genome.fa.s90.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  113  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20284006--20284036	12	2.6	12	100	0	62	12	29	19	38	1.89
20284681--20284730	26	1.9	26	95	0	91	22	26	20	32	1.98
20285576--20285628	26	2.0	26	92	0	88	26	22	20	30	1.98
20282013--20286867	898	5.4	897	86	3	6369	25	24	24	25	2.00
20286474--20286526	26	2.0	26	89	7	81	30	24	16	28	1.97
20287282--20287334	26	2.0	26	96	0	97	26	24	20	28	1.99
20288184--20288234	26	2.0	26	92	0	84	27	25	17	29	1.98
20286860--20291747	898	5.5	895	85	4	6232	26	25	23	25	2.00
20291899--20291949	26	2.0	26	92	0	84	25	27	15	31	1.96
20292793--20292845	26	2.0	26	96	0	97	28	26	18	26	1.98
20291840--20296388	903	5.1	895	85	4	5529	25	25	24	25	2.00
20294595--20294650	26	2.2	26	93	0	94	28	21	19	30	1.98
20297712--20297764	26	2.0	26	96	0	97	26	24	20	28	1.99
20299266--20299317	26	2.0	26	96	0	95	26	25	21	26	1.99
20300161--20300213	26	2.0	26	96	0	97	28	26	18	26	1.98
20301064--20301113	26	1.9	26	100	0	100	26	30	16	28	1.96
20301966--20302018	26	2.0	26	88	0	79	26	20	20	32	1.98
20302870--20302922	26	2.0	26	100	0	106	26	22	20	30	1.98
20303337--20303389	26	2.0	26	92	0	88	32	24	15	28	1.95
20304232--20304284	26	2.0	26	92	0	88	28	24	18	28	1.98
20305130--20305185	26	2.2	26	90	6	87	30	21	17	30	1.96
20302935--20307555	904	5.1	898	88	2	6289	26	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20306035--20306087	26	2.0	26	85	7	72	26	22	18	32	1.97
20306939--20306991	26	2.0	26	88	0	79	28	24	20	26	1.99
20307671--20307723	26	2.0	26	96	0	97	28	26	18	26	1.98
20306856--20308280	720	2.0	726	87	2	2099	25	23	24	26	2.00
20310356--20310408	26	2.0	26	92	0	88	28	24	18	28	1.98
20307575--20312808	896	5.8	898	88	2	7341	25	24	23	25	2.00
20311253--20311305	26	2.0	26	96	0	97	28	26	18	26	1.98
20313829--20313881	26	2.0	26	82	7	63	32	20	18	28	1.97
20314747--20314802	26	2.2	26	90	0	85	35	23	14	26	1.93
20316348--20316706	159	2.3	159	86	1	479	19	28	29	22	1.98
20316698--20316768	26	2.7	26	93	0	97	32	23	14	29	1.94
20317615--20317667	26	2.0	26	96	0	97	26	24	20	28	1.99
20318325--20318578	133	1.9	133	85	3	350	22	27	29	20	1.99
20318639--20318717	26	3.0	25	88	3	113	26	21	22	29	1.99
20319449--20319531	26	3.3	24	85	9	105	28	20	21	28	1.98
20318474--20320088	808	2.0	808	94	0	2827	26	22	25	25	2.00
20321276--20321326	26	2.0	26	92	0	84	25	25	19	29	1.99
20319475--20325546	900	6.8	898	85	3	7736	25	24	24	25	2.00
20322164--20322216	26	2.0	26	92	0	88	28	24	18	28	1.98
20323955--20324007	26	2.0	26	96	0	97	26	24	20	28	1.99
20325013--20327015	722	2.8	710	85	3	2722	28	24	21	25	1.99
20327195--20327273	26	3.0	26	88	0	122	25	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20328114--20328166	26	2.0	26	88	0	79	30	22	20	26	1.98
20326342--20330045	890	4.1	887	85	4	4720	25	24	23	25	2.00
20329908--20329960	26	2.0	26	88	0	79	33	22	15	28	1.94
20330637--20330688	26	2.0	26	92	0	86	30	26	15	26	1.96
20329387--20331579	729	3.0	727	88	2	3058	26	24	24	24	2.00
20331166--20331191	4	6.5	4	100	0	52	0	73	26	0	0.84
20331372--20331424	26	2.0	26	85	0	70	24	20	18	35	1.95
20332609--20334378	734	2.5	719	84	7	2299	28	23	22	25	1.99
20334578--20334630	26	2.0	26	88	0	79	28	22	20	28	1.99
20336343--20336395	26	2.0	26	96	0	97	28	26	18	26	1.98
20337250--20337299	26	1.9	26	95	0	91	32	26	14	28	1.94
20338149--20338204	26	2.2	26	93	0	94	30	23	19	26	1.98
20338228--20338481	136	1.9	136	89	3	395	18	25	33	22	1.97
20339881--20339910	4	7.5	4	92	0	51	0	70	26	3	1.03
20339880--20339910	16	1.9	16	100	0	62	0	67	25	6	1.14
