genome.fa.s20.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  81  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26306502--26306526	13	1.9	13	100	0	50	56	4	0	40	1.18
26309782--26309846	28	2.3	28	86	0	94	36	7	24	30	1.84
26315432--26315506	28	2.7	28	87	0	105	34	13	22	29	1.92
26316522--26316603	41	2.0	41	97	0	155	32	14	14	37	1.87
26320201--26320248	20	2.4	20	89	0	69	12	37	18	31	1.88
26320318--26320358	13	3.2	13	96	0	73	19	39	24	17	1.92
26323408--26323465	30	1.9	30	86	6	82	60	1	3	34	1.24
26326507--26326660	41	3.7	40	75	10	141	29	16	26	27	1.97
26331286--26331329	21	2.1	21	100	0	88	25	11	22	40	1.87
26333259--26333400	40	3.6	40	93	2	225	22	28	23	26	1.99
26340215--26340309	42	2.3	41	83	10	113	31	14	25	28	1.95
26345697--26345818	50	2.5	49	82	5	142	27	22	15	35	1.94
26347756--26347815	30	2.0	30	83	6	77	28	25	8	38	1.84
26349947--26350019	27	2.7	28	80	6	78	42	24	19	13	1.87
26352390--26352561	46	3.7	47	79	10	160	28	22	29	20	1.98
26353814--26353933	43	2.8	42	75	13	120	25	20	25	28	1.99
26361173--26361310	43	3.2	42	73	15	122	26	21	24	26	1.99
26361162--26361318	85	1.8	85	83	5	210	26	21	26	26	1.99
26363352--26363377	13	2.0	13	100	0	52	38	23	38	0	1.55
26380286--26380395	42	2.7	40	84	8	150	24	20	22	31	1.98
26380286--26380438	40	3.8	40	82	8	161	24	20	23	31	1.98
26384705--26384799	46	2.0	47	93	2	165	34	11	18	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26388127--26388297	42	4.1	42	93	3	274	23	21	24	30	1.98
26403002--26403039	12	2.9	14	76	15	53	10	5	2	81	0.94
26411365--26411586	46	4.7	46	78	11	184	30	16	30	22	1.96
26411328--26411688	140	2.5	142	82	6	401	28	17	30	23	1.97
26411417--26411689	46	5.8	48	74	15	196	26	17	31	24	1.97
26411464--26411689	96	2.4	98	82	11	276	26	18	31	23	1.97
26414554--26414599	9	5.2	9	75	15	51	34	0	0	65	0.93
26414555--26414634	18	4.4	18	75	16	58	33	1	1	63	1.10
26414547--26414634	47	1.9	45	86	9	124	35	1	1	62	1.10
26414538--26414630	27	3.3	27	76	13	80	38	1	1	59	1.12
26414577--26414627	19	2.8	17	77	16	57	31	1	1	64	1.15
26417346--26417424	39	2.0	39	100	0	158	15	12	22	49	1.78
26421263--26421318	20	2.7	20	76	15	60	67	0	10	21	1.20
26423576--26423663	27	3.3	26	78	13	90	39	19	22	18	1.92
26423588--26423680	27	3.4	27	82	7	107	36	23	23	16	1.94
26431377--26431488	27	4.2	26	77	7	107	38	20	24	16	1.93
26431379--26431485	54	2.0	54	85	3	144	39	18	24	17	1.92
26435505--26435547	22	2.0	22	85	0	59	67	2	23	6	1.27
26439553--26439615	28	2.3	26	84	10	74	17	25	22	34	1.95
26440358--26440693	163	2.1	163	98	0	654	36	5	17	40	1.73
26447273--26447346	35	2.1	35	92	0	121	32	14	24	28	1.95
26449571--26449637	28	2.5	27	80	11	75	17	23	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26466044--26466215	47	3.7	48	78	10	169	29	20	27	22	1.98
26470712--26470741	12	2.5	12	100	0	60	26	26	40	6	1.81
26472031--26472194	42	3.9	42	79	7	170	29	26	15	27	1.96
26472033--26472189	85	1.9	84	83	4	208	28	26	16	28	1.97
26477435--26477618	40	4.6	39	80	9	194	25	22	27	24	2.00
26477487--26477651	79	2.1	79	83	6	201	26	21	27	24	1.99
26486582--26486745	43	3.9	41	77	9	134	32	25	15	26	1.96
26490484--26490537	28	1.9	28	88	0	81	25	16	12	44	1.84
26493006--26493411	55	7.6	54	78	8	422	23	24	16	35	1.95
26493006--26493403	108	3.8	108	88	4	528	23	24	17	35	1.95
26493289--26493447	47	3.2	47	72	14	167	27	23	13	35	1.92
26493234--26493447	101	2.1	101	95	0	383	26	23	14	35	1.93
26493234--26493496	101	2.7	96	87	6	282	24	23	14	36	1.93
26493599--26493685	44	2.0	44	84	4	113	24	26	12	36	1.91
26497990--26498077	5	16.6	5	73	19	65	76	2	3	18	1.04
26498000--26498063	16	3.8	17	82	13	78	76	1	4	17	1.03
