genome.fa.s20.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  124  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41129173--41129221	26	2.0	26	88	8	75	30	0	6	63	1.19
41129600--41129738	24	6.0	23	73	9	95	38	18	20	23	1.94
41134300--41134369	27	2.6	27	95	2	113	31	28	12	27	1.93
41134300--41134397	28	3.5	28	90	2	135	31	28	13	26	1.94
41138761--41139387	314	2.0	314	97	0	1173	27	25	17	28	1.98
41142257--41142329	27	2.8	25	76	15	76	31	12	9	46	1.74
41146574--41146892	50	6.6	49	77	9	275	23	27	19	28	1.98
41146574--41146900	145	2.3	146	84	8	429	23	28	19	28	1.98
41148869--41148910	22	2.1	19	86	13	57	45	2	0	52	1.13
41150711--41151132	37	11.4	37	99	0	835	27	32	18	21	1.97
41151140--41151520	48	7.9	48	96	0	672	31	24	6	37	1.80
41155395--41155544	40	3.7	40	85	1	201	26	28	20	25	1.99
41155545--41155820	138	2.0	138	100	0	552	39	23	6	31	1.80
41158400--41158650	47	5.4	47	87	2	328	31	9	32	26	1.89
41158781--41158860	37	2.2	37	86	4	108	23	17	31	27	1.97
41160465--41160666	48	4.2	48	94	0	332	32	25	5	36	1.80
41163707--41163790	25	3.4	25	90	6	127	27	23	20	28	1.99
41163825--41163905	20	4.1	20	91	3	128	30	18	9	40	1.83
41164706--41164883	27	6.6	27	75	5	130	30	9	20	38	1.85
41164919--41165112	27	7.2	27	87	1	255	39	6	24	29	1.80
41164919--41165112	81	2.4	81	88	1	282	39	6	24	29	1.80
41166471--41166573	37	2.8	37	89	5	156	25	18	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41166545--41166883	42	7.7	42	75	14	242	28	16	25	29	1.97
41166568--41166754	48	3.9	48	90	2	288	31	17	24	27	1.97
41170404--41170479	40	1.9	40	86	0	107	21	17	28	32	1.95
41173282--41173443	27	6.0	27	76	5	148	32	12	20	35	1.90
41173282--41173441	54	3.0	54	78	9	173	32	12	19	35	1.89
41177649--41177694	20	2.3	20	80	0	56	23	13	32	30	1.93
41179365--41179470	48	2.2	48	85	9	137	14	24	1	59	1.45
41182081--41182127	20	2.3	20	85	0	67	21	12	36	29	1.91
41192328--41192525	27	7.3	27	87	2	263	28	24	7	39	1.82
41192328--41192525	81	2.4	81	90	1	299	28	24	7	39	1.82
41192529--41192656	27	4.7	27	74	5	89	39	20	10	29	1.85
41192515--41192655	54	2.6	54	79	7	137	36	20	11	31	1.88
41192557--41192669	27	4.2	27	77	4	102	42	19	7	30	1.78
41192566--41192758	54	3.5	54	75	8	183	40	17	9	32	1.81
41192610--41192737	27	4.7	27	75	12	93	43	18	6	31	1.75
41192784--41192857	27	2.7	27	76	12	71	37	20	20	21	1.94
41192797--41192861	27	2.4	27	82	5	78	35	18	24	21	1.96
41193672--41193754	25	3.4	24	81	8	87	28	20	22	27	1.99
41193889--41193980	42	2.2	42	92	0	148	32	14	20	32	1.92
41194004--41194087	31	2.7	31	94	1	143	28	17	26	27	1.98
41209984--41210124	42	3.2	41	75	16	113	26	15	26	30	1.96
41210001--41210098	48	2.1	47	86	5	135	27	16	28	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41210053--41210155	42	2.5	42	77	6	118	23	15	28	33	1.95
41210331--41210413	41	2.0	41	95	0	148	38	7	19	34	1.79
41215176--41215268	37	2.6	36	79	3	123	25	18	29	26	1.98
41215257--41215501	42	5.7	42	75	11	194	26	14	27	31	1.95
41215254--41215419	90	1.8	90	84	2	226	25	15	28	30	1.95
41215613--41215695	41	2.0	41	92	0	139	38	8	19	33	1.82
41217448--41217530	28	3.0	28	80	7	96	31	12	26	30	1.92
41235819--41235871	27	2.0	27	85	7	72	16	26	37	18	1.93
41235975--41236130	27	5.8	27	82	3	170	32	16	15	35	1.90
41236124--41236191	26	2.6	26	90	2	109	41	19	19	20	1.91
41236267--41236312	23	2.0	23	84	16	60	26	10	21	41	1.86
41237530--41237795	94	2.8	94	78	12	251	26	18	30	24	1.98
41245158--41245477	49	6.8	46	72	13	235	26	19	30	23	1.98
41250326--41250421	42	2.3	42	96	0	174	33	6	30	30	1.82
41254795--41254827	14	2.3	15	89	5	50	39	0	39	21	1.53
41257800--41258037	39	6.1	38	81	5	244	19	33	16	30	1.94
