genome.fa.s20.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  175  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58173313--58173458	64	2.3	64	85	1	195	24	27	17	30	1.97
58174051--58174112	12	5.0	12	78	7	52	67	1	22	8	1.25
58174432--58174457	8	3.2	8	100	0	52	53	23	0	23	1.46
58178574--58178610	19	1.9	19	94	0	65	51	2	24	21	1.61
58179290--58179335	19	2.5	18	86	10	58	36	2	0	60	1.09
58179312--58179390	41	2.0	40	85	7	106	35	2	2	59	1.24
58179581--58179607	9	3.0	9	100	0	54	33	0	11	55	1.35
58189925--58190063	44	3.2	44	64	8	111	27	30	22	20	1.98
58189911--58190410	88	5.7	88	89	1	709	30	28	21	19	1.98
58189911--58190410	177	2.8	176	87	3	711	30	28	21	19	1.98
58190146--58190289	44	3.3	44	64	11	105	29	29	20	21	1.98
58190235--58190372	44	3.1	44	64	12	104	28	26	22	23	1.99
58190410--58190551	45	3.2	45	80	6	180	28	22	19	28	1.98
58190621--58190779	50	3.2	50	71	0	147	32	20	21	25	1.97
58190786--58191204	44	9.6	43	70	12	223	29	20	21	28	1.98
58190834--58191034	85	2.3	87	81	13	211	27	19	22	29	1.98
58190771--58191187	218	1.9	219	90	1	658	29	20	21	28	1.98
58190786--58191249	218	2.1	218	85	2	594	29	20	21	28	1.98
58191675--58191730	21	2.8	19	84	10	76	39	8	14	37	1.77
58191675--58191730	19	2.9	21	89	10	84	39	8	14	37	1.77
58191688--58191753	19	3.0	22	82	12	66	37	7	16	37	1.77
58193229--58193265	19	1.9	19	94	0	65	51	2	24	21	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58193945--58193990	19	2.5	18	86	10	58	36	2	0	60	1.09
58193967--58194045	41	2.0	40	85	7	106	35	2	2	59	1.24
58194236--58194262	9	3.0	9	100	0	54	33	0	11	55	1.35
58198267--58198421	79	2.0	79	96	1	285	28	11	7	52	1.63
58200444--58200491	18	2.6	18	83	9	53	52	2	2	43	1.24
58203389--58203461	37	2.0	37	97	0	137	45	6	15	32	1.72
58209850--58209979	41	3.1	41	80	3	134	34	23	20	22	1.97
58212237--58212336	37	2.7	37	76	6	103	19	15	29	37	1.91
58217578--58217660	22	3.9	21	85	4	103	46	21	20	10	1.81
58220874--58220970	42	2.3	42	85	5	124	30	13	16	39	1.87
58221058--58221151	24	3.9	24	79	5	109	25	20	22	31	1.98
58221059--58221153	48	2.0	48	89	0	145	25	20	23	31	1.98
58221107--58221258	64	2.4	64	86	0	205	26	18	23	30	1.98
58221171--58221217	24	2.0	24	86	0	67	27	21	23	27	1.99
58224522--58224745	88	2.4	89	83	7	254	25	25	17	31	1.97
58224522--58224754	44	5.1	43	69	12	162	24	25	17	32	1.96
58232312--58232401	45	2.0	45	86	0	126	28	26	14	30	1.95
58235035--58235065	16	1.9	16	93	0	53	38	16	12	32	1.86
58238669--58238712	21	2.1	21	87	8	63	54	0	2	43	1.12
58242290--58242322	16	2.1	16	100	0	66	57	12	30	0	1.35
58250071--58250101	12	2.6	12	89	0	53	41	16	6	35	1.74
58253759--58253840	31	2.6	31	90	0	119	20	30	10	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58255951--58256036	28	3.1	28	83	3	111	32	22	13	31	1.93
58255971--58256018	14	3.4	14	72	11	53	31	20	12	35	1.90
58256027--58256072	21	2.2	21	88	0	65	32	32	13	21	1.92
58262841--58262888	16	2.9	16	82	14	62	60	16	6	16	1.55
58262847--58262888	16	2.6	16	92	0	75	61	14	7	16	1.53
58267184--58267233	17	2.9	18	79	8	59	44	10	16	30	1.80
58269106--58269173	34	2.0	34	88	0	100	38	26	7	27	1.83
58270537--58270570	17	2.0	18	88	11	54	41	11	0	47	1.40
58278521--58278573	25	2.1	25	92	0	88	41	15	7	35	1.75
