genome.fa.s90.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  64  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14001027--14001105	21	3.9	21	77	8	74	79	7	2	10	1.01
14001978--14002006	15	1.9	15	100	0	58	48	13	10	27	1.75
14002089--14002127	7	5.4	7	81	6	51	82	5	0	12	0.83
14002384--14002665	43	6.5	43	74	8	189	37	13	12	36	1.82
14002558--14002665	44	2.5	44	83	6	130	38	11	12	37	1.78
14002648--14002768	52	2.3	51	84	5	145	43	14	9	32	1.77
14003902--14003938	15	2.4	15	90	4	56	16	10	0	72	1.10
14006739--14006784	24	1.9	24	95	0	83	30	19	17	32	1.95
14007040--14007102	27	2.3	27	91	0	99	46	9	7	36	1.66
14012039--14012077	18	2.1	19	85	9	53	10	0	20	69	1.17
14013806--14013885	19	4.3	18	77	13	65	38	42	0	18	1.51
14013856--14013965	44	2.5	43	81	8	123	41	37	1	19	1.62
14013873--14013954	19	3.5	25	76	20	72	42	36	2	18	1.63
14013991--14014040	19	2.8	17	76	11	55	40	36	4	20	1.71
14015572--14015605	18	1.9	18	94	5	61	82	11	0	5	0.83
14015830--14015908	37	2.1	37	92	0	131	37	22	10	29	1.87
14015851--14015985	72	1.9	73	81	4	166	37	20	8	32	1.84
14019462--14019505	20	2.2	20	87	0	61	79	2	15	2	0.93
14019952--14019988	17	2.1	18	90	5	58	40	5	10	43	1.63
14023143--14023297	61	2.5	62	80	2	177	32	14	24	27	1.95
14023782--14023878	33	3.1	33	63	19	82	48	4	11	36	1.58
14023783--14023982	60	3.4	59	84	6	262	43	3	13	40	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14023783--14023982	59	3.4	59	86	5	269	43	3	13	40	1.61
14025044--14025199	62	2.5	62	88	0	222	33	14	24	27	1.94
14025690--14025896	58	3.5	58	79	7	238	42	5	12	39	1.67
14032078--14032153	21	3.7	19	70	26	57	61	0	2	35	1.10
14032082--14032146	22	2.9	23	77	18	66	61	0	3	35	1.12
14032089--14032179	35	2.5	36	79	17	98	60	0	2	37	1.09
14032225--14032264	18	2.2	18	86	0	53	57	0	0	42	0.98
14033081--14033177	48	2.1	45	90	7	151	20	4	14	60	1.50
14033334--14033360	7	3.9	7	100	0	54	44	0	0	55	0.99
14038124--14038193	6	11.8	6	79	8	63	24	1	7	67	1.24
14038134--14038193	24	2.5	24	86	0	75	25	1	6	66	1.25
14038367--14038403	19	1.9	19	94	0	65	27	8	29	35	1.85
14038883--14038985	26	4.0	25	69	19	77	30	3	8	57	1.47
14038898--14038962	20	3.2	21	75	14	73	30	3	7	58	1.42
14038905--14039006	53	1.9	53	95	0	186	30	3	8	56	1.48
14038893--14038983	41	2.2	41	82	7	114	30	3	7	58	1.42
14038959--14039013	21	2.6	22	86	8	71	32	5	7	54	1.51
14038948--14039013	20	3.2	20	79	12	71	31	4	9	54	1.52
14038902--14039036	53	2.5	53	84	4	148	32	5	8	53	1.55
14039153--14039208	24	2.3	23	85	8	76	33	3	8	53	1.49
14039322--14039395	18	4.1	18	75	15	62	32	2	13	51	1.55
14039353--14039394	16	2.5	17	84	11	59	35	4	9	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14039330--14039438	18	6.0	18	73	16	91	33	3	12	50	1.58
14044021--14044050	10	2.9	10	95	5	51	90	0	10	0	0.47
14044021--14044053	15	2.3	15	94	5	59	90	0	9	0	0.44
14045265--14045338	22	3.4	21	75	14	69	29	16	21	32	1.95
14045147--14045355	88	2.4	87	76	6	210	31	19	18	31	1.95
14045147--14045355	44	4.8	44	70	9	151	31	19	18	31	1.95
14045741--14045814	37	2.0	37	94	0	130	25	9	22	41	1.84
14046034--14046085	12	4.4	12	75	2	52	25	9	1	63	1.35
14046034--14046085	24	2.2	24	86	3	70	25	9	1	63	1.35
14046699--14046777	20	4.0	20	89	0	104	26	10	13	49	1.74
14046828--14046906	21	3.8	20	74	14	70	32	7	8	50	1.62
14047013--14047073	24	2.6	23	87	7	86	31	3	11	54	1.52
14046994--14047071	24	3.5	23	77	19	85	32	3	11	52	1.55
14046994--14047072	19	3.6	21	74	19	72	31	3	11	53	1.55
14047140--14047224	36	2.4	36	82	3	102	28	5	15	50	1.67
14047196--14047226	16	1.9	16	93	0	53	32	6	19	41	1.77
