genome.fa.s20.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  146  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48218802--48219120	98	3.3	96	79	9	305	28	18	29	23	1.98
48218793--48219071	142	2.0	144	85	5	388	27	18	29	24	1.98
48221278--48221449	93	1.8	93	95	2	310	28	29	20	20	1.98
48221271--48221446	46	3.8	46	79	14	209	29	29	20	20	1.98
48228857--48229028	93	1.8	93	96	0	317	27	29	21	20	1.98
48228850--48229025	46	3.8	46	79	12	216	28	29	21	20	1.98
48236427--48236598	93	1.8	93	96	0	317	27	29	21	20	1.98
48236420--48236595	46	3.8	46	79	12	216	28	29	21	20	1.98
48249118--48249227	26	4.2	26	89	0	166	34	6	23	35	1.80
48253747--48253851	52	2.0	52	98	0	201	33	22	16	27	1.95
48255266--48255326	28	2.2	28	87	0	95	36	9	24	29	1.88
48262386--48262500	55	2.1	56	83	8	146	34	21	24	19	1.96
48262411--48262500	27	3.2	27	85	7	119	32	23	24	20	1.98
48262606--48262670	28	2.3	28	94	0	112	30	7	27	33	1.85
48262917--48262948	8	4.0	8	91	0	55	3	25	25	46	1.67
48268972--48269156	40	4.7	40	82	7	209	23	22	28	25	1.99
48269025--48269189	79	2.1	79	83	6	201	25	20	28	25	1.99
48286243--48286466	46	4.8	44	76	15	175	28	17	29	24	1.97
48286245--48286416	93	1.8	93	98	0	335	27	17	29	25	1.97
48286250--48286513	50	5.5	49	81	5	242	29	17	29	24	1.97
48286250--48286513	93	2.8	93	86	5	323	29	17	29	24	1.97
48298881--48298911	15	2.1	15	100	0	62	35	25	6	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48299343--48299592	46	5.3	48	75	13	218	22	29	19	28	1.98
48299341--48299608	94	2.9	93	78	10	271	22	30	19	27	1.98
48307318--48307462	40	3.6	40	85	4	193	25	24	26	23	2.00
48313295--48313338	11	3.8	11	80	11	52	31	0	4	63	1.14
48315295--48315438	35	4.2	35	69	10	98	30	14	23	31	1.94
48315242--48315483	103	2.4	101	88	2	376	31	16	23	28	1.96
48320811--48320925	20	5.8	20	93	2	196	33	20	11	35	1.88
48320816--48320931	9	11.7	10	74	17	86	33	19	11	35	1.88
48325101--48325244	72	2.0	72	98	0	279	36	22	17	23	1.94
48333691--48333755	30	2.2	30	85	0	94	32	6	18	43	1.75
48333894--48333966	22	3.1	23	80	13	78	60	1	5	32	1.28
48337758--48337795	16	2.4	16	95	0	67	34	5	21	39	1.76
48340989--48341491	251	2.0	251	100	0	1006	33	22	10	33	1.88
48342897--48343027	49	2.7	49	83	2	165	20	28	22	29	1.98
48342857--48343050	98	2.0	97	79	7	205	23	28	21	26	1.99
48343036--48343210	46	3.7	46	74	7	140	24	28	18	28	1.98
48343090--48343210	46	2.6	46	84	2	154	25	28	16	28	1.97
48345505--48345570	32	2.1	32	100	0	132	27	24	9	39	1.85
48346262--48346310	17	2.8	19	75	25	54	32	0	0	67	0.91
48346262--48346317	18	3.2	18	80	14	64	32	1	0	66	1.03
48346448--48346486	21	1.9	20	84	5	51	30	0	7	61	1.24
48357691--48357866	46	3.8	45	81	10	212	21	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48357688--48357858	93	1.8	93	94	0	306	21	21	29	27	1.98
48360857--48360921	31	2.3	27	80	15	76	38	6	12	43	1.67
48362502--48362550	21	2.4	20	77	12	55	40	0	0	59	0.98
48365144--48365280	47	2.8	49	83	6	190	24	17	25	32	1.97
48366191--48366241	16	3.2	16	88	0	66	45	9	19	25	1.81
48369478--48369529	22	2.4	22	93	0	86	28	19	17	34	1.94
48370971--48371031	25	2.5	24	75	17	63	19	22	26	31	1.98
48381720--48381991	47	5.7	48	72	15	208	25	29	17	27	1.97
48382184--48382248	33	2.0	33	100	0	130	24	26	18	30	1.98
48397485--48397575	46	2.0	46	100	0	182	9	21	2	65	1.33
48405076--48405314	85	2.8	84	88	2	361	29	15	24	30	1.95
48407736--48407850	45	2.6	45	83	2	124	24	20	10	45	1.82
48409456--48409514	27	2.2	27	87	6	84	30	30	10	28	1.90
48410400--48410449	3	16.7	3	100	0	100	34	0	0	66	0.92
48412227--48412266	15	2.7	15	85	14	57	32	7	0	60	1.25
