genome.fa.s90.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  17  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5047139--5047187	21	2.3	21	83	10	64	53	2	8	36	1.43
5047234--5047275	14	3.0	14	83	10	50	71	2	4	21	1.16
5047430--5047511	21	3.9	22	72	15	66	50	2	3	43	1.33
5047472--5047524	24	2.1	24	82	10	61	50	1	1	45	1.23
5051120--5051168	18	2.8	18	78	12	57	71	2	2	24	1.07
5053091--5053128	18	2.1	18	85	9	51	36	0	5	57	1.21
5053209--5053242	16	2.1	17	89	10	54	58	0	0	41	0.98
5053275--5053310	17	2.2	17	90	9	58	30	0	0	69	0.89
5055443--5055475	17	2.0	17	88	5	50	57	0	0	42	0.98
5056368--5056406	12	3.2	12	89	7	60	43	0	2	53	1.14
5056429--5056473	22	2.1	22	84	8	58	24	2	2	71	1.09
5061968--5062015	24	2.0	24	100	0	96	25	12	16	45	1.82
5066427--5066481	22	2.6	22	78	13	62	67	1	1	29	1.11
5066731--5066783	22	2.4	22	90	6	81	52	0	1	45	1.11
5066730--5066781	21	2.5	21	85	11	72	53	0	1	44	1.11
5066731--5066794	21	3.0	20	82	15	58	54	0	1	43	1.09
5069326--5069380	25	2.2	26	84	12	71	52	1	1	43	1.22
5069509--5069544	17	2.1	18	89	5	56	66	2	2	27	1.19
5076347--5076386	13	3.1	14	79	17	50	40	2	0	57	1.12
5079744--5079785	21	2.0	21	86	4	59	54	2	0	42	1.13
5080371--5080403	16	2.1	15	94	5	57	57	0	3	39	1.14
5080622--5080670	24	2.0	24	96	0	89	46	10	12	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5084302--5084345	21	2.1	21	82	0	52	36	6	13	43	1.71
5088221--5088575	178	2.0	178	94	1	622	33	10	19	36	1.87
5097097--5097126	15	2.0	15	93	0	51	33	20	23	23	1.97
5097770--5097809	20	2.0	21	85	5	55	20	15	10	55	1.68
5101736--5101783	25	1.9	25	86	0	69	39	4	12	43	1.62
5101932--5101984	25	2.1	26	85	3	72	37	0	16	45	1.48
5102903--5102959	26	2.1	27	83	3	71	45	0	14	40	1.44
5101004--5103920	971	3.0	962	88	6	4483	38	4	16	40	1.69
5103671--5103723	25	2.1	25	89	0	79	39	3	13	43	1.62
5104049--5104142	43	2.2	43	79	12	104	44	4	7	43	1.51
5111548--5111645	14	6.9	14	74	15	85	47	26	6	19	1.72
5111529--5111761	28	8.1	29	74	8	147	47	29	4	18	1.68
5111533--5111768	57	4.1	57	76	9	187	46	30	4	19	1.68
5111669--5111728	16	3.9	16	68	16	54	45	36	3	15	1.62
5113550--5113584	1	35.0	1	94	0	61	97	2	0	0	0.19
5118393--5118431	15	2.5	15	87	4	51	82	5	7	5	0.96
5120328--5120409	41	2.0	41	83	4	103	35	19	14	30	1.92
5120915--5120964	22	2.3	22	82	6	57	34	22	14	30	1.93
5120806--5121088	133	2.1	131	78	5	309	24	16	16	42	1.88
5121048--5121110	22	2.9	22	78	4	65	31	19	15	33	1.93
5121105--5121229	36	3.4	36	71	3	106	23	16	15	45	1.84
5129653--5129708	25	2.2	25	84	6	69	37	3	12	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5130617--5130664	25	1.9	25	91	0	78	37	4	14	43	1.65
5130812--5130867	26	2.2	26	90	0	85	42	0	14	42	1.45
5128922--5131831	964	3.0	965	93	1	4853	38	4	16	40	1.69
5132244--5132306	14	4.4	14	74	16	58	74	4	11	9	1.20
5139437--5139661	28	7.9	28	73	14	156	47	29	4	19	1.68
5139471--5139545	14	5.3	14	75	15	73	50	24	5	20	1.68
5139536--5139619	37	2.3	36	82	13	100	45	34	3	16	1.65
5139437--5139661	57	3.9	55	77	9	191	47	29	4	19	1.68
5141398--5141433	18	2.0	18	88	0	54	61	5	8	25	1.46
5146255--5146294	15	2.6	15	88	4	53	82	5	7	5	0.94
5148064--5148103	12	3.3	12	96	0	71	25	20	12	42	1.86
5148043--5148091	18	2.7	18	87	0	71	26	14	14	44	1.83
5148064--5148109	24	1.9	24	86	0	65	28	19	10	41	1.85
5148216--5148297	41	2.0	41	83	4	103	35	19	14	30	1.92
5148343--5148497	83	1.8	84	80	2	186	32	11	16	39	1.84
5148695--5148738	22	2.0	22	90	0	70	29	11	18	40	1.85