26497990--26498077	11	7.7	11	75	16	74	76	2	3	18	1.04
26513894--26514110	40	5.5	40	87	3	280	24	22	27	25	2.00
26513890--26514110	119	1.9	119	85	5	313	25	21	27	25	2.00
26518304--26518458	77	2.0	78	97	1	294	45	14	10	29	1.78
26523731--26523765	13	2.7	13	95	0	61	17	34	34	14	1.90
26529201--26529234	14	2.3	15	95	5	61	14	0	2	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26548890--26548999	43	2.6	43	82	1	132	29	25	19	26	1.98
26556765--26557112	40	8.7	40	98	0	669	30	20	27	21	1.98
26560169--26560567	47	8.4	47	93	2	654	29	29	8	31	1.87
26560169--26560567	143	2.8	141	93	1	654	29	29	8	31	1.87
26563274--26563308	14	2.5	14	95	0	61	17	20	28	34	1.95
26567931--26567989	22	2.7	22	81	0	73	33	20	22	23	1.97
26568451--26568526	27	2.8	27	83	0	80	26	18	19	35	1.95
26568480--26568619	27	5.2	27	81	5	99	32	10	17	40	1.84
26568491--26568671	54	3.4	55	78	7	167	31	9	19	39	1.84
26568491--26568671	27	6.7	27	78	2	96	31	9	19	39	1.84
26568492--26568671	81	2.2	82	79	4	204	31	8	20	39	1.83
26568655--26568708	26	2.1	26	85	0	72	31	22	18	27	1.97
26572315--26572499	79	2.3	81	83	7	227	24	22	27	24	2.00
26572316--26572499	40	4.6	40	82	9	207	25	22	27	24	2.00
26572316--26572532	79	2.7	79	80	7	192	26	22	27	23	1.99
26580806--26580983	27	6.6	27	83	3	205	26	15	28	29	1.96
26580807--26580962	82	1.9	81	88	3	233	26	15	28	29	1.96
26580803--26580983	82	2.2	81	83	2	229	27	15	27	29	1.96
26588748--26589010	40	6.7	40	89	5	351	25	22	27	25	2.00
26588749--26589043	79	3.7	77	82	9	296	26	21	27	24	1.99
26595588--26596520	40	23.3	40	98	0	1798	24	19	27	27	1.99
26603500--26603614	29	4.0	29	85	2	144	26	15	29	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26603508--26603623	57	2.0	57	86	3	162	25	16	31	27	1.96
26616270--26616444	49	3.5	49	83	3	215	28	18	24	29	1.98
26616265--26616452	100	1.9	100	92	0	313	27	19	23	28	1.99
26619152--26619319	40	4.2	40	82	8	148	27	27	20	24	1.99
26619187--26619372	80	2.3	80	83	9	229	27	27	20	23	1.99
26619189--26619372	40	4.6	40	83	7	205	27	27	21	23	1.99
26626571--26626711	72	2.0	71	84	4	185	42	13	32	11	1.80
26630794--26630883	29	3.1	28	83	1	99	30	14	27	27	1.95
26630806--26630900	29	3.3	29	83	0	100	28	15	28	27	1.96
26630852--26630917	29	2.3	29	83	0	78	34	7	28	28	1.85
26642675--26642718	21	2.1	21	100	0	88	13	36	9	40	1.76
26642824--26642998	46	3.8	46	79	10	212	28	27	20	23	1.99
26642832--26643000	93	1.8	93	93	0	293	28	27	20	23	1.99
26642827--26643018	46	4.2	46	71	17	148	28	27	19	23	1.99
26645774--26645802	15	1.9	15	100	0	58	48	6	17	27	1.72
26657020--26657072	3	17.7	3	96	0	97	32	1	0	66	1.03
26657159--26657218	30	2.0	30	96	0	111	28	16	11	43	1.83
26659083--26659144	26	2.3	27	81	10	74	35	27	11	25	1.90
26659249--26659358	27	4.0	27	77	8	107	21	19	20	39	1.93
26659714--26659768	28	2.0	28	85	0	74	23	20	36	20	1.95
26663367--26663430	26	2.4	27	82	10	78	35	26	12	25	1.91
26663533--26663589	28	2.0	28	100	0	114	17	21	24	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26663539--26663612	28	2.7	28	87	4	98	21	22	20	35	1.96
26668576--26668713	48	2.9	48	82	5	179	23	31	18	26	1.98
26668544--26668723	48	3.7	47	77	12	168	24	29	18	27	1.98
26668881--26668914	17	2.0	17	88	0	50	47	23	0	29	1.52
26677881--26677908	12	2.3	12	100	0	56	64	14	0	21	1.29
26680184--26680361	27	6.6	27	84	3	205	29	28	15	26	1.96
26680205--26680360	82	1.9	81	88	3	233	29	28	15	26	1.96
26688374--26688551	27	6.6	27	84	3	205	29	28	15	26	1.96
26688395--26688550	82	1.9	81	88	3	233	29	28	15	26	1.96
26696638--26696682	23	1.9	24	82	13	58	35	6	22	35	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186