14047582--14047621	21	1.9	21	84	0	53	32	35	30	2	1.71
14061552--14061586	16	2.1	17	89	5	54	45	0	0	54	0.99
14068481--14068529	19	2.6	18	84	9	62	85	2	10	2	0.76
14068483--14068529	18	2.6	17	83	12	58	87	2	8	2	0.71
14069656--14069888	45	5.2	45	75	7	206	37	9	12	40	1.75
14069662--14069738	22	3.4	22	71	7	64	38	6	15	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14069755--14069818	24	2.8	22	77	9	56	34	10	12	42	1.78
14069788--14069829	22	2.0	22	90	4	68	30	7	9	52	1.61
14069664--14069888	91	2.5	90	79	7	226	37	8	13	40	1.76
14069768--14069886	21	5.3	23	67	10	66	36	10	10	42	1.74
14070095--14070156	17	3.7	16	79	16	72	33	8	12	45	1.72
14070107--14070173	34	2.0	34	87	0	98	32	13	13	40	1.83
14070095--14070266	51	3.4	51	76	3	139	33	15	15	36	1.88
14070155--14070253	17	5.8	17	77	9	85	33	20	15	31	1.93
14070155--14070253	34	2.9	34	73	11	94	33	20	15	31	1.93
14070223--14070292	34	2.1	34	81	5	79	32	15	17	34	1.91
14070133--14070322	85	2.2	85	81	1	202	32	16	16	34	1.92
14070416--14070451	18	2.0	18	88	0	54	30	11	16	41	1.83
14070435--14070550	35	3.4	34	85	2	133	32	17	17	32	1.93
14070454--14070549	34	2.8	36	85	4	108	33	17	15	33	1.92
14072122--14072185	24	2.7	23	83	13	76	17	0	3	79	0.85
14072122--14072200	6	12.3	6	77	22	65	20	0	2	77	0.89
14076302--14076326	11	2.3	11	100	0	50	8	48	16	28	1.74
14082533--14082831	150	2.0	150	98	1	582	29	28	4	38	1.75
14087964--14087998	15	2.4	15	90	4	54	42	0	0	57	0.99
14093884--14093926	20	2.2	20	95	0	77	44	9	32	13	1.76
14097125--14097163	19	2.0	20	85	14	55	35	2	7	53	1.43
14098403--14098837	219	2.0	219	84	8	573	33	10	5	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14098916--14098999	40	2.2	40	83	12	104	35	3	4	55	1.38
14100617--14100642	13	2.0	13	100	0	52	30	0	38	30	1.58
14102049--14102587	271	2.0	271	95	0	979	33	12	14	39	1.84
14105406--14105455	21	2.4	20	83	6	55	38	4	2	56	1.30
14105663--14105739	21	3.8	21	76	10	70	36	2	2	58	1.26
14106083--14106125	20	2.3	19	80	11	52	20	2	4	72	1.14
14112232--14112283	27	1.9	27	96	0	95	53	9	7	28	1.61
14112378--14112410	14	2.4	14	90	10	50	39	0	0	60	0.97
14112999--14113055	4	15.0	4	72	17	50	29	0	0	70	0.88
14112997--14113059	12	5.4	12	77	14	62	33	0	0	66	0.92
14113000--14113046	21	2.2	21	85	7	60	29	0	0	70	0.88
14113499--14113564	25	2.8	23	80	15	73	45	4	4	45	1.44
14114142--14114239	49	1.9	51	84	10	130	27	6	4	62	1.37
14121235--14121263	2	14.5	2	100	0	58	51	0	0	48	1.00
14124454--14124501	12	4.0	12	83	0	69	41	2	8	47	1.45
14124449--14124498	6	8.3	6	79	0	55	42	4	6	48	1.46
14124449--14124498	4	12.5	4	82	0	55	42	4	6	48	1.46
14124574--14124628	26	2.4	22	76	23	67	40	0	0	60	0.97
14125087--14125131	19	2.4	18	82	17	56	55	0	4	40	1.20
14125662--14125707	20	2.3	20	82	17	60	56	4	4	34	1.39
14127234--14127268	18	2.0	18	88	5	54	8	0	11	80	0.92
14127689--14127741	26	2.1	24	82	6	61	43	9	11	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14128975--14129026	23	2.3	23	86	6	70	23	21	5	50	1.70
14130979--14131022	23	1.9	23	95	0	79	31	4	11	52	1.57
14131893--14131994	11	9.5	10	79	15	89	81	0	13	4	0.85
14131897--14131975	7	10.9	7	77	11	63	83	0	12	3	0.77
14131893--14131976	25	3.4	24	79	14	82	83	0	13	3	0.77
14131920--14131976	1	57.0	1	75	0	51	87	0	8	3	0.64
14131894--14131976	17	5.0	17	77	13	77	84	0	12	3	0.75
14131903--14131971	35	1.9	35	88	5	102	82	0	13	4	0.81
14131905--14131976	17	4.1	17	83	3	81	84	0	11	4	0.75
14132598--14132731	63	2.1	63	84	2	171	29	8	28	33	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117