20340091--20340143	26	2.0	26	92	0	88	26	22	18	32	1.97
20338344--20341163	903	3.2	881	86	4	3591	25	25	24	24	2.00
20340972--20341022	25	2.0	25	88	7	77	29	23	19	27	1.98
20342312--20342363	26	2.0	26	96	0	95	26	17	26	28	1.97
20343043--20343095	26	2.0	26	96	0	97	26	18	26	28	1.98
20343928--20343984	26	2.2	26	93	0	96	28	17	24	29	1.97
20347296--20347348	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20349078--20349130	26	2.0	26	89	7	81	28	20	22	28	1.99
20350872--20350921	26	1.9	26	88	8	75	30	16	28	26	1.96
20351772--20351824	26	2.0	26	88	0	79	28	16	24	30	1.97
20352672--20352722	26	2.0	26	88	0	75	29	17	25	27	1.98
20346434--20354523	899	9.0	896	84	3	10056	25	24	24	25	2.00
20354003--20354060	26	2.3	25	82	5	73	22	8	18	50	1.74
20354473--20354549	26	3.0	26	98	0	145	29	22	20	27	1.98
20355271--20355349	26	3.0	26	86	0	113	27	22	22	26	1.99
20355323--20355691	159	2.3	160	84	3	451	22	28	28	19	1.98
20356345--20356397	26	2.0	26	92	0	88	30	20	22	26	1.98
20357432--20357510	26	3.0	26	92	0	122	27	17	24	30	1.97
20357494--20357852	159	2.3	159	87	0	486	23	30	27	18	1.98
20358520--20358572	26	2.0	26	92	0	88	28	18	24	28	1.98
20357643--20361251	898	4.0	903	85	2	4715	24	23	25	26	2.00
20359427--20359482	26	2.2	26	96	0	103	26	14	25	33	1.94
20357643--20361251	899	4.0	897	85	2	4743	24	23	25	26	2.00
20366202--20366252	26	2.0	26	96	0	93	27	17	27	27	1.98
20367092--20367144	26	2.0	26	100	0	106	26	20	26	26	1.99
20369781--20369833	26	2.0	26	100	0	106	26	20	26	26	1.99
20365322--20373812	900	9.5	898	85	4	10635	25	23	24	25	2.00
20372436--20372486	26	2.0	26	92	0	84	29	13	25	31	1.94
20373338--20373390	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20374145--20374197	26	2.0	26	89	7	81	28	16	24	30	1.97
20375045--20375097	26	2.0	26	92	0	88	28	18	24	28	1.98
20375931--20375983	26	2.0	26	85	7	72	28	15	26	30	1.96
20376838--20376890	26	2.0	26	92	0	88	26	20	24	28	1.99
20373806--20383231	903	10.5	900	85	3	11964	25	24	24	25	2.00
20379496--20379548	26	2.0	26	85	0	70	28	18	24	28	1.98
20380395--20380447	26	2.0	26	100	0	106	26	20	26	26	1.99
20381285--20381337	26	2.0	26	92	0	88	26	16	26	30	1.97
20383091--20383143	26	2.0	26	92	0	88	30	20	22	26	1.98
20384263--20384315	26	2.0	26	88	0	79	28	22	22	26	1.99
20385132--20385184	26	2.0	26	100	0	106	26	20	26	26	1.99
20386017--20386069	26	2.0	26	88	0	79	28	20	22	28	1.99
20386202--20386254	26	2.0	26	92	0	88	28	22	22	26	1.99
20385993--20386413	185	2.3	185	85	0	574	22	27	26	23	1.99
20387095--20387147	26	2.0	26	100	0	106	26	20	26	26	1.99
20387987--20388039	26	2.0	26	92	0	88	28	18	24	28	1.98
20386199--20388150	892	2.2	884	86	4	2694	23	24	25	25	2.00
20393080--20393132	26	2.0	26	96	0	97	24	20	28	26	1.99
20393978--20394030	26	2.0	26	92	0	88	24	18	26	30	1.98
20391476--20395385	907	4.4	892	84	4	4822	25	23	24	25	2.00
20394880--20394932	26	2.0	26	96	0	97	24	20	28	26	1.99
20396443--20396495	27	2.0	27	92	3	90	30	15	24	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20398259--20398311	27	2.0	27	92	3	90	30	15	24	30	1.95
20395649--20399134	914	3.8	907	88	2	5237	25	23	24	25	2.00
20399892--20399944	26	2.0	26	89	7	81	28	18	22	30	1.98
20399918--20400271	159	2.2	159	86	0	483	24	30	27	18	1.98
20400514--20400564	26	2.0	26	88	0	75	29	7	27	35	1.85
20401405--20401457	26	2.0	26	96	0	97	26	16	24	32	1.97
20402160--20402212	26	2.0	26	100	0	106	26	20	26	26	1.99
20402519--20402571	26	2.0	26	96	0	97	26	18	26	28	1.98
20401977--20402678	359	2.0	347	84	3	909	24	32	25	17	1.97
20404123--20404175	26	2.0	26	88	0	79	20	20	32	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117