48416605--48416775	94	1.8	92	87	5	254	29	19	28	22	1.98
48416601--48416865	46	5.8	44	72	13	180	27	20	28	23	1.99
48416791--48416902	44	2.5	45	85	5	138	24	18	31	25	1.98
48419212--48419281	36	1.9	36	97	0	131	52	10	10	27	1.66
48421472--48421517	18	2.6	18	92	0	74	19	32	30	17	1.95
48427319--48427420	42	2.4	42	88	3	152	30	21	15	32	1.95
48427257--48427420	85	1.9	84	80	6	188	29	22	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48433775--48433828	26	2.1	26	100	0	108	29	20	11	38	1.87
48434787--48434833	22	2.2	21	85	7	60	46	6	4	42	1.48
48436892--48436925	10	3.4	10	83	0	50	14	8	26	50	1.72
48441374--48441419	22	2.0	24	87	8	69	47	17	0	34	1.48
48443953--48444324	95	3.9	95	81	2	365	37	18	15	27	1.92
48444073--48444398	95	3.4	95	82	0	321	38	19	14	27	1.90
48453686--48453860	63	2.8	62	81	6	201	26	26	20	26	1.99
48454372--48454416	23	2.0	23	82	8	56	75	2	15	6	1.11
48456213--48456381	43	3.9	41	79	4	142	27	28	18	24	1.98
48456213--48456380	86	2.0	86	84	7	225	27	29	18	24	1.98
48456397--48456422	10	2.6	10	100	0	52	65	0	0	34	0.93
48456915--48456965	25	2.0	25	96	0	93	52	21	3	21	1.62
48460848--48460882	3	11.7	3	100	0	70	31	0	0	68	0.90
48461466--48461549	42	2.0	43	82	15	104	40	34	1	23	1.63
48461671--48461695	10	2.5	10	100	0	50	64	0	0	36	0.94
48464007--48464309	40	7.6	40	87	4	344	26	27	21	25	1.99
48464241--48464318	40	1.9	41	82	10	97	26	28	20	24	1.99
48470019--48470202	92	2.0	92	98	0	359	32	22	26	19	1.97
48470457--48470857	200	2.0	200	99	0	784	29	24	18	27	1.98
48478065--48478223	40	4.0	40	95	0	282	23	22	27	27	1.99
48478196--48478247	26	2.0	26	92	0	86	23	21	30	25	1.99
48480375--48480404	14	2.1	14	93	0	51	20	6	10	63	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48486370--48486408	20	2.0	20	89	0	60	15	5	2	76	1.06
48486795--48486930	68	2.0	68	98	0	263	27	18	11	42	1.85
48488542--48488566	13	1.9	13	100	0	50	16	32	36	16	1.90
48489373--48489398	13	2.0	13	100	0	52	30	0	15	53	1.42
48490318--48490349	16	2.0	16	93	0	55	46	21	6	25	1.74
48491268--48491308	18	2.3	18	100	0	82	39	12	4	43	1.63
48492158--48492240	27	3.3	27	69	22	88	20	20	12	46	1.82
48492154--48492252	49	2.0	49	96	0	180	19	21	13	46	1.83
48499328--48499602	46	5.9	47	77	11	219	28	18	30	22	1.97
48501411--48501549	35	4.0	35	84	0	170	35	22	12	29	1.91
48506669--48506725	20	2.9	19	82	12	71	56	1	3	38	1.27
48506614--48506749	68	2.0	70	85	2	186	52	5	2	40	1.36
48511674--48511741	30	2.3	30	89	0	100	19	36	25	19	1.94
48512584--48512901	48	6.9	48	77	12	317	27	27	16	28	1.97
48512532--48512901	96	3.9	96	83	8	474	26	27	17	28	1.98
48512691--48512862	86	2.0	86	95	0	308	27	28	16	26	1.97
48515640--48515674	17	2.0	18	94	5	63	57	11	5	25	1.56
48519486--48519669	97	1.9	97	100	0	368	27	9	9	53	1.64
48520432--48520473	14	3.1	14	77	16	52	50	0	4	45	1.23
48527763--48527794	12	2.7	12	100	0	64	0	34	34	31	1.58
48538812--48539350	40	13.5	40	85	3	593	40	26	18	14	1.89
48543022--48543160	51	2.7	51	81	8	142	28	26	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48545936--48546008	15	4.9	15	76	3	58	57	16	10	15	1.65
48549490--48549678	50	3.7	50	80	2	189	31	24	17	26	1.97
48549545--48549674	52	2.6	50	83	2	152	33	26	13	25	1.94
48550017--48550073	25	2.2	26	78	9	64	33	17	1	47	1.58
48557258--48557289	17	2.0	17	88	11	50	37	9	12	40	1.75
48565345--48565414	34	2.1	34	94	0	122	34	24	8	32	1.86
48573857--48574020	43	3.8	43	73	12	140	32	26	15	24	1.95
48576967--48577089	46	2.7	46	82	11	146	26	20	30	21	1.98
48590899--48590929	12	2.7	11	90	9	53	29	0	0	70	0.87
48591093--48591125	11	2.9	12	86	13	52	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186