41262781--41262955	46	3.8	46	76	13	144	26	16	30	25	1.97
41282907--41283453	49	11.3	49	95	1	930	32	8	29	29	1.87
41286027--41286075	25	2.0	25	91	0	80	34	24	14	26	1.94
41286117--41286144	10	2.8	10	100	0	56	32	17	17	32	1.94
41287182--41287215	17	1.9	17	88	5	50	14	44	29	11	1.81
41316726--41316762	18	2.1	18	94	0	65	18	32	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41318946--41318980	17	2.0	18	88	5	54	60	20	8	11	1.57
41341316--41341534	110	2.0	110	98	0	420	35	22	10	31	1.89
41345870--41345978	37	2.9	37	94	0	182	25	32	19	22	1.97
41346119--41347324	48	25.0	48	97	0	2169	31	27	7	33	1.84
41349648--41349744	42	2.3	41	82	8	113	24	18	24	31	1.97
41349648--41349783	43	3.2	41	79	11	123	27	18	22	31	1.97
41349662--41349752	42	2.1	43	85	4	121	25	16	24	34	1.95
41350065--41350089	8	3.1	8	100	0	50	28	0	12	60	1.32
41351275--41351359	43	2.0	42	82	11	102	35	16	18	29	1.93
41358161--41358214	17	3.2	17	97	0	99	38	27	14	18	1.90
41370789--41370960	47	3.7	47	89	6	244	21	19	29	29	1.98
41371236--41371273	19	2.0	20	85	15	53	36	0	23	39	1.55
41376218--41376271	29	2.0	26	89	10	81	61	16	12	9	1.56
41376221--41376299	15	5.4	15	77	10	83	59	12	16	11	1.61
41386048--41386127	15	5.4	15	79	7	74	58	12	16	12	1.63
41388599--41388770	40	4.3	40	93	2	276	24	27	22	25	2.00
41396529--41396706	40	4.5	40	89	2	252	24	27	22	25	2.00
41400313--41400484	93	1.8	93	92	0	290	28	29	20	20	1.98
41400314--41400481	46	3.6	45	79	13	189	29	29	20	20	1.98
41407152--41407794	47	13.7	47	100	0	1286	23	19	29	27	1.98
41407840--41408015	46	3.8	46	76	7	185	21	21	28	28	1.98
41407837--41408007	93	1.8	93	92	0	288	21	21	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41415388--41415421	18	1.9	18	88	5	52	29	14	14	41	1.86
41419028--41419090	28	2.2	29	88	2	101	28	31	14	25	1.95
41419305--41419347	16	2.6	18	82	17	58	11	18	18	51	1.76
41429042--41429120	37	2.1	37	88	4	115	24	32	18	24	1.97
41429239--41429557	47	6.8	47	94	0	548	29	30	8	31	1.87
41431550--41431669	56	2.1	56	96	0	222	23	23	9	44	1.82
41432320--41432410	44	2.1	44	93	0	155	39	4	16	39	1.69
41435269--41435527	46	5.5	47	69	18	164	28	17	29	23	1.97
41436371--41436454	42	2.0	42	92	0	141	14	25	35	25	1.93
41446582--41446681	46	2.2	44	85	7	139	27	17	31	25	1.97
41457989--41458103	43	2.7	43	77	10	119	32	26	19	22	1.97
41464929--41464981	25	2.2	25	83	12	67	43	24	0	32	1.55
41466787--41466997	50	4.2	50	78	4	201	30	12	17	39	1.86
41466809--41466997	100	1.9	100	84	2	254	30	11	17	40	1.85
41469140--41469378	64	3.6	65	83	6	209	24	28	15	31	1.95
41469200--41469343	64	2.2	64	92	0	234	27	29	14	29	1.95
41469876--41469932	29	2.0	29	86	6	80	29	24	7	38	1.82
41471695--41471782	42	2.0	43	80	8	99	34	27	17	21	1.95
41474053--41474088	17	2.1	17	89	0	54	69	0	13	16	1.19
41476214--41476343	47	2.8	47	85	0	161	22	14	29	33	1.94
41476211--41476362	47	3.2	48	72	15	129	23	14	26	34	1.94
41477301--41477342	21	2.0	21	86	9	59	35	21	7	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41480039--41480110	37	1.9	37	94	5	128	31	23	11	33	1.90
41488509--41488751	49	4.9	50	77	4	224	26	19	25	28	1.99
41494250--41494352	42	2.4	43	79	6	120	30	18	17	33	1.94
41501609--41501705	38	2.6	38	88	0	131	22	25	25	25	2.00
41501621--41501716	38	2.5	38	84	0	111	23	21	26	28	1.99
41501709--41501820	43	2.6	43	97	0	206	9	25	33	31	1.88
41505381--41505654	49	5.5	49	90	1	386	29	27	18	24	1.98
41507794--41507862	30	2.3	30	82	7	88	57	18	15	7	1.61
41507794--41507862	15	4.7	15	82	8	79	57	18	15	7	1.61
41513091--41513164	29	2.6	29	89	4	105	25	16	32	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186