5148728--5149019	131	2.2	132	80	3	338	23	17	17	41	1.90
5149495--5149540	17	2.8	17	86	3	58	65	0	0	34	0.93
5149513--5149545	16	2.1	15	94	5	57	78	0	0	21	0.75
5150949--5151177	29	7.9	29	76	6	189	48	30	3	18	1.63
5150949--5151102	14	10.7	14	76	7	130	49	28	3	18	1.65
5150949--5151225	58	4.8	58	75	9	219	48	30	2	18	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5150949--5151177	87	2.6	88	81	8	245	48	30	3	18	1.63
5151151--5151197	14	3.1	15	81	9	60	51	36	0	12	1.40
5150949--5151186	14	16.4	14	69	13	99	48	30	2	18	1.63
5152718--5152818	51	2.0	51	86	0	139	15	24	20	38	1.92
5159421--5159466	16	2.9	15	87	6	56	32	0	4	63	1.14
5159882--5159930	25	2.0	25	91	0	80	53	6	2	38	1.38
5163348--5163385	14	2.7	14	84	11	51	57	0	0	42	0.98
5168853--5169087	116	2.0	117	92	0	391	30	30	9	29	1.89
5174197--5174223	1	27.0	1	100	0	54	100	0	0	0	0.00
5175837--5175881	22	2.0	22	87	8	65	33	0	11	55	1.35
5182839--5182866	13	2.2	13	100	0	56	64	7	0	28	1.20
5185930--5186261	165	2.0	164	94	0	583	33	23	12	30	1.92
5217297--5217333	19	2.0	20	89	10	60	37	2	0	59	1.12
5217407--5217451	20	2.2	21	84	4	56	53	2	2	42	1.25
5218033--5218068	4	8.8	4	93	6	63	27	0	22	50	1.50
5218944--5218974	16	2.0	16	93	6	55	74	12	0	12	1.08
5219057--5219114	11	5.4	11	73	17	50	60	1	0	37	1.07
5219057--5219105	22	2.1	24	85	14	68	61	2	0	36	1.08
5219062--5219108	12	3.9	12	81	8	51	59	0	0	40	0.97
5222001--5222043	19	2.3	19	87	0	59	69	2	0	27	1.00
5224423--5224460	14	2.6	15	83	4	51	50	0	0	50	1.00
5226208--5226333	61	2.1	60	82	8	150	52	12	5	29	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5228233--5228293	32	1.9	32	89	0	95	21	16	36	26	1.94
5233367--5233414	19	2.6	19	83	6	55	50	2	0	47	1.12
5239033--5239090	23	2.5	24	81	10	77	50	0	6	43	1.29
5241542--5241632	30	3.0	30	98	0	173	29	16	10	42	1.82
5266051--5266075	8	3.1	8	100	0	50	24	12	12	52	1.72
5266084--5266127	22	2.0	22	95	0	79	36	11	9	43	1.72
5279157--5279262	17	6.0	19	74	17	95	50	13	9	26	1.71
5279157--5279262	35	3.0	35	78	12	117	50	13	9	26	1.71
5279279--5279336	18	3.2	18	73	9	64	39	15	13	31	1.86
5279256--5279356	36	2.7	38	80	9	127	43	12	12	30	1.81
5279340--5279470	24	5.8	21	71	13	66	42	12	9	35	1.76
5279387--5279477	44	2.0	45	83	6	114	43	14	7	34	1.74
5279410--5279510	42	2.3	43	78	6	107	42	10	9	36	1.73
5280429--5280495	13	4.7	15	73	14	70	35	7	22	34	1.82
5280429--5280511	28	3.0	28	90	0	130	39	8	20	31	1.82
5281318--5281375	22	2.6	22	73	7	55	6	17	1	74	1.12
5281694--5281765	25	2.8	25	83	8	83	19	22	31	26	1.97
5281800--5281846	3	15.7	3	100	0	94	31	0	0	68	0.90
5281863--5281906	6	7.2	6	80	14	54	15	2	0	81	0.78
5281867--5281920	17	3.1	17	81	2	63	12	5	0	81	0.85
5282327--5282365	10	3.9	10	86	0	60	23	0	5	71	1.05
5282328--5282375	10	4.8	10	81	0	51	16	0	10	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5282328--5282375	20	2.4	20	96	0	87	16	0	10	72	1.10
5286257--5286365	53	2.1	52	81	10	123	55	10	16	17	1.67
5286629--5286679	11	4.5	11	78	9	57	84	0	7	7	0.78
5286629--5286672	12	3.6	12	81	3	52	84	0	6	9	0.79
5286629--5286679	10	4.5	11	82	17	61	84	0	7	7	0.78
5287484--5287743	119	2.2	119	84	0	322	20	20	13	45	1.84
5287866--5287902	17	2.2	17	90	0	56	21	18	10	48	1.78
5288235--5288360	51	2.5	51	75	5	137	30	17	11	39	1.86
5288320--5288361	18	2.4	19	80	15	54	30	16	16	35	1.92
5288564--5288733	93	1.8	93	82	7	220	22	19	12	44	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117