genome.fa.s90.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  71  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15132616--15132764	62	2.4	63	83	7	173	40	12	16	30	1.86
15132659--15132790	62	2.1	62	80	5	151	37	16	15	31	1.90
15134994--15135142	52	2.9	52	79	9	153	38	7	13	40	1.72
15135010--15135120	51	2.2	51	83	8	136	38	8	14	38	1.76
15135630--15135691	26	2.3	26	75	13	63	20	4	1	72	1.12
15139426--15139460	10	3.6	10	88	3	54	91	0	8	0	0.42
15139426--15139460	15	2.4	14	90	9	61	91	0	8	0	0.42
15139763--15139809	14	3.3	14	88	8	60	87	4	0	8	0.67
15139763--15139808	20	2.2	21	92	3	76	86	4	0	8	0.68
15139793--15139850	21	2.9	19	78	16	55	77	3	13	5	1.07
15139798--15139852	24	2.3	24	81	6	67	76	1	16	5	1.06
15140666--15141032	115	3.2	114	75	4	344	23	27	13	35	1.92
15141387--15141624	85	2.8	86	80	3	284	34	17	11	36	1.86
15141378--15141681	86	3.5	85	76	2	286	33	19	11	36	1.87
15142092--15142241	52	2.9	51	83	4	176	38	8	16	37	1.79
15146660--15146786	68	1.9	68	88	3	193	34	6	14	44	1.71
15147312--15147348	15	2.5	15	90	0	56	21	8	8	62	1.49
15147625--15147793	55	3.1	54	73	5	151	47	14	13	25	1.80
15155634--15155696	33	2.0	31	90	6	99	47	3	0	49	1.17
15157021--15157060	7	5.6	7	88	5	62	12	2	2	82	0.87
15157021--15157060	15	2.8	14	92	3	62	12	2	2	82	0.87
15165232--15165540	101	3.1	100	81	3	343	29	16	17	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15168894--15169054	61	2.6	61	77	5	175	39	13	14	31	1.86
15169087--15169204	61	1.9	59	80	8	130	44	7	19	28	1.78
15170150--15170215	34	2.0	34	84	3	89	27	21	12	39	1.88
15171020--15171090	34	2.1	34	89	0	106	32	18	8	40	1.80
15179716--15179809	47	2.0	45	89	4	143	51	9	14	24	1.73
15186500--15186583	28	3.1	28	80	14	79	76	0	13	10	1.03
15186497--15186576	8	9.1	8	72	18	54	75	0	12	12	1.06
15187989--15188281	44	6.9	42	75	12	152	25	12	18	44	1.84
15187968--15188276	45	7.2	42	75	14	195	24	12	18	45	1.83
15187960--15188181	39	5.4	39	77	11	167	24	11	20	43	1.85
15188024--15188184	39	4.0	39	82	4	178	24	11	20	43	1.84
15188018--15188181	79	2.0	81	81	8	192	23	12	20	43	1.85
15188165--15188306	44	3.2	43	82	8	169	28	11	16	42	1.84
15189784--15189870	44	2.0	45	90	2	140	55	9	10	25	1.63
15195298--15195369	18	3.8	19	80	14	71	12	1	37	48	1.50
15206499--15206559	21	3.2	18	81	11	59	50	34	0	14	1.43
15206523--15206735	7	31.4	7	70	14	135	43	38	0	16	1.55
15206523--15206723	13	15.4	13	71	10	106	42	40	0	15	1.54
15206533--15206641	47	2.2	49	88	4	168	41	42	1	14	1.56
15206523--15206735	20	10.5	21	72	14	135	43	38	0	16	1.55
15206666--15206721	27	2.0	28	89	3	87	44	35	0	19	1.51
15207919--15207998	25	3.2	25	92	0	124	27	12	8	51	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15211720--15211777	28	2.1	28	96	3	109	34	15	20	29	1.94
15218307--15218405	49	2.0	49	96	0	180	25	17	16	41	1.89
15222834--15222876	14	3.2	13	81	12	52	79	0	18	2	0.85
15224310--15224384	30	2.5	31	77	2	89	38	14	24	22	1.92
15224541--15224845	48	6.2	49	74	10	210	26	15	13	44	1.83
15224540--15224728	100	1.9	101	84	3	256	25	14	15	44	1.85
15224541--15224863	147	2.2	150	80	3	377	26	15	14	44	1.84
15227449--15227601	7	23.0	7	73	14	119	44	35	1	18	1.58
15227449--15227597	20	7.5	20	73	17	116	44	36	1	18	1.58
15227479--15227563	27	2.9	28	81	16	93	43	36	1	18	1.58
15227449--15227601	13	12.0	13	70	14	88	44	35	1	18	1.58
15227419--15227616	13	15.2	12	68	18	60	43	36	2	17	1.62
15236843--15237902	481	2.2	480	78	7	1060	25	26	19	28	1.99
15253308--15254063	414	1.8	415	79	3	876	26	25	18	29	1.98
15263924--15264054	45	2.9	44	78	6	138	25	28	19	25	1.99
15284003--15284050	21	2.3	21	85	0	60	35	12	35	16	1.87
