genome.fa.s20.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  131  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43065865--43066197	48	6.9	48	80	4	296	24	26	17	31	1.97
43072881--43072918	18	2.1	18	100	0	76	47	10	15	26	1.78
43076311--43076366	24	2.2	24	81	12	60	14	14	3	67	1.35
43077974--43078018	22	2.1	21	91	4	72	11	0	11	77	0.99
43077986--43078033	22	2.2	22	85	7	62	12	4	8	75	1.18
43110618--43110712	50	1.9	50	100	0	190	30	21	26	22	1.98
43111602--43111779	27	6.6	27	83	3	178	29	28	15	26	1.96
43111628--43111778	82	1.9	81	88	4	232	28	27	16	27	1.97
43116297--43116332	17	2.1	17	89	5	54	66	0	0	33	0.92
43122145--43122281	37	3.7	37	91	0	211	24	30	19	24	1.98
43122495--43122875	47	8.1	47	89	0	564	27	29	11	30	1.92
43144894--43145145	68	3.8	65	75	11	201	30	16	27	24	1.97
43147648--43147887	27	8.9	27	85	2	286	25	13	20	40	1.89
43148186--43148257	18	4.1	18	83	3	92	23	23	11	41	1.86
43151511--43151639	27	4.8	27	90	0	186	25	13	18	41	1.88
43151511--43151671	54	3.0	53	86	1	187	24	14	19	41	1.88
43151511--43151660	27	5.6	27	86	3	158	25	12	19	42	1.86
43151988--43152025	17	2.2	18	95	4	69	23	23	10	42	1.85
43159779--43159861	42	2.0	42	92	0	139	30	28	15	25	1.96
43168632--43168689	29	2.1	28	84	12	75	34	5	25	34	1.78
43178135--43178165	15	2.1	15	93	0	53	54	16	12	16	1.71
43181901--43182009	37	2.9	37	94	0	182	26	30	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43182159--43182340	98	1.9	98	92	0	310	31	26	6	35	1.82
43182150--43182340	48	3.9	48	90	2	292	31	27	6	35	1.82
43182310--43182825	47	11.1	47	87	4	681	25	28	11	34	1.91
43182309--43182724	134	3.1	134	91	3	622	24	28	12	34	1.91
43191219--43191247	13	2.2	13	100	0	58	6	6	20	65	1.40
43193765--43193951	48	3.8	49	77	9	186	21	14	26	36	1.92
43196091--43196175	42	2.0	42	100	0	170	34	14	16	35	1.89
43203744--43203783	10	3.8	10	87	12	62	67	0	2	30	1.04
43203744--43203787	22	2.0	22	95	0	79	65	0	2	31	1.05
43213019--43213043	13	1.9	13	100	0	50	56	16	12	16	1.68
43214092--43214138	15	3.1	15	82	11	60	12	12	14	59	1.61
43222514--43222574	30	2.0	30	84	6	79	34	21	4	39	1.75
43225745--43225804	30	2.0	29	83	3	75	41	8	23	26	1.82
43226239--43226342	52	2.0	53	82	1	129	37	19	24	19	1.94
43232765--43232836	34	2.1	34	87	5	101	30	19	20	29	1.97
43240884--43240940	26	2.2	26	80	3	60	28	15	15	40	1.88
43250361--43250387	2	13.5	2	100	0	54	0	51	0	48	1.00
43251443--43251469	12	2.2	12	100	0	54	11	22	25	40	1.87
43254327--43254680	47	7.6	47	72	16	315	22	20	29	28	1.98
43254277--43254727	93	4.8	93	99	0	893	21	21	29	27	1.99
43258668--43258713	3	15.7	3	79	20	53	65	4	0	30	1.12
43258668--43258717	15	3.5	14	78	21	59	66	4	0	30	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43260266--43260386	41	2.9	42	90	2	199	29	24	16	28	1.97
43260435--43260645	44	4.9	43	68	5	120	22	19	21	36	1.96
43260908--43261002	43	2.2	44	86	1	129	25	24	22	28	1.99
43263639--43263689	24	2.1	24	96	0	93	21	39	17	21	1.93
43269312--43269376	22	3.0	22	77	8	69	20	21	23	35	1.96
43269535--43269591	27	2.1	27	83	6	71	15	22	24	36	1.94
43269746--43269865	6	19.3	6	70	19	77	20	18	13	48	1.81
43269746--43269856	31	3.5	31	90	1	150	19	18	12	48	1.80
43270652--43270706	27	2.0	28	89	6	87	54	5	0	40	1.23
43270689--43270732	22	2.0	22	86	0	61	38	4	0	56	1.20
43277188--43277330	60	2.3	63	80	10	163	27	26	19	25	1.99
43288958--43289012	24	2.3	24	93	0	92	34	29	14	21	1.93
43291481--43291559	39	2.0	39	90	0	122	34	13	26	25	1.94
43302212--43302337	50	2.5	49	84	7	157	23	30	15	30	1.95
43302316--43302475	45	3.5	44	80	11	144	21	28	21	28	1.99
43303419--43303508	44	2.0	44	100	0	180	17	14	17	50	1.79
