genome.fa.s90.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  38  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9360514--9360538	11	2.3	11	100	0	50	52	16	0	32	1.44
9360589--9360614	9	2.9	9	100	0	52	57	7	0	34	1.27
9361438--9361490	23	2.4	22	87	9	72	37	15	3	43	1.64
9361535--9361624	22	4.1	22	72	13	78	34	8	4	52	1.53
9361866--9362024	22	7.3	22	79	0	113	37	5	7	49	1.55
9361866--9362013	44	3.4	44	81	0	152	37	4	8	49	1.54
9362120--9362315	22	9.1	22	70	14	104	36	10	3	49	1.53
9362340--9362395	22	2.7	21	83	10	53	35	5	8	50	1.57
9362426--9362510	22	3.9	22	76	0	71	36	10	2	50	1.50
9370144--9370178	17	2.0	18	94	5	63	11	17	0	71	1.14
9371614--9371656	2	21.5	2	90	0	68	48	2	2	46	1.27
9371695--9371750	20	2.8	20	86	0	76	44	7	5	42	1.54
9371708--9371746	10	3.9	10	96	0	69	48	7	2	41	1.45
9371701--9371750	6	8.3	6	84	0	55	46	6	4	44	1.47
9374623--9374793	51	3.4	50	76	7	141	28	11	20	39	1.88
9375724--9375769	23	2.0	23	100	0	92	43	34	4	17	1.69
9378486--9378601	18	6.6	18	80	5	139	27	4	36	31	1.76
9378947--9378984	6	6.3	6	100	0	76	34	50	0	15	1.45
9378977--9379034	24	2.4	24	97	0	107	31	43	5	20	1.74
9388210--9388268	29	2.1	28	81	9	66	32	0	5	62	1.17
9391848--9391947	18	5.7	18	80	7	98	35	35	4	26	1.75
9391908--9391936	15	1.9	15	100	0	58	48	20	0	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9399455--9399654	86	2.4	84	82	5	224	40	16	15	28	1.89
9399437--9399724	42	6.7	42	70	11	181	39	15	17	27	1.90
9401889--9401965	37	2.1	37	80	7	86	33	10	11	44	1.75
9404184--9404293	33	3.4	32	77	7	105	48	9	14	28	1.74
9404399--9404862	132	3.6	128	73	10	347	47	12	19	21	1.81
9406255--9406308	24	2.2	24	93	0	90	22	27	0	50	1.50
9406907--9406957	26	2.0	26	96	0	93	64	11	7	15	1.48
9408759--9408791	16	2.1	15	94	5	57	60	6	0	33	1.21
9413443--9413482	4	10.2	4	91	5	64	50	0	2	47	1.14
9413893--9413925	17	1.9	17	88	11	50	69	0	12	18	1.18
9417829--9417874	23	2.0	23	91	4	74	10	15	4	69	1.32
9418494--9418562	16	4.2	18	75	15	69	31	4	0	63	1.14
9418503--9418545	19	2.4	19	88	7	63	30	2	0	67	1.03
9420700--9420832	63	2.1	63	84	2	169	39	6	6	46	1.57
9423635--9423672	17	2.2	18	95	4	69	71	0	7	21	1.11
9426140--9426182	22	1.9	22	85	4	59	44	9	4	41	1.57
9426647--9426690	17	2.6	16	79	10	52	18	4	31	45	1.69
9427007--9427075	19	3.6	19	82	5	77	23	4	30	42	1.73
9427009--9427093	19	4.4	19	78	10	66	21	2	31	44	1.65
9429621--9429796	50	3.5	50	86	5	234	42	10	10	36	1.74
9437170--9437237	29	2.3	31	76	5	77	48	1	2	47	1.26
9437549--9437603	27	2.0	27	83	13	69	45	0	1	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9444273--9444314	15	2.9	14	86	10	57	11	7	35	45	1.69
9444325--9444432	16	6.9	15	72	9	81	22	0	30	46	1.58
9444280--9444427	47	3.2	44	76	16	131	22	2	31	43	1.64
9445864--9445905	14	3.2	13	83	9	50	2	14	2	80	0.90
9445872--9445906	14	2.5	14	85	0	52	2	14	0	82	0.77
9446193--9446383	86	2.2	89	85	2	262	38	19	19	23	1.94
9446376--9446428	23	2.3	24	84	9	67	35	15	16	32	1.90
9446376--9446435	23	2.6	22	80	12	59	36	16	16	30	1.91
9446398--9446977	110	5.3	110	79	4	587	39	17	20	23	1.92
9446605--9446648	22	2.0	22	86	0	61	34	18	20	27	1.96
9446396--9446983	220	2.7	220	82	4	715	39	17	19	22	1.92
9446934--9446999	22	3.0	22	79	0	87	31	15	22	30	1.95
9446825--9447115	131	2.2	132	85	1	370	37	18	20	23	1.94
9447213--9447255	22	2.0	22	90	0	68	27	16	27	27	1.97
9447094--9447375	150	1.9	150	93	0	483	34	15	17	32	1.91
