genome.fa.s20.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  114  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37778585--37778651	30	2.2	30	89	0	107	52	0	34	13	1.41
37782380--37783240	139	6.2	139	100	0	1722	30	27	19	22	1.98
37783084--37783254	93	1.8	93	88	2	263	29	27	19	22	1.98
37788776--37788897	43	2.9	42	73	7	120	36	27	14	22	1.93
37798876--37798954	37	2.1	37	88	4	115	25	30	18	25	1.98
37798893--37799321	217	2.0	217	100	0	858	28	26	20	25	1.99
37803225--37803259	15	2.3	15	90	0	52	28	5	11	54	1.59
37806966--37807215	82	3.1	81	63	24	186	45	3	4	46	1.39
37806980--37807424	157	2.8	153	80	11	385	46	3	4	46	1.40
37807358--37807399	15	2.7	16	82	14	52	52	2	0	45	1.13
37807367--37807408	15	2.9	15	82	10	52	52	0	0	47	1.00
37814548--37814608	30	2.0	30	83	0	77	31	22	8	37	1.84
37827752--37828056	40	7.6	40	92	2	470	26	21	27	24	1.99
37836201--37836399	91	2.2	91	92	0	326	42	27	6	23	1.79
37836866--37837033	43	4.0	42	77	10	139	30	23	18	27	1.98
37838016--37838099	42	2.0	42	92	0	141	34	16	8	40	1.79
37843497--37843553	25	2.3	24	81	3	60	26	21	21	31	1.98
37843506--37843553	25	2.0	25	83	4	62	27	22	20	29	1.99
37843570--37843623	25	2.2	25	86	3	83	35	18	24	22	1.96
37855596--37856030	37	11.6	38	77	5	288	35	19	15	30	1.92
37855876--37856019	78	1.8	78	87	0	216	29	18	15	36	1.92
37861228--37861490	40	6.6	40	88	3	325	24	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37861267--37861525	80	3.3	80	85	3	256	25	20	27	25	1.99
37881611--37881790	48	3.8	47	76	7	166	29	21	27	21	1.98
37881614--37881790	96	1.8	96	84	2	239	29	20	27	22	1.98
37898844--37898895	25	2.1	25	85	3	70	26	19	19	34	1.95
37898941--37898980	10	3.9	10	87	6	62	30	20	20	30	1.97
37906450--37906532	30	2.7	31	90	5	143	24	26	15	33	1.95
37906740--37906824	25	3.5	24	84	9	109	27	22	23	27	1.99
37906868--37906907	10	3.9	10	87	6	62	30	20	20	30	1.97
37914013--37914044	14	2.4	13	90	10	55	18	6	12	62	1.50
37925449--37925543	27	3.5	27	80	0	118	32	16	21	29	1.95
37925529--37925596	26	2.6	27	81	11	86	41	17	10	30	1.83
37925564--37925922	27	13.3	27	77	5	251	40	19	8	30	1.82
37926161--37926283	41	3.0	41	90	0	201	21	23	30	25	1.99
37926683--37926740	22	2.6	22	83	0	71	17	15	22	44	1.86
37932661--37932709	21	2.3	21	89	6	73	46	10	18	24	1.79
37934544--37934640	40	2.4	40	81	3	115	31	11	25	30	1.91
37937733--37937831	28	3.5	28	87	4	119	27	15	27	30	1.96
37947264--37947362	28	3.5	28	87	4	119	27	15	27	30	1.96
37954150--37954276	55	2.3	55	80	0	146	17	26	26	29	1.97
37960757--37960818	30	2.1	30	96	0	115	16	3	24	56	1.55
37966381--37966442	30	2.1	30	96	0	115	16	3	24	56	1.55
37971696--37971727	6	5.7	6	85	14	50	84	0	0	15	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37971696--37971726	16	1.9	16	100	0	62	83	0	0	16	0.64
37976947--37976985	19	2.1	19	90	4	62	38	2	5	53	1.37
37978760--37978860	50	2.0	50	98	0	193	36	7	27	27	1.85
37985872--37986113	41	5.9	41	90	0	376	22	28	19	29	1.98
37985873--37986113	82	2.9	82	93	0	419	22	28	19	29	1.98
37986232--37986728	128	3.9	128	96	2	896	40	17	8	34	1.79
37986232--37986728	192	2.6	192	96	2	896	40	17	8	34	1.79
37990974--37991007	15	2.3	15	90	10	52	38	17	5	38	1.74
38004140--38004166	10	2.7	10	100	0	54	55	22	0	22	1.44
38004107--38004255	74	2.0	74	93	0	253	48	22	4	24	1.70
38004323--38004398	34	2.2	34	95	0	134	44	14	6	34	1.71
38005594--38005702	34	3.2	34	81	2	130	32	10	13	44	1.77
38005615--38005733	34	3.5	34	78	6	100	32	10	12	44	1.76
38005830--38005883	22	2.5	22	78	3	65	25	20	16	37	1.93
38005888--38006033	62	2.3	63	76	2	161	28	21	14	36	1.92
38007940--38008000	11	5.5	11	82	5	70	22	27	3	45	1.68
