genome.fa.s90.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  65  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14133131--14133205	21	3.5	21	87	1	96	36	6	14	42	1.72
14133567--14133864	42	7.1	42	87	1	395	26	12	15	45	1.81
14133567--14133857	125	2.3	126	85	4	399	26	12	14	46	1.80
14134936--14134975	11	3.5	11	82	3	53	10	0	17	72	1.11
14134935--14134976	12	3.6	12	80	6	59	9	0	16	73	1.08
14135044--14135380	183	1.8	183	79	11	386	43	8	11	36	1.70
14138084--14138188	52	2.0	52	88	0	156	42	5	20	30	1.75
14138685--14138764	25	3.2	24	76	13	72	40	8	33	17	1.81
14139633--14139728	25	3.9	25	77	8	90	39	5	34	20	1.75
14137993--14140568	959	2.7	957	87	5	3714	32	8	25	33	1.86
14149462--14149540	32	2.5	32	91	4	124	36	10	24	29	1.88
14149694--14149720	10	2.7	10	100	0	54	74	0	0	25	0.83
14149683--14149737	18	2.8	19	78	8	58	72	7	1	18	1.16
14154809--14154847	16	2.4	16	86	0	51	43	23	2	30	1.67
14159039--14159079	13	3.2	13	80	16	50	75	0	21	2	0.92
14160067--14160140	3	24.7	3	97	0	139	66	0	1	32	1.00
14161351--14161393	21	2.1	20	82	4	50	67	16	6	9	1.40
14165473--14165541	6	12.0	6	80	14	56	75	0	8	15	1.04
14165472--14165540	18	3.9	18	75	17	65	76	0	7	15	0.99
14165479--14165540	12	4.8	12	86	9	70	77	0	6	16	0.97
14165463--14165541	39	2.0	39	87	4	115	74	0	10	15	1.06
14166599--14166688	25	3.6	25	92	0	135	23	14	16	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14166615--14166662	13	3.8	13	76	15	55	22	16	16	43	1.87
14166603--14166668	12	5.3	12	71	20	55	21	13	18	46	1.83
14167018--14167080	32	2.0	32	93	6	110	36	17	20	25	1.94
14167344--14167466	46	2.7	46	83	2	149	30	12	17	39	1.87
14167715--14167827	44	2.6	43	75	9	111	36	15	11	37	1.83
14170928--14170985	24	2.2	24	79	11	62	20	6	10	62	1.50
14172696--14172728	17	1.9	17	93	0	57	33	0	6	60	1.21
14175480--14175852	140	2.6	142	76	7	332	32	11	14	41	1.82
14177218--14177369	7	22.6	7	70	12	59	44	31	0	23	1.59
14177242--14177369	20	6.3	20	76	13	84	42	31	0	25	1.61
14177226--14177355	13	9.7	14	70	11	76	43	31	0	23	1.59
14178495--14178530	18	2.1	18	94	5	65	55	0	0	44	0.99
14178672--14178746	29	2.6	29	74	4	80	24	14	12	49	1.77
14188211--14188250	21	2.0	20	90	5	62	45	12	12	30	1.79
14189252--14189277	2	13.0	2	100	0	52	50	0	0	50	1.00
14191345--14191681	167	2.0	167	97	0	629	42	18	13	25	1.87
14192169--14192231	32	2.0	32	81	9	76	42	14	14	28	1.84
14192366--14192407	15	2.6	16	81	11	50	35	2	11	50	1.52
14192379--14192451	15	4.7	15	72	9	65	36	1	10	50	1.46
14192352--14192409	17	3.5	17	71	17	50	32	1	12	53	1.48
14192520--14192587	28	2.3	30	77	10	77	66	5	5	22	1.36
14192613--14192647	17	2.1	17	88	0	52	80	2	11	5	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14193582--14193641	3	19.3	3	89	6	93	63	3	1	31	1.20
14198446--14198485	21	2.0	20	95	5	71	45	12	12	30	1.79
14198446--14198483	10	3.7	10	80	19	51	47	13	13	26	1.79
14202855--14202902	6	8.0	6	95	0	69	0	22	0	77	0.78
14202856--14202903	12	4.0	12	91	0	78	0	25	0	75	0.81
14202856--14202903	9	5.3	9	84	0	60	0	25	0	75	0.81
14203126--14203155	14	2.1	14	100	0	60	50	0	20	30	1.49
14203227--14203273	23	2.0	24	91	8	78	63	0	19	17	1.30
14203758--14203938	49	3.7	49	81	4	204	27	12	15	44	1.82
14203760--14203938	97	1.8	97	84	0	241	26	12	15	44	1.83
14203961--14204070	52	2.2	49	82	8	123	31	10	14	43	1.78
14204221--14204262	20	2.1	20	100	0	84	47	9	19	23	1.78
14204643--14204915	141	1.9	141	79	6	302	39	12	9	38	1.76
14206472--14206600	6	20.8	6	74	12	84	49	31	1	17	1.56
14206511--14206618	19	5.7	19	77	13	91	49	33	0	16	1.53
