genome.fa.s20.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  101  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33136339--33136396	30	1.9	30	89	0	89	27	22	6	43	1.79
33139245--33139357	46	2.5	46	95	2	201	38	15	23	23	1.92
33139296--33139424	67	1.9	67	95	0	231	37	13	24	23	1.92
33139359--33139539	46	3.9	46	88	1	247	39	14	24	20	1.91
33139253--33139470	113	1.9	113	90	0	346	38	14	24	22	1.92
33141002--33141031	3	10.0	3	92	0	51	0	66	3	30	1.07
33144362--33144391	15	2.0	15	93	0	51	10	6	10	73	1.25
33151091--33151142	20	2.8	18	78	21	63	44	1	3	50	1.31
33161766--33161817	24	2.2	24	89	0	77	55	5	1	36	1.35
33170503--33170570	31	2.2	31	86	5	93	23	27	32	16	1.96
33170642--33170682	18	2.4	17	83	4	55	9	26	43	19	1.82
33171147--33171201	27	2.0	28	89	10	87	25	21	27	25	2.00
33174871--33174914	3	15.7	3	78	21	51	34	0	2	63	1.07
33174883--33174920	20	1.9	20	100	0	76	31	0	2	65	1.06
33176912--33176956	20	2.3	19	84	3	63	53	15	6	24	1.66
33176909--33176954	19	2.4	19	85	7	67	52	17	6	23	1.68
33179906--33179994	20	4.4	21	80	7	103	30	12	7	49	1.69
33179916--33180019	20	5.1	20	79	12	79	29	9	11	49	1.71
33182134--33182172	14	2.8	14	81	14	53	43	10	17	28	1.82
33182670--33182700	16	1.9	16	93	0	53	48	0	0	51	1.00
33182632--33182697	29	2.2	30	86	10	91	54	0	0	45	0.99
33184026--33184103	37	2.0	40	81	18	94	48	1	1	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33192330--33192443	43	2.7	42	83	8	133	25	14	26	33	1.95
33196911--33196948	20	1.9	20	94	0	67	18	0	5	76	0.97
33197803--33197879	32	2.4	32	80	0	91	44	6	24	24	1.77
33199770--33199794	13	1.9	13	100	0	50	32	28	40	0	1.57
33208014--33208156	30	4.8	30	70	6	101	25	32	16	25	1.96
33208037--33208181	45	3.2	45	72	7	141	28	31	16	23	1.96
33207990--33208181	90	2.1	90	88	0	285	27	31	17	24	1.97
33209942--33210027	47	1.9	44	85	9	104	23	17	29	30	1.97
33210936--33211003	30	2.3	30	92	0	109	17	22	30	29	1.97
33212972--33213138	46	3.6	45	72	15	144	30	28	19	21	1.97
33212979--33213149	93	1.8	93	91	2	281	29	27	20	22	1.98
33215909--33215947	15	2.6	15	83	0	60	58	17	12	10	1.61
33218896--33219068	93	1.9	93	86	2	249	30	26	19	24	1.98
33224577--33224704	40	3.2	40	92	2	197	21	22	25	29	1.99
33224577--33224719	40	3.6	40	90	3	182	22	22	25	30	1.99
33229006--33229130	47	2.7	47	86	1	153	22	13	29	34	1.92
33230188--33230318	66	2.0	66	86	5	185	18	29	25	26	1.98
33234331--33234499	42	4.0	41	82	8	198	27	14	25	33	1.94
33238184--33238395	106	2.0	106	98	0	406	34	16	17	30	1.93
33238447--33238539	40	2.3	40	88	3	134	26	25	21	25	1.99
33246356--33246619	40	6.7	40	89	5	360	25	27	21	25	1.99
33253487--33253595	42	2.6	42	95	0	191	31	15	23	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33253731--33253760	16	1.9	15	93	6	51	26	13	23	36	1.92
33262138--33262170	7	4.7	7	85	14	50	84	0	12	3	0.72
33262138--33262175	14	2.6	14	88	12	51	84	0	13	2	0.73
33264689--33264736	24	2.0	24	84	12	62	58	0	33	8	1.28
33269098--33269384	48	6.0	47	80	6	238	28	18	28	24	1.98
33269100--33269385	96	3.0	97	81	8	332	28	18	28	24	1.98
33271761--33271855	35	2.7	35	73	9	104	33	24	10	31	1.89
33275537--33275720	92	2.0	92	95	0	332	44	22	11	22	1.84
33277120--33277150	13	2.4	13	100	0	62	12	22	6	58	1.58
33279241--33279405	35	4.7	34	79	5	152	35	21	10	32	1.88
33279297--33279423	35	3.6	35	83	2	121	34	23	11	29	1.91
33284141--33284199	30	2.0	30	86	6	84	47	8	8	35	1.64
33284762--33284798	19	2.0	18	89	5	56	16	40	24	18	1.90
33287826--33287896	31	2.3	31	90	0	115	28	23	16	30	1.97
33288102--33288211	25	4.3	26	81	4	129	29	21	19	30	1.97
33288107--33288211	51	2.1	49	82	7	122	29	20	19	30	1.97