38008017--38008053	11	3.2	12	92	7	60	27	16	5	51	1.66
38009207--38009232	7	3.7	7	100	0	52	26	0	15	57	1.38
38010404--38010443	7	5.9	7	85	14	57	47	0	0	52	1.00
38010473--38010689	21	10.4	21	91	3	357	43	30	0	24	1.58
38010473--38010689	41	5.2	42	91	3	357	43	30	0	24	1.58
38010473--38010689	62	3.5	62	94	3	355	43	30	0	24	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38010476--38010720	21	11.1	25	80	15	141	44	29	0	25	1.60
38010665--38010724	15	4.2	15	76	20	74	45	30	1	23	1.63
38010780--38010973	102	1.9	102	94	0	343	44	8	7	39	1.63
38010890--38010940	16	2.8	19	67	27	56	50	11	0	37	1.39
38013982--38014422	125	3.5	123	93	1	711	29	21	17	32	1.96
38014554--38014594	21	1.9	22	85	5	57	51	31	0	17	1.46
38015662--38015703	9	4.7	9	80	11	50	52	2	2	42	1.27
38016888--38017138	20	12.6	21	74	14	151	21	17	5	56	1.60
38016875--38017138	120	2.2	119	83	4	309	20	16	4	57	1.57
38017054--38017126	38	1.9	37	88	2	110	21	13	8	56	1.64
38016932--38017143	58	3.6	57	74	11	180	22	15	5	57	1.57
38017115--38017174	30	2.1	30	87	12	90	18	11	5	65	1.43
38017077--38017207	68	1.9	67	81	7	158	19	15	7	57	1.62
38017871--38017923	20	2.6	20	76	8	54	20	18	9	50	1.74
38020928--38020973	16	2.9	15	87	6	56	54	8	4	32	1.51
38027324--38027536	110	1.9	111	81	4	261	40	5	10	42	1.63
38027540--38027695	84	1.9	84	100	0	312	39	14	9	35	1.79
38039780--38039830	22	2.3	22	83	6	59	64	1	7	25	1.31
38040774--38040860	21	4.3	20	72	17	56	57	2	32	8	1.40
38046945--38047001	21	2.7	21	78	10	62	47	14	3	35	1.61
38046956--38047357	160	2.6	153	85	6	524	41	10	4	43	1.60
38047238--38047667	107	4.0	107	96	2	767	40	12	3	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38048558--38048694	42	3.3	42	88	2	195	39	21	17	21	1.92
38059138--38059164	13	2.1	13	100	0	54	14	33	22	29	1.94
38064521--38064655	50	2.7	50	78	4	146	25	20	30	22	1.99
38064919--38064957	20	2.0	20	90	10	62	56	5	23	15	1.59
38066509--38066533	12	2.1	12	100	0	50	16	32	0	52	1.44
38066750--38066812	27	2.3	26	75	20	67	42	3	0	53	1.16
38066639--38067052	156	2.6	158	86	7	558	42	9	4	43	1.57
38066956--38067165	112	1.9	113	88	3	325	39	12	8	40	1.72
38073106--38073165	9	6.4	9	75	7	57	35	3	40	21	1.70
38077496--38078319	275	3.0	275	99	0	1603	31	15	20	33	1.93
38082202--38082294	19	5.1	19	72	12	86	46	12	10	30	1.76
38082199--38082317	54	2.2	54	93	0	211	44	13	10	31	1.78
38083215--38083277	18	3.4	18	78	17	58	6	19	0	74	1.02
38085396--38085426	11	2.8	11	95	0	53	22	0	3	74	0.96
38086717--38086755	19	2.1	19	95	0	69	51	10	10	28	1.68
38093256--38093439	50	3.7	50	81	6	205	23	26	22	27	2.00
38095192--38095611	209	2.0	210	91	1	691	32	17	21	28	1.96
38095931--38095956	12	2.2	12	100	0	52	69	7	0	23	1.14
38096764--38096881	62	1.9	61	82	1	146	35	8	5	50	1.57
38099159--38099196	14	2.7	14	88	8	51	36	2	0	60	1.11
38115358--38115397	21	1.9	21	85	10	55	30	12	2	55	1.50
38115790--38115860	35	2.0	35	94	0	124	35	22	5	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38116472--38116794	146	2.2	143	82	8	379	43	4	10	41	1.58
38129999--38130345	42	8.3	42	85	0	433	20	17	24	38	1.93
38131144--38131433	148	1.9	151	85	6	403	40	4	10	44	1.59
38131406--38131465	20	2.9	21	74	20	63	45	1	10	43	1.47
38147693--38147805	45	2.5	45	85	0	136	23	21	11	43	1.85
38155538--38155587	18	2.7	18	80	20	59	44	12	6	38	1.66
38157936--38158005	23	3.1	23	68	12	72	47	20	8	24	1.78
38157916--38158005	45	2.0	45	89	4	137	47	20	8	23	1.77
38158847--38158963	41	2.9	41	90	1	191	32	27	20	19	1.97
38165336--38166802	69	21.3	69	96	0	2448	45	19	9	24	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186