genome.fa.s90.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  41  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9804472--9804525	10	5.4	10	84	8	65	29	1	3	64	1.21
9804471--9804525	21	2.7	20	86	8	76	29	1	3	65	1.20
9807558--9807586	12	2.3	13	94	5	51	58	0	0	41	0.98
9808149--9808198	25	2.0	24	84	3	64	46	2	0	52	1.12
9808794--9808834	21	2.0	21	85	9	57	56	2	4	36	1.34
9808882--9808959	40	2.0	40	86	0	111	48	5	6	39	1.51
9809049--9809189	74	1.9	74	82	5	178	47	5	7	39	1.54
9809210--9809252	17	2.5	17	85	14	54	39	4	6	48	1.51
9813323--9813362	16	2.5	17	84	11	50	57	2	2	37	1.26
9813395--9813434	21	1.9	21	84	0	53	50	2	7	40	1.44
9814551--9814612	29	2.1	29	93	0	106	37	0	6	56	1.25
9815122--9815229	29	3.7	28	77	14	103	40	1	4	52	1.33
9816432--9816485	18	3.1	18	79	17	60	44	0	1	53	1.11
9818590--9818633	22	2.0	22	86	4	63	52	20	9	18	1.72
9833893--9834385	248	2.0	248	95	0	887	28	8	21	41	1.83
9837612--9837644	17	1.9	17	93	0	57	57	3	0	39	1.14
9838039--9838071	9	3.9	9	88	11	52	42	0	0	57	0.98
9841068--9841114	21	2.3	20	79	13	51	38	4	10	46	1.58
9854582--9854616	16	2.2	16	89	0	52	31	11	11	45	1.76
9857731--9857766	3	12.0	3	100	0	72	66	0	0	33	0.92
9861718--9861750	3	11.0	3	100	0	66	66	0	0	33	0.92
9875053--9875097	22	2.1	21	83	4	54	44	8	15	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9878128--9878159	2	16.0	2	93	0	55	53	0	0	46	1.00
9887910--9888126	110	2.0	110	95	0	389	47	4	9	38	1.56
9888122--9888152	2	15.5	2	93	0	53	45	0	3	51	1.17
9888778--9888822	21	2.1	21	88	12	65	53	4	4	37	1.41
9888140--9890463	234	10.0	231	71	12	948	51	6	10	31	1.62
9890301--9890741	234	1.9	237	79	7	511	47	5	11	35	1.63
9890641--9890681	21	2.0	21	90	0	64	48	0	9	41	1.36
9893835--9894171	145	2.3	148	80	6	335	34	12	11	42	1.78
9895073--9895252	63	2.9	62	78	7	177	37	11	18	33	1.86
9895619--9895809	64	3.0	62	76	11	183	37	12	16	33	1.86
9895607--9895805	62	3.2	61	78	6	191	38	13	15	32	1.86
9897643--9897700	21	2.8	21	78	7	64	17	22	18	41	1.90
9899634--9900078	62	7.0	62	68	14	244	39	11	11	37	1.77
9899633--9900149	125	4.1	125	77	12	489	39	11	12	36	1.79
9899830--9900077	133	1.9	133	84	6	342	38	11	12	37	1.80
9905200--9905236	13	2.8	13	87	0	56	24	8	5	62	1.44
9906390--9907164	161	4.8	160	80	6	723	33	10	14	41	1.80
9906426--9907164	321	2.3	319	82	6	895	33	9	15	41	1.80
9915190--9915226	10	3.6	11	86	13	53	86	0	5	8	0.70
9915191--9915228	17	2.3	17	81	4	51	86	0	5	7	0.69
9916914--9917060	80	1.8	79	88	1	222	39	15	14	30	1.87
9918191--9918395	76	2.8	72	77	9	200	17	15	15	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9917770--9918786	36	28.4	36	66	9	217	17	16	14	51	1.77
9918480--9918786	107	2.9	107	75	5	262	18	17	13	51	1.77
9918349--9918745	143	2.8	141	76	10	342	17	18	13	50	1.77
9919024--9919102	22	3.5	22	70	16	63	77	15	1	6	1.03
9919022--9919102	8	9.6	8	74	10	54	77	14	1	6	1.02
9919576--9919911	145	2.3	145	80	6	358	34	15	11	38	1.83
9925437--9925465	2	14.5	2	100	0	58	48	0	0	51	1.00
9933367--9933444	41	1.9	41	83	0	102	16	12	28	42	1.85
9942703--9942764	11	5.5	11	79	7	61	43	0	3	53	1.17
9942709--9942762	24	2.3	23	84	6	65	46	0	3	50	1.19
9943222--9943263	22	1.9	22	85	9	59	66	0	0	33	0.92
9946442--9946470	14	2.0	15	93	6	51	72	0	20	6	1.07
9955440--9955483	22	2.0	22	86	4	61	43	13	2	40	1.57
9956251--9956297	23	2.0	23	83	0	58	34	0	2	63	1.06
9959920--9960000	40	2.0	40	86	9	112	56	13	3	25	1.54
9960235--9960296	22	2.8	23	75	7	65	67	6	8	17	1.37
9964695--9964988	159	1.9	158	89	2	455	34	18	15	31	1.93
