genome.fa.s20.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  93  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30360980--30361072	40	2.3	40	83	3	107	26	21	23	27	1.99
30361140--30361240	40	2.5	40	85	0	139	30	24	18	25	1.98
30360980--30361509	155	3.4	154	85	1	675	30	19	21	28	1.98
30361297--30361391	39	2.4	40	85	3	129	29	18	21	30	1.97
30361743--30361796	14	3.9	14	75	4	56	25	1	25	46	1.63
30361840--30361883	14	3.1	14	80	0	52	18	0	29	52	1.46
30361842--30361882	21	2.0	21	90	0	64	19	0	24	56	1.42
30362950--30362987	19	2.0	19	89	0	58	65	2	0	31	1.06
30362926--30362985	31	1.9	31	83	6	77	63	5	0	31	1.16
30365085--30365129	23	2.0	23	91	4	74	13	4	53	28	1.59
30368930--30368975	22	2.1	22	95	0	83	34	8	6	50	1.59
30370484--30370515	14	2.3	14	94	0	55	46	15	0	37	1.46
30382045--30382098	27	2.0	27	100	0	108	29	7	40	22	1.81
30387008--30387088	28	2.9	27	76	7	81	60	3	4	30	1.35
30397398--30397436	21	1.9	21	94	5	71	61	25	0	12	1.31
30397916--30397977	28	2.1	29	85	5	81	33	3	1	61	1.22
30399889--30399921	17	2.1	16	88	11	50	51	6	3	39	1.42
30402230--30402278	25	2.0	25	88	8	73	6	8	10	75	1.18
30409182--30409540	46	7.7	46	76	15	364	22	20	27	28	1.99
30409228--30409489	47	5.6	47	77	15	310	23	19	27	29	1.98
30409179--30409535	93	3.8	93	98	0	687	22	20	28	28	1.99
30410386--30410439	27	2.0	27	100	0	108	33	11	3	51	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30411371--30411480	57	1.9	57	86	0	157	32	12	20	33	1.91
30427043--30427137	46	2.1	46	95	0	172	20	22	26	31	1.98
30432213--30432264	20	2.6	20	90	0	86	28	28	26	15	1.96
30436469--30436584	20	5.8	20	72	9	85	11	27	18	42	1.85
30456889--30456922	10	3.4	10	83	0	50	0	2	11	85	0.71
30459342--30459370	11	2.6	11	100	0	58	27	0	62	10	1.28
30464063--30464103	20	2.0	20	100	0	82	43	9	21	24	1.83
30464103--30464235	53	2.5	53	100	0	266	21	18	27	31	1.97
30481435--30481493	17	3.3	17	68	13	55	15	15	15	54	1.72
30482891--30482920	14	2.1	14	93	0	51	30	0	16	53	1.44
30486014--30486047	16	2.1	16	100	0	68	41	17	17	23	1.90
30487616--30487655	20	2.0	20	100	0	80	20	30	15	35	1.93
30498951--30499058	46	2.4	44	84	10	139	24	30	17	27	1.97
30498989--30499159	46	3.7	46	76	14	140	22	26	19	30	1.98
30500699--30500742	19	2.4	18	88	7	70	45	11	2	40	1.53
30501825--30501850	13	2.0	13	100	0	52	30	23	15	30	1.95
30502148--30502275	45	2.8	46	77	9	136	33	24	21	20	1.97
30503911--30503957	23	2.0	24	87	4	69	34	10	8	46	1.69
30505071--30505248	27	6.6	27	83	3	205	26	15	28	29	1.96
30505072--30505227	82	1.9	81	88	3	233	26	15	28	29	1.96
30505068--30505248	82	2.2	81	83	2	229	27	15	27	29	1.96
30522524--30522733	40	5.3	39	89	4	242	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30522471--30522733	120	2.2	120	82	4	309	25	21	27	25	1.99
30522472--30522768	80	3.7	80	81	6	230	26	21	27	24	1.99
30530475--30530684	40	5.3	39	89	4	242	25	21	27	25	1.99
30530422--30530684	120	2.2	120	82	4	309	25	21	27	25	1.99
30530423--30530719	80	3.7	80	81	6	230	26	21	27	24	1.99
30531690--30532254	282	2.0	282	96	0	1049	34	16	21	27	1.95
30550705--30550764	30	2.0	30	86	0	84	38	6	25	30	1.81
30555965--30556227	40	6.7	40	87	6	324	25	27	21	25	1.99
30555965--30556227	79	3.3	78	85	8	322	25	27	21	25	1.99
30559142--30559312	93	1.8	93	93	0	297	28	29	21	20	1.98
30559134--30559309	46	3.8	46	79	12	207	29	29	20	20	1.98
30571056--30571113	30	1.9	30	89	0	89	37	8	24	29	1.85
30572419--30572504	43	2.0	43	97	0	163	32	6	17	43	1.76
30578627--30578722	50	1.9	50	97	0	183	42	11	26	19	1.85
30580197--30581101	40	22.6	40	98	0	1733	24	24	25	24	2.00
30589244--30590113	40	21.8	40	99	0	1713	24	24	25	24	2.00
