	37	1.89
93446--93510	32	2.0	33	81	3	78	38	9	6	46	1.61
93512--93565	24	2.2	25	86	3	74	37	5	3	53	1.42
93635--93739	24	4.5	22	70	18	63	29	3	11	55	1.53
93604--93751	46	3.2	46	84	3	165	31	4	10	54	1.52
93656--93751	24	4.1	24	72	16	85	31	3	8	57	1.44
93848--93957	18	5.8	19	73	15	84	40	4	4	50	1.43
93851--93957	55	1.9	57	86	5	155	39	4	4	51	1.44
95015--95058	21	2.0	21	86	4	61	43	0	0	56	0.99
95919--95957	19	2.1	19	100	0	78	25	10	38	25	1.87
97107--97145	17	2.3	17	90	0	60	46	2	0	51	1.14
98590--98628	20	2.0	20	89	0	60	38	15	17	28	1.91
104536--104576	21	2.0	20	90	4	64	9	17	2	70	1.25
106054--106120	33	2.0	35	91	5	111	62	1	0	35	1.04
106184--106220	18	2.2	16	90	9	56	56	8	5	29	1.51
106270--106294	13	1.9	13	100	0	50	88	4	0	8	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106271--106301	16	1.9	16	93	0	53	83	9	0	6	0.79
106365--106408	16	2.7	16	86	10	54	25	0	4	70	1.06
106365--106430	17	3.9	17	78	5	53	28	1	3	66	1.15
110243--110277	16	2.1	17	89	5	54	31	8	2	57	1.44
110240--110280	17	2.4	18	84	12	59	34	7	2	56	1.40
111947--112028	40	2.0	40	100	0	164	30	12	21	35	1.90
113086--113163	39	2.0	39	85	5	104	46	0	1	52	1.08
113121--113188	31	2.2	31	82	12	86	54	0	1	44	1.09
118419--118471	2	27.0	2	80	3	63	52	0	1	45	1.11
125619--125960	153	2.4	139	76	16	359	38	4	10	45	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117