genome.fa.s90.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167915.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_18, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20765110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  6  of  117  ( 13967 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1507493--1507642	3	55.0	3	70	18	87	57	4	2	35	1.34
1507493--1507642	8	17.4	8	76	12	104	57	4	2	35	1.34
1507492--1507636	46	3.2	44	79	10	125	57	4	2	35	1.34
1513609--1513639	15	2.1	15	93	0	53	29	6	16	48	1.70
1514158--1514246	44	2.0	44	83	12	112	74	4	2	19	1.10
1514185--1514243	24	2.6	22	84	7	75	77	1	1	18	0.93
1515019--1515151	5	24.8	5	69	16	54	57	3	4	34	1.37
1515022--1515174	3	55.0	3	66	19	55	59	4	3	32	1.36
1515724--1515801	26	3.0	26	83	5	77	25	1	2	70	1.07
1532617--1532776	80	2.0	80	96	0	293	26	12	22	38	1.90
1535540--1535600	23	2.6	23	92	2	95	19	13	16	50	1.77
1549946--1550005	31	2.0	30	83	9	77	38	6	6	48	1.56
1555679--1555725	18	2.6	17	80	9	58	12	10	4	72	1.25
1560002--1560095	45	2.1	44	84	5	118	22	9	6	61	1.49
1560185--1560236	24	2.1	24	82	13	61	40	9	13	36	1.77
1560358--1560413	25	2.1	27	83	6	71	33	10	8	46	1.70
1560534--1560590	25	2.2	25	81	9	62	38	3	8	49	1.51
1560683--1560740	27	2.1	27	83	0	71	79	12	0	8	0.94
1561412--1561450	8	4.8	8	84	15	53	12	2	0	84	0.72
1561954--1561990	16	2.4	16	86	13	51	24	0	35	40	1.55
1566238--1566284	21	2.1	24	84	11	64	46	0	0	53	1.00
1569171--1569198	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1576529--1576756	115	2.0	115	96	0	420	36	15	13	33	1.87
1584022--1584104	29	2.9	28	71	13	71	39	2	6	51	1.39
1584427--1584485	27	2.2	26	79	8	66	49	5	1	44	1.34
1584482--1584612	62	2.1	62	80	9	151	48	3	9	39	1.51
1584884--1584940	26	2.1	27	93	3	98	33	26	8	31	1.87
1585014--1585059	2	24.0	2	86	8	69	0	47	2	50	1.13
1585009--1585061	17	3.2	17	86	7	74	0	47	1	50	1.12
1587108--1587136	2	14.5	2	100	0	58	51	0	0	48	1.00
1591725--1591764	13	3.0	13	92	3	62	0	10	0	90	0.47
1591725--1591761	14	2.5	15	95	4	67	0	8	0	91	0.41
1591725--1591761	18	2.1	18	95	5	67	0	8	0	91	0.41
1592730--1592797	18	3.6	19	74	14	61	50	1	1	47	1.19
1592739--1592797	20	3.0	20	69	14	50	49	1	1	47	1.21
1593367--1593400	17	2.0	17	88	0	50	35	0	0	64	0.94
1598174--1598231	30	1.9	30	85	0	80	48	13	5	32	1.65
1599501--1599556	25	2.3	25	93	3	96	41	1	0	57	1.09
1600524--1600548	2	12.5	2	100	0	50	52	0	0	48	1.00
1601853--1601900	14	3.4	14	82	0	51	45	8	6	39	1.59
1612684--1612733	17	3.3	17	69	30	58	24	24	4	48	1.68
1612668--1612733	28	2.4	27	92	5	105	24	25	4	45	1.72
1615127--1615154	13	2.2	13	100	0	56	35	21	25	17	1.95
1615493--1615552	19	3.2	19	75	17	54	75	0	16	8	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1615488--1615521	11	3.2	11	87	4	52	76	0	17	5	0.98
1616807--1616919	46	2.5	46	89	0	163	42	10	13	33	1.78
1616899--1616941	21	2.0	21	90	0	68	34	9	18	37	1.83
1616807--1616937	46	2.8	46	87	2	147	41	10	12	35	1.78
1616913--1616971	31	1.9	31	92	0	100	32	10	16	40	1.82
1617001--1617059	30	2.0	30	93	0	100	47	16	6	28	1.72
1617117--1617183	31	2.2	31	88	0	98	38	10	16	34	1.83
1617153--1617303	66	2.4	58	78	16	185	36	11	15	36	1.84
1617172--1617303	66	2.0	66	93	0	228	35	12	16	35	1.86
1616961--1617580	277	2.2	277	87	1	911	40	12	13	33	1.82
1617372--1617425	21	2.7	20	88	2	72	38	12	14	33	1.85
1617449--1617656	66	3.1	66	79	9	247	38	10	15	35	1.81
1617568--1617594	14	1.9	14	100	0	54	37	7	18	37	1.79
1617515--1617656	72	2.0	72	88	2	214	38	10	15	35	1.82