43308320--43308369	24	2.1	24	85	7	66	38	14	0	48	1.44
43309088--43309299	93	2.3	93	91	0	343	31	29	17	21	1.96
43309080--43309246	47	3.6	47	71	16	166	32	29	16	21	1.95
43309132--43309292	46	3.5	46	73	17	152	32	29	16	21	1.95
43315039--43315976	47	20.0	47	98	0	1777	33	12	27	25	1.92
43316139--43316210	37	1.9	37	94	0	126	22	19	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43320550--43320846	46	6.5	46	100	0	594	23	19	26	30	1.98
43320867--43320910	21	2.1	21	100	0	88	40	9	36	13	1.76
43322171--43322214	23	1.9	23	81	9	54	31	6	18	43	1.76
43325121--43325210	31	2.9	30	76	11	92	47	0	7	44	1.32
43325131--43325190	32	1.9	31	86	3	84	48	0	3	48	1.18
43325634--43325728	49	2.0	49	91	2	156	18	26	10	44	1.82
43330220--43330326	24	4.3	24	71	18	85	57	2	0	39	1.13
43330220--43330364	76	1.9	73	94	4	254	58	2	0	37	1.17
43330287--43330341	24	2.3	24	81	6	67	63	3	0	32	1.12
43331270--43331316	24	1.9	25	82	4	60	38	4	4	53	1.40
43331557--43331631	36	2.1	36	100	0	150	30	10	16	42	1.81
43344162--43344200	21	1.9	20	89	5	60	33	0	20	46	1.51
43344244--43344293	25	2.0	25	96	0	91	38	6	20	36	1.77
43347391--43347513	50	2.4	50	82	5	149	39	13	17	30	1.87
43349248--43349443	39	5.0	39	83	4	202	21	21	28	28	1.99
43367813--43368714	46	19.8	46	97	1	1719	23	19	26	30	1.98
43368557--43368617	20	3.1	20	68	13	63	19	18	31	31	1.96
43375331--43375375	16	2.8	16	82	0	54	51	6	2	40	1.41
43376637--43376688	10	5.3	9	78	15	50	57	0	3	38	1.17
43376728--43376786	28	2.1	28	81	6	66	45	1	0	52	1.10
43379740--43379794	16	3.4	16	92	0	83	36	7	25	30	1.83
43384506--43384663	68	2.3	68	76	11	160	21	29	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43392100--43392240	43	3.3	43	74	15	130	22	14	24	38	1.92
43397324--43397499	39	4.5	39	87	2	237	30	28	22	18	1.97
43403872--43403994	39	3.1	39	85	3	131	33	30	19	16	1.94
43403889--43404067	39	4.5	39	87	2	225	30	27	21	20	1.98
43405239--43405387	75	2.0	75	97	0	280	40	15	13	30	1.86
43410014--43410165	43	3.5	42	79	7	137	26	17	22	34	1.96
43412832--43412943	46	2.4	47	91	4	183	20	25	16	37	1.93
43422549--43422815	46	5.8	46	100	0	534	30	28	19	21	1.98
43431432--43431499	29	2.3	29	85	5	93	27	30	13	27	1.94
43433282--43433543	47	5.6	47	74	12	270	29	30	18	22	1.97
43433329--43433589	46	5.6	46	75	12	273	29	29	18	21	1.97
43433274--43433592	93	3.4	93	99	0	629	29	29	18	22	1.97
43433279--43433608	46	7.1	45	69	23	174	29	29	18	22	1.98
43436743--43436775	15	2.2	15	100	0	66	63	18	6	12	1.48
43448623--43448682	27	2.3	26	82	2	66	23	21	20	35	1.96
43455690--43455733	19	2.3	19	100	0	88	36	27	31	4	1.77
43468611--43468753	43	3.3	42	78	11	139	27	13	26	32	1.94
43470122--43470177	21	2.7	21	82	0	76	16	28	33	21	1.95
43473401--43473582	40	4.6	40	93	2	305	24	23	26	25	2.00
43477740--43478027	48	6.0	48	77	4	256	27	19	27	25	1.99
43477740--43478022	96	2.9	95	84	5	311	27	19	27	25	1.99
43489571--43489611	21	2.0	21	85	0	55	43	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43490484--43490654	93	1.8	93	92	0	288	29	27	21	22	1.99
43490479--43490651	46	3.7	46	75	13	183	30	26	20	22	1.99
43491075--43491134	30	2.0	30	86	0	84	30	25	6	38	1.81
43497159--43497282	46	2.7	47	91	2	198	30	29	18	21	1.97
43497703--43497763	30	2.0	30	87	0	86	32	24	6	36	1.81
43503079--43503111	15	2.2	15	94	0	57	63	15	6	15	1.49
43511336--43512122	262	3.0	262	98	1	1493	31	15	23	29	1.95
43515889--43516311	209	2.0	209	94	0	747	32	22	14	30	1.94
43521941--43522117	47	3.8	47	73	13	157	23	30	15	29	1.96
43525765--43525880	25	4.6	25	79	4	108	28	21	25	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186