9451402--9451450	22	2.2	22	100	0	98	28	18	32	20	1.96
9454725--9454844	16	7.9	15	76	8	100	20	1	30	47	1.60
9454777--9454843	31	2.2	31	89	5	100	14	0	37	47	1.45
9455215--9455286	34	2.2	33	83	16	89	69	1	0	29	0.97
9462296--9462365	3	24.0	3	80	8	56	65	1	0	32	1.01
9462308--9462384	40	1.9	41	83	2	102	68	2	2	25	1.15
9462522--9462547	12	2.2	12	100	0	52	92	0	7	0	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9463466--9463514	3	16.0	3	89	4	71	61	2	2	34	1.19
9463779--9463915	30	4.7	30	74	8	88	48	30	0	20	1.50
9463779--9463981	14	13.8	14	65	14	70	47	31	0	20	1.57
9463777--9463862	44	1.9	45	83	6	113	48	34	0	16	1.46
9466696--9466742	25	2.0	23	83	8	58	38	6	0	55	1.26
9469411--9469450	21	1.9	21	84	0	53	52	0	0	47	1.00
9469900--9469950	25	2.1	24	82	10	59	62	1	0	35	1.06
9471558--9471600	18	2.4	18	76	0	50	32	2	0	65	1.06
9471601--9471654	20	2.7	20	91	0	81	24	7	9	59	1.54
9473793--9473845	19	2.7	20	76	8	54	37	0	0	62	0.96
9473838--9473910	36	2.0	36	89	5	112	41	1	5	52	1.33
9473918--9473972	11	5.0	11	76	14	60	63	0	0	36	0.95
9473904--9473972	33	2.0	35	86	10	99	60	0	0	39	0.97
9477563--9477700	11	12.9	11	65	24	55	63	1	1	34	1.13
9477562--9477698	23	5.9	22	74	17	102	63	1	1	33	1.12
9477562--9477638	15	5.5	14	68	20	54	63	1	0	35	1.03
9477574--9477705	26	5.2	26	73	16	100	62	1	2	33	1.16
9477605--9477717	25	4.4	25	72	12	86	60	0	3	35	1.20
9477562--9477689	4	32.8	4	66	16	63	64	1	1	32	1.13
9477680--9477712	16	2.1	16	94	5	59	57	0	3	39	1.14
9481370--9481403	3	11.3	3	100	0	68	32	0	0	67	0.91
9483203--9483246	18	2.5	17	82	10	52	47	4	0	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9483611--9483658	12	3.6	12	77	22	51	70	4	2	22	1.15
9497106--9497172	4	16.8	4	75	6	64	68	2	4	23	1.22
9497109--9497156	17	2.7	17	87	12	62	66	2	4	27	1.21
9500870--9500926	19	3.1	19	82	12	73	47	0	0	52	1.00
9502197--9502263	34	2.0	34	81	0	80	35	11	7	44	1.70
9502321--9502392	34	2.1	34	86	0	99	37	8	8	45	1.64
9502342--9502408	34	2.0	34	81	0	80	38	7	7	46	1.60
9503838--9503869	10	3.1	11	82	17	50	43	0	18	37	1.51
9516193--9516221	3	9.7	3	100	0	58	34	0	0	65	0.93
9516256--9516355	51	2.0	50	86	3	139	40	10	17	33	1.82
9519324--9519381	27	2.1	27	84	6	73	67	8	13	10	1.42
9519342--9519384	22	2.0	22	81	9	52	67	6	13	11	1.41
9520531--9520593	24	2.5	25	82	5	83	76	0	0	23	0.79
9520541--9520593	16	3.2	16	82	12	63	77	0	0	22	0.77
9520644--9520673	3	10.0	3	100	0	60	33	0	0	66	0.92
9525052--9525121	38	1.9	36	88	8	106	47	12	10	30	1.75
9532849--9532904	22	2.5	22	80	13	69	55	16	5	23	1.61
9532868--9532930	22	2.9	22	88	4	92	58	11	4	25	1.51
9532868--9532928	21	2.8	22	87	5	88	57	11	4	26	1.54
9532870--9532958	45	2.0	43	85	8	117	62	10	4	22	1.44
9534462--9534498	13	2.8	13	91	0	65	75	2	0	21	0.92
9534516--9534593	18	4.1	18	68	17	50	43	7	1	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9535558--9535703	52	2.8	52	84	6	181	27	21	8	41	1.83
9535728--9535769	11	3.8	11	93	0	75	50	28	0	21	1.49
9535728--9535772	22	2.0	22	100	0	90	51	26	0	22	1.49
9535987--9536063	25	3.2	24	74	3	75	20	36	10	32	1.87
9536628--9536774	52	2.8	52	83	6	174	27	23	7	41	1.81
9536809--9536839	11	2.8	11	90	0	53	51	25	0	22	1.48
9539501--9539529	15	2.0	15	93	6	51	55	0	0	44	0.99
9539534--9539595	31	2.0	31	90	0	97	38	14	1	45	1.55
9540153--9540185	14	2.4	14	90	5	50	24	3	30	42	1.70
9542613--9542688	17	4.4	18	76	14	72	63	0	0	36	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117