9966585--9966648	32	2.0	32	100	0	128	50	6	15	28	1.68
9972469--9972504	17	2.2	17	90	5	56	55	11	16	16	1.68
9974472--9974499	2	14.0	2	100	0	56	0	50	0	50	1.00
9986167--9986221	19	2.9	19	75	5	58	20	3	30	45	1.68
9988505--9988551	10	4.7	10	82	10	60	34	12	10	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9988925--9989120	47	4.2	46	72	11	139	38	17	11	31	1.86
9989341--9989625	84	3.4	84	80	2	304	39	14	15	30	1.87
9989854--9989969	36	3.2	36	80	2	133	25	15	20	37	1.92
9989865--9989960	37	2.6	36	81	3	129	25	15	19	39	1.91
9992482--9992526	14	3.2	14	75	12	56	13	0	42	44	1.43
9992577--9992723	50	2.7	51	76	18	161	46	14	12	25	1.81
9992612--9992724	61	1.9	59	85	3	154	45	15	15	24	1.84
9993721--9994049	143	2.3	141	80	7	342	37	13	15	33	1.87
9994978--9995036	24	2.5	24	83	5	66	38	28	16	15	1.89
9995415--9995527	43	2.6	44	81	2	122	39	18	9	31	1.83
9998213--9998250	7	5.6	7	90	3	60	10	2	0	86	0.66
9998323--9998466	76	1.9	74	90	5	229	46	7	21	24	1.77
10001404--10001594	37	5.1	38	80	4	104	35	8	20	35	1.83
10001425--10001594	37	4.5	38	81	5	159	34	9	20	35	1.85
10003437--10003492	20	2.8	20	73	18	53	58	1	8	30	1.39
10003486--10003550	32	2.0	32	93	0	112	50	9	18	21	1.74
10003575--10003779	7	30.7	7	69	14	69	15	2	33	48	1.60
10003715--10003838	28	4.4	28	76	9	99	13	0	37	48	1.49
10003708--10003787	21	3.9	20	82	9	90	11	0	37	51	1.38
10005991--10006027	10	3.7	10	92	0	56	21	8	24	45	1.78
10010217--10010300	36	2.3	37	77	2	89	33	9	25	32	1.88
10015164--10015240	22	3.6	21	72	16	68	3	19	1	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10015169--10015219	25	2.0	25	85	14	70	3	19	1	74	1.07
10015390--10015466	39	2.0	40	85	12	106	5	16	2	75	1.10
10015416--10015490	15	5.1	14	69	16	53	6	17	0	76	1.00
10015416--10015482	21	3.3	21	73	17	61	5	16	0	77	0.95
10015604--10015675	11	5.8	11	77	15	54	1	19	1	77	0.91
10021196--10021263	18	3.8	18	80	3	84	32	7	23	36	1.83
10021127--10021226	51	2.0	51	86	7	141	32	5	27	36	1.78
10021198--10021289	36	2.6	36	84	6	116	33	7	22	35	1.83
10023357--10023466	3	38.7	3	72	17	74	35	2	3	58	1.30
10023366--10023464	45	2.2	44	80	12	103	34	3	4	58	1.32
10035288--10035340	21	2.6	20	72	21	56	24	7	15	52	1.68
10035324--10035393	20	3.6	20	71	19	58	25	5	17	51	1.67
10051594--10051636	21	2.0	21	95	0	77	53	16	4	25	1.62
10057615--10057661	6	7.7	6	80	4	58	17	0	42	40	1.49
10057616--10057667	12	4.2	12	76	11	52	19	0	38	42	1.51
10063964--10064066	12	8.8	12	67	16	56	15	0	38	44	1.53
10063896--10064002	19	5.5	19	72	9	83	13	3	36	46	1.60
10063989--10064042	24	2.2	24	90	0	81	22	0	33	44	1.53
10066860--10066902	14	3.0	14	79	3	50	6	16	0	76	0.99
10072597--10072945	193	1.8	193	88	1	538	35	18	17	28	1.93
10075740--10075783	18	2.4	18	80	3	52	25	2	29	43	1.67
10075688--10075808	19	6.6	19	67	14	74	18	4	35	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10076512--10076562	20	2.6	19	81	9	66	43	1	11	43	1.52
10083551--10083579	2	14.5	2	100	0	58	48	0	0	51	1.00
10085045--10085324	153	1.8	153	89	1	445	44	16	8	30	1.78
10087992--10088034	22	1.9	23	90	4	70	58	9	4	27	1.49
10088015--10088099	16	5.2	16	73	18	68	52	14	7	25	1.66
10088016--10088169	50	3.3	47	83	11	185	53	12	7	26	1.65
10088038--10088187	42	3.3	42	84	7	165	52	12	8	27	1.67
10089624--10089662	17	2.3	18	91	8	64	56	25	5	12	1.57
10089696--10089733	18	2.1	19	85	5	51	10	10	2	76	1.12
10089764--10089803	12	3.2	12	86	6	53	60	10	0	30	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117