15299484--15299595	45	2.5	45	82	0	125	28	33	14	24	1.94
15299524--15299626	45	2.3	45	79	3	109	25	30	16	28	1.97
15301737--15301776	18	2.2	18	90	0	62	15	25	20	40	1.90
15310571--15310633	10	6.3	10	96	0	117	30	42	9	17	1.81
15327689--15327810	61	2.0	61	95	0	217	36	9	25	27	1.88
15332143--15332197	28	2.0	28	85	0	74	41	21	20	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15339832--15339876	21	2.1	21	91	0	72	26	33	11	28	1.91
15362267--15362298	16	2.0	16	100	0	64	37	18	31	12	1.88
15386317--15386356	17	2.4	17	95	0	71	15	17	27	40	1.89
15395731--15395786	24	2.3	24	81	0	67	26	26	21	25	1.99
15396716--15396755	14	2.9	14	96	0	71	32	7	27	32	1.85
15409910--15409952	21	2.0	21	86	0	59	16	27	37	18	1.92
15416017--15416140	45	2.8	45	82	0	149	19	26	22	31	1.98
15419741--15419832	45	2.0	45	81	8	107	31	19	21	27	1.97
15420519--15420553	17	1.9	19	88	11	56	74	0	5	20	1.02
15425818--15425855	20	2.0	20	85	10	53	26	7	31	34	1.85
15433417--15435822	181	13.4	180	75	6	1765	41	9	8	40	1.68
15433430--15435822	360	6.7	357	75	8	1645	41	9	8	40	1.68
15433422--15435822	540	4.5	538	79	7	1997	41	9	8	40	1.69
15433533--15435821	716	3.2	714	78	7	1765	41	9	8	40	1.68
15436078--15441690	181	31.5	180	73	9	3040	42	9	7	40	1.66
15437854--15438165	167	1.9	166	81	4	378	42	8	7	42	1.61
15436078--15441690	902	6.3	898	73	9	3283	42	9	7	40	1.66
15439901--15440710	176	4.6	174	72	11	462	43	8	6	41	1.60
15440170--15440848	357	1.9	354	79	7	773	42	8	6	42	1.61
15440886--15441691	352	2.3	346	80	7	858	40	8	8	42	1.66
15439272--15441690	180	13.7	173	70	13	881	41	8	8	41	1.65
15441674--15441744	35	2.0	36	82	15	87	53	9	7	29	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15441690--15442451	180	4.2	178	78	5	703	41	8	10	39	1.69
15442431--15442466	16	2.2	16	90	0	54	55	2	2	38	1.29
15442309--15442601	148	2.0	148	81	4	349	43	6	7	42	1.57
15442470--15445582	181	17.4	176	74	10	2054	40	8	9	41	1.68
15442470--15445606	358	8.8	351	75	9	2188	40	8	9	41	1.68
15443490--15445606	180	11.8	181	76	6	1691	40	8	9	41	1.68
15442488--15445575	899	3.4	883	75	8	2608	40	8	9	41	1.68
15446100--15446256	52	3.0	52	83	1	199	25	24	9	40	1.85
15446281--15446322	11	3.8	11	93	0	75	52	30	0	16	1.44
15446451--15446767	172	1.8	175	78	6	365	42	8	10	39	1.68
15447414--15447767	176	2.0	178	82	7	434	40	7	9	41	1.67
15448390--15449452	178	6.0	179	76	7	514	42	9	7	40	1.67
15448908--15448944	18	2.0	19	89	5	58	56	0	2	40	1.13
15448068--15449585	180	8.5	180	75	8	1031	41	10	7	40	1.68
15452072--15452106	16	2.2	16	89	0	52	45	11	11	31	1.76
15455230--15455947	180	4.0	180	78	6	708	40	8	10	40	1.70
15455863--15455910	16	2.7	18	81	12	55	43	6	12	37	1.68
15455961--15456656	181	3.8	179	78	5	582	40	8	9	41	1.67
15456714--15456746	18	1.9	17	88	11	50	39	6	6	48	1.53
15456785--15457658	180	4.8	180	78	5	798	42	9	8	40	1.67
15456802--15457681	361	2.4	359	78	6	875	42	9	7	40	1.66
15459283--15460200	181	5.1	182	79	6	888	43	10	8	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15459283--15460172	360	2.5	358	81	4	983	42	9	8	38	1.68
15460132--15460256	65	1.9	65	91	3	207	32	14	8	44	1.76
15461205--15466613	181	29.8	180	74	9	3188	41	10	8	39	1.70
15462005--15462054	18	2.8	18	70	14	50	40	6	8	46	1.58
15461282--15463773	901	2.8	901	90	2	3711	41	9	8	39	1.69
15461205--15471540	721	14.4	709	72	11	2339	41	9	8	39	1.69
15465336--15466613	179	7.1	180	77	7	1050	41	9	9	39	1.70
15466624--15468640	179	11.3	180	79	5	1513	42	8	8	40	1.66
15468648--15471590	180	16.4	180	74	8	1840	41	10	8	40	1.69
15468727--15471224	358	6.9	360	74	8	848	41	10	8	40	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117