33289016--33289103	27	3.3	27	88	3	115	19	25	19	36	1.95
33289244--33289452	27	7.8	27	79	5	210	28	8	22	41	1.83
33289247--33289493	54	4.6	53	77	6	228	28	8	22	40	1.83
33289244--33289479	81	2.9	81	86	4	325	28	8	21	41	1.82
33289219--33289493	27	10.2	27	78	6	157	28	8	22	40	1.83
33289471--33289601	27	4.9	27	86	0	190	41	9	19	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33289471--33289601	54	2.4	54	92	0	217	41	9	19	29	1.82
33289430--33289639	81	2.6	81	72	0	204	36	8	20	35	1.83
33297714--33297760	24	1.9	24	83	12	60	55	0	36	8	1.31
33300942--33301045	27	3.8	26	83	7	127	19	24	20	36	1.95
33300942--33301052	54	2.1	54	89	3	170	18	23	21	36	1.94
33301637--33301675	16	2.4	17	91	4	62	43	10	15	30	1.80
33303596--33303629	17	2.0	17	94	0	59	35	8	32	23	1.86
33307538--33307634	49	2.0	49	95	0	176	37	11	28	22	1.89
33308459--33308546	27	3.2	26	82	7	95	19	21	22	36	1.95
33308498--33308570	27	2.7	26	81	10	83	19	24	17	38	1.93
33308459--33308570	54	2.1	54	81	3	127	19	22	20	37	1.94
33308748--33309146	131	3.0	131	100	0	798	24	25	18	32	1.97
33312975--33313059	38	2.2	38	91	0	134	22	27	25	24	2.00
33312988--33313077	38	2.4	38	84	0	117	25	21	23	30	1.99
33313054--33313156	43	2.5	42	82	3	127	15	24	32	28	1.95
33313113--33313560	227	2.0	227	100	0	896	28	11	25	34	1.90
33316777--33316824	15	3.0	16	85	14	64	77	0	22	0	0.78
33316779--33316826	11	4.5	10	80	12	51	75	0	25	0	0.81
33319215--33319531	105	3.0	105	98	0	607	31	21	18	29	1.97
33334237--33334268	15	2.1	15	100	0	64	31	6	12	50	1.65
33337964--33338107	41	3.5	41	91	0	227	26	16	25	31	1.96
33337974--33338152	81	2.2	82	85	4	229	27	16	24	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33342175--33342331	5	31.4	5	100	0	314	59	0	0	40	0.97
33344482--33344807	180	1.8	180	86	0	481	32	19	8	39	1.82
33345387--33345626	50	4.8	50	80	3	266	30	25	18	25	1.98
33345448--33345630	101	1.8	101	89	2	287	31	25	18	25	1.97
33348204--33348268	34	2.0	34	81	6	80	32	26	15	26	1.95
33350114--33350223	26	4.2	26	97	0	184	36	24	5	33	1.79
33352668--33352714	20	2.4	19	76	13	51	51	0	0	48	1.00
33353474--33353557	22	4.1	19	78	17	80	60	0	2	36	1.10
33353474--33353557	41	2.0	41	82	13	102	60	0	2	36	1.10
33354572--33354611	19	2.0	20	85	4	55	27	2	2	67	1.16
33354578--33354611	9	3.4	10	88	12	52	29	0	0	70	0.87
33355102--33355139	16	2.6	16	84	16	55	36	0	0	63	0.95
33357201--33357243	14	2.9	15	86	6	61	32	6	2	58	1.38
33357731--33357955	120	1.9	120	83	0	297	31	16	15	36	1.90
33360804--33360828	11	2.3	11	100	0	50	36	0	36	28	1.58
33361720--33361769	24	2.1	23	81	3	55	18	6	10	66	1.42
33362269--33362315	9	5.0	9	82	7	58	53	2	4	40	1.32
33365796--33365855	30	2.0	30	100	0	120	20	6	20	53	1.67
33369344--33370156	271	3.0	271	97	0	1536	31	29	13	25	1.93
33370391--33370420	15	2.0	15	100	0	60	53	0	6	40	1.27
33376864--33376932	24	2.7	25	82	15	79	18	4	1	75	1.05
33376872--33376963	32	3.0	29	72	21	71	22	2	2	72	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33376864--33376955	17	5.7	16	76	14	73	20	3	2	73	1.07
33376862--33376942	5	16.0	5	73	19	62	18	3	2	75	1.07
33378639--33378709	36	2.0	36	94	0	124	21	28	11	39	1.87
33379552--33379730	99	1.8	99	89	4	281	23	16	30	29	1.96
33379767--33379791	11	2.3	11	100	0	50	92	0	8	0	0.40
33380360--33380389	15	2.0	15	93	0	51	50	0	10	40	1.36
33382679--33382761	37	2.2	37	86	0	112	27	15	19	37	1.92
33385189--33385221	11	2.9	12	86	13	52	33	0	0	66	0.92
33388002--33388201	104	1.9	104	89	0	310	25	17	26	30	1.97
33393331--33393384	19	2.8	19	71	23	51	27	1	3	66	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186