30592809--30593074	50	5.3	50	81	5	295	29	12	18	39	1.88
30596604--30596663	27	2.3	26	85	2	75	35	20	23	21	1.96
30601294--30601469	46	3.8	46	80	12	225	21	21	28	28	1.98
30601291--30601461	93	1.8	93	96	0	315	21	21	29	28	1.98
30604409--30604477	15	4.6	15	83	0	84	11	17	13	57	1.64
30604400--30604487	30	3.0	30	81	8	99	10	17	15	56	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30609555--30609666	43	2.6	43	84	4	138	25	18	25	29	1.98
30613651--30613761	58	1.9	58	87	7	163	50	3	19	26	1.64
30619836--30620000	46	3.5	47	78	12	155	25	27	17	29	1.98
30623355--30623617	40	6.6	39	86	4	278	25	27	21	25	1.99
30623355--30623617	120	2.2	119	82	4	307	25	27	21	25	1.99
30623549--30623626	40	1.9	41	82	10	97	26	28	20	24	1.99
30632970--30633069	46	2.2	45	82	7	114	25	30	17	28	1.97
30634918--30634964	17	2.8	17	73	20	53	19	8	10	61	1.53
30639118--30639169	26	2.0	27	96	3	97	34	7	9	48	1.65
30643131--30643272	42	3.4	40	78	10	133	33	17	21	28	1.96
30643132--30643286	85	1.8	84	83	6	206	33	16	20	29	1.94
30647707--30647812	32	3.3	32	85	6	133	44	8	8	38	1.65
30650597--30650643	13	3.8	13	77	5	53	63	0	2	34	1.06
30652239--30652274	18	1.9	18	94	5	63	5	16	16	61	1.53
30653468--30653501	16	2.0	18	88	11	54	47	11	0	41	1.40
30656120--30656196	34	2.2	35	93	2	129	44	20	6	28	1.76
30658839--30658897	29	2.0	29	100	0	118	30	6	20	42	1.78
30665545--30665710	40	4.2	40	91	0	269	22	22	29	25	1.99
30672252--30672364	40	2.8	39	87	1	154	23	24	28	23	2.00
30676292--30676598	47	6.6	46	69	14	200	23	29	20	26	1.99
30678807--30678960	28	5.5	28	92	1	238	33	27	12	26	1.92
30679407--30679433	12	2.2	12	100	0	54	40	0	7	51	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30690556--30690725	85	2.0	84	90	3	270	24	21	18	34	1.96
30698092--30698263	46	3.7	46	76	9	186	22	29	22	26	1.99
30704979--30705008	13	2.3	13	94	0	51	10	20	46	23	1.80
30712530--30712557	10	2.8	10	100	0	56	39	7	42	10	1.67
30716005--30716051	19	2.3	20	82	10	60	36	0	14	48	1.44
30716403--30716534	50	2.6	51	84	4	160	25	15	25	33	1.95
30717762--30717856	49	1.9	49	89	0	145	27	16	26	29	1.97
30723940--30724044	43	2.5	42	79	4	120	32	26	13	27	1.94
30727613--30727760	63	2.3	63	80	12	165	24	28	16	31	1.96
30744542--30744624	34	2.4	35	78	9	91	28	20	24	26	1.99
30780155--30780325	93	1.8	93	89	2	272	29	28	19	22	1.98
30780152--30780318	46	3.6	45	75	13	153	30	27	18	23	1.98
30788180--30788233	27	2.0	27	96	0	99	25	1	11	61	1.40
30799181--30799358	27	6.6	27	81	3	187	26	15	28	29	1.96
30799181--30799358	54	3.3	55	81	5	209	26	15	28	29	1.96
30799182--30799337	82	1.9	81	86	3	224	26	15	28	29	1.96
30799178--30799358	82	2.2	81	82	2	220	27	15	27	29	1.96
30802352--30802513	47	3.1	52	76	14	165	29	13	25	32	1.94
30802352--30802605	48	5.2	47	78	8	206	27	13	26	31	1.94
30808293--30808558	46	5.7	46	75	15	253	22	18	27	31	1.97
30808339--30808506	47	3.6	47	77	13	211	22	17	27	32	1.96
30808291--30808552	93	2.8	93	94	1	445	22	18	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30808783--30808820	19	2.0	20	85	15	53	36	0	23	39	1.55
30812713--30813699	40	24.7	40	97	0	1857	31	20	27	20	1.97
30819557--30819678	61	2.0	61	95	0	217	34	9	13	42	1.77
30823612--30823672	31	2.0	31	96	0	113	50	18	8	22	1.73
30824803--30824841	19	2.0	20	85	5	53	66	0	0	33	0.92
30831473--30831578	54	2.0	53	85	5	142	39	22	21	16	1.92
30831469--30831579	27	4.1	27	78	10	120	38	23	22	15	1.92
30832995--30833065	24	3.0	24	91	0	115	25	39	1	33	1.65
30837919--30838023	27	3.9	27	80	9	115	37	21	23	17	1.94
30839440--30839510	24	3.0	24	91	0	106	25	36	4	33	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186