1617620--1617675	21	2.7	21	91	2	87	37	10	16	35	1.83
1617582--1617734	79	1.9	79	83	0	198	33	11	20	34	1.89
1618006--1618184	41	4.4	41	76	7	150	25	10	17	46	1.79
1618025--1618184	82	2.0	82	85	8	220	26	10	17	45	1.80
1618362--1618398	19	1.9	19	100	0	74	75	0	10	13	1.04
1618365--1618417	18	2.9	18	80	2	52	71	1	15	11	1.22
1627888--1629565	187	9.0	186	80	5	1622	34	13	11	40	1.81
1627888--1629568	375	4.5	375	81	5	1786	34	13	11	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1640072--1640189	60	2.0	60	94	0	209	38	11	15	34	1.84
1646718--1646759	18	2.2	20	83	8	52	30	2	14	52	1.54
1652973--1653007	17	2.1	17	94	0	61	20	31	2	45	1.65
1654682--1654736	24	2.3	24	84	3	76	63	0	1	34	1.05
1654726--1654788	24	2.6	26	73	16	73	55	0	0	44	0.99
1654821--1654848	14	2.0	14	100	0	56	50	0	0	50	1.00
1661223--1661248	3	8.7	3	100	0	52	30	0	0	69	0.89
1663610--1664238	314	2.0	314	99	0	1240	44	14	12	27	1.82
1665606--1665630	12	2.1	12	100	0	50	16	52	24	8	1.70
1666231--1666282	3	17.3	3	87	0	50	67	11	0	21	1.22
1666231--1666282	9	5.8	9	83	0	59	67	11	0	21	1.22
1666231--1666285	27	2.0	27	85	0	74	69	10	0	20	1.18
1666465--1666499	16	2.2	16	89	0	52	37	20	2	40	1.67
1666548--1666590	22	2.0	22	86	9	61	62	4	2	30	1.28
1666619--1666868	125	2.0	125	100	0	500	40	14	8	36	1.77
1669845--1669875	12	2.5	12	94	5	53	80	0	0	19	0.71
1670522--1670641	34	3.5	34	77	2	107	40	20	16	23	1.91
1678540--1678602	21	3.0	21	80	13	67	60	3	4	31	1.33
1679245--1679282	15	2.5	16	87	8	53	23	2	10	63	1.39
1682819--1682861	21	2.0	21	82	8	52	60	2	6	30	1.35
1695188--1696759	357	4.5	357	82	5	1800	37	14	10	37	1.81
1695304--1696619	696	1.9	695	86	1	1886	36	14	10	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700781--1700848	36	1.9	36	87	3	102	38	14	13	33	1.85
1702228--1702277	19	2.7	18	76	11	57	74	2	0	24	0.93
1702401--1702427	2	13.5	2	100	0	54	51	0	0	48	1.00
1704122--1704161	21	1.9	21	84	0	53	20	2	0	77	0.88
1715765--1715919	83	1.9	83	94	0	274	19	26	11	42	1.85
1723339--1723429	46	2.0	46	95	0	164	27	21	19	30	1.98
1726958--1727093	65	2.1	65	91	0	218	26	17	25	30	1.97
1731760--1731801	22	1.9	22	85	0	57	47	7	11	33	1.68
1735427--1735485	25	2.4	25	80	5	68	40	16	28	13	1.87
1751042--1751080	21	1.9	20	84	5	51	56	0	2	41	1.13
1751110--1751169	29	2.0	31	90	6	97	50	0	0	50	1.00
1751114--1751185	31	2.4	30	84	9	85	50	1	0	48	1.09
1752190--1752245	20	2.8	20	88	2	76	25	0	10	64	1.26
1752215--1752274	25	2.4	24	81	10	68	25	0	10	65	1.24
1755641--1755669	2	14.5	2	100	0	58	48	0	0	51	1.00
1763869--1763910	19	2.3	19	88	12	61	61	4	0	33	1.17
1764127--1764181	18	3.2	18	82	15	71	54	1	0	43	1.10
1764166--1764209	21	2.1	21	83	8	54	29	0	0	70	0.88
1768651--1768783	68	2.0	68	84	11	175	36	17	15	30	1.90
1780610--1780645	13	2.8	12	88	12	54	11	8	19	61	1.54
1782481--1782918	148	2.9	150	79	8	424	38	22	17	21	1.93
1789063--1789100	2	19.0	2	84	10	51	44	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797419--1797461	21	2.0	23	86	13	65	44	0	2	53	1.13
1797425--1797472	20	2.4	20	80	10	53	37	0	4	58	1.18
1802451--1802509	31	1.9	31	85	0	82	33	5	6	54	1.49
1808108--1809164	357	3.0	355	85	2	1408	37	12	13	35	1.83
1812402--1812474	38	1.9	38	100	0	146	34	16	16	32	1.91
1823114--1823230	58	2.0	58	100	0	234	41	15	8	34	1.77
1835228--1835270	16	2.6	17	77	7	52	44	0	9	46	1.35
1835143--1835362	119	1.9	119	89	4	347	36	11	5	45	1.65
1835143--1835361	60	3.7	59	85	6	300	36	11	5	45	1.66
1835411--1835547	11	12.0	11	69	21	54	75	3	2	17	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117