14206522--14206595	25	2.9	26	80	9	91	45	36	1	16	1.56
14206516--14206619	37	2.8	38	83	12	119	48	34	0	16	1.53
14206484--14206618	19	7.2	18	73	16	80	49	31	1	17	1.55
14214735--14214787	28	1.9	27	84	3	70	52	5	13	28	1.62
14215081--14215145	22	2.9	22	88	2	94	46	16	3	33	1.63
14215417--14215478	25	2.5	26	76	12	67	48	16	17	17	1.82
14215408--14215479	25	2.9	24	72	15	65	47	18	15	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14215798--14215835	20	1.9	20	88	0	58	39	18	10	31	1.85
14218093--14218134	17	2.5	17	84	7	59	71	2	0	26	0.98
14218729--14218762	18	1.9	18	88	5	52	41	0	5	52	1.25
14221335--14221637	152	2.0	151	94	0	525	51	11	5	30	1.62
14224322--14224391	35	2.0	35	91	5	115	37	7	2	52	1.44
14224332--14224411	35	2.3	35	85	8	103	35	7	5	52	1.51
14226490--14226540	26	2.0	25	85	14	70	60	0	3	35	1.15
14235963--14236004	15	2.7	16	82	13	52	28	4	4	61	1.36
14237794--14237830	18	2.2	18	85	9	51	67	2	2	27	1.17
14238351--14238392	21	2.0	22	85	4	59	38	2	0	59	1.10
14239841--14239914	38	1.9	39	86	8	107	8	21	0	70	1.13
14240872--14240910	20	1.9	20	84	5	51	66	12	2	17	1.35
14251904--14251949	19	2.5	19	96	3	85	52	0	0	47	1.00
14251941--14252012	7	10.1	7	80	19	78	72	1	0	26	0.93
14251937--14252012	25	2.8	26	76	20	75	71	1	0	27	0.95
14251936--14252021	39	2.2	41	77	12	108	67	1	0	31	0.98
14261280--14261466	56	3.5	56	66	20	137	27	16	10	45	1.80
14261752--14261787	15	2.4	15	90	0	54	63	11	8	16	1.49
14262310--14262435	68	1.9	67	86	5	182	43	15	6	34	1.72
14269955--14270138	61	3.0	60	78	9	183	29	15	12	42	1.84
14270065--14270319	62	4.1	62	71	9	171	34	13	12	39	1.83
14270301--14270440	71	2.0	71	90	8	225	30	11	11	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14272517--14272548	16	1.9	17	93	6	57	34	6	0	59	1.23
14273029--14273087	26	2.3	25	85	5	73	55	1	0	42	1.09
14273594--14273657	27	2.4	28	80	12	73	53	0	4	42	1.22
14274035--14274084	22	2.1	24	82	17	61	50	0	0	50	1.00
14274062--14274105	20	2.3	19	84	4	61	52	0	0	47	1.00
14275485--14275521	19	1.9	19	88	0	56	43	2	0	54	1.14
14275465--14275521	27	2.1	28	83	3	71	42	1	3	52	1.28
14278892--14278918	8	3.4	8	100	0	54	11	0	25	62	1.28
14279777--14279813	16	2.3	16	95	0	65	32	5	24	37	1.78
14285699--14285745	21	2.3	21	82	10	53	80	14	2	2	0.89
14285989--14286029	17	2.5	17	92	4	66	65	2	0	31	1.05
14286015--14286071	29	2.0	29	82	6	71	70	1	7	21	1.20
14286239--14286285	23	2.0	23	91	0	76	36	10	8	44	1.70
14294847--14295004	9	18.2	8	72	15	77	58	2	3	35	1.27
14294866--14294908	8	5.2	8	83	11	52	55	0	0	44	0.99
14294857--14295004	17	8.6	17	71	11	97	58	2	2	36	1.27
14294847--14294976	36	3.6	38	77	15	100	58	2	3	36	1.26
14294947--14295028	24	3.5	24	74	17	66	63	3	3	29	1.28
14295070--14295118	16	2.8	17	82	17	57	69	6	0	24	1.11
14295071--14295125	16	3.2	17	80	15	51	69	7	0	23	1.14
14295473--14295531	17	3.2	18	79	13	59	38	3	3	54	1.34
14299767--14299843	33	2.3	32	82	8	84	41	14	19	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14299785--14299852	33	2.1	33	91	0	109	42	11	20	25	1.86
14301072--14301106	17	2.1	17	100	0	70	37	11	22	28	1.89
14301403--14301436	17	2.0	17	88	0	50	8	8	2	79	1.03
14301773--14301812	20	2.0	20	90	0	62	15	22	5	57	1.57
14312538--14314886	161	14.7	160	79	6	1814	33	9	13	42	1.78
14312777--14314886	320	6.6	320	79	7	1823	33	9	13	42	1.77
14315974--14316140	74	2.3	74	82	4	185	29	15	19	35	1.92
14316005--14316245	75	3.2	74	80	6	240	29	15	17	37	1.90
14317901--14317946	23	1.9	25	82	8	60	52	23	4	19	1.64
14322817--14323023	10	21.0	9	68	23	50	69	2	6	21	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117