58283335--58283380	23	2.0	23	95	0	83	15	17	13	54	1.71
58285162--58285335	59	3.0	59	83	9	198	43	1	2	51	1.26
58285496--58285546	16	3.2	16	91	0	84	27	29	5	37	1.80
58287625--58287665	21	1.9	22	90	5	66	75	2	21	0	0.92
58289030--58289063	17	1.9	18	88	5	52	35	5	11	47	1.65
58294414--58294458	21	2.1	22	84	12	58	51	4	0	44	1.21
58295396--58295519	48	2.6	48	88	0	176	20	54	12	12	1.69
58295395--58295520	24	5.2	24	65	14	80	19	54	12	12	1.69
58303570--58303652	33	2.6	33	80	3	98	20	25	14	39	1.90
58307879--58307949	30	2.4	30	76	4	81	22	57	7	12	1.59
58307931--58307993	27	2.2	30	86	8	87	19	50	11	19	1.76
58312411--58312445	16	2.2	16	100	0	70	14	17	17	51	1.77
58312429--58312698	98	2.8	98	98	1	515	28	15	15	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58314854--58314960	21	5.2	21	80	6	112	45	17	22	14	1.84
58321356--58321398	15	2.9	15	83	10	54	69	4	2	23	1.18
58322582--58322689	32	3.5	30	73	13	85	25	12	4	58	1.53
58322714--58322805	41	2.2	42	78	1	105	22	7	1	68	1.21
58323020--58323057	3	12.7	3	94	0	67	31	2	0	65	1.06
58324023--58324235	72	3.0	72	98	1	410	41	4	9	45	1.56
58324338--58324684	178	1.9	180	91	1	563	35	9	6	48	1.61
58327143--58327176	17	1.9	18	88	5	52	17	0	8	73	1.08
58327559--58327597	20	2.0	20	84	0	51	33	0	7	58	1.26
58358868--58359105	41	5.8	41	98	0	449	26	22	21	29	1.99
58360625--58360649	13	1.9	13	100	0	50	68	24	0	8	1.16
58366577--58366773	41	4.8	41	92	5	317	27	22	20	28	1.99
58368306--58368330	13	1.9	13	100	0	50	68	24	0	8	1.16
58370835--58370912	41	1.9	41	94	0	138	32	6	12	48	1.67
58374534--58374570	19	1.9	19	100	0	74	37	2	16	43	1.62
58374612--58374693	41	2.0	41	95	0	146	29	8	14	47	1.74
58380495--58380549	23	2.3	25	79	20	64	70	7	18	3	1.25
58380677--58380711	18	1.9	18	88	0	52	2	17	8	71	1.23
58381303--58381364	9	6.9	9	90	0	88	25	11	27	35	1.90
58383742--58383975	79	3.0	79	85	6	293	14	17	17	50	1.78
58394640--58394665	13	2.0	13	100	0	52	46	15	7	30	1.74
58394673--58394737	30	2.2	30	97	0	121	27	30	3	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58395834--58395876	18	2.4	18	92	0	68	20	27	9	41	1.83
58399370--58399763	127	3.1	126	88	2	587	30	17	15	36	1.91
58399819--58399933	34	3.5	33	80	9	119	46	12	0	41	1.41
58399951--58400056	35	3.0	35	81	9	117	46	23	0	29	1.59
58400030--58400069	15	2.7	15	80	3	55	55	35	0	10	1.34
58402076--58402137	31	2.0	31	100	0	124	35	16	29	19	1.93
58406476--58406518	19	2.3	18	85	14	61	25	0	2	72	0.97
58412556--58412590	17	2.1	18	89	10	56	48	0	8	42	1.33
58413535--58413716	51	3.6	50	76	11	165	28	14	24	33	1.94
58417427--58417472	24	1.9	24	91	8	76	36	0	2	60	1.09
58421774--58421888	35	3.3	35	74	7	117	29	28	6	34	1.83
58426114--58426153	19	2.1	19	85	0	53	40	12	0	47	1.41
58426590--58426695	56	1.9	56	94	0	185	50	14	13	21	1.76
58429730--58429789	27	2.2	27	87	0	84	26	18	33	21	1.96
58430410--58430434	6	4.2	6	100	0	50	16	16	0	68	1.22
58431872--58431903	15	2.1	16	94	5	57	28	6	0	65	1.16
58433458--58433652	98	2.0	98	93	0	336	29	8	23	38	1.85
58435314--58435386	36	2.0	36	100	0	146	36	19	19	24	1.94
58442146--58443618	737	2.0	737	100	0	2946	32	16	24	26	1.97
58443658--58444602	44	21.7	43	71	13	436	29	19	23	28	1.98
58443702--58444029	173	1.9	173	81	7	407	30	20	21	28	1.98
58443632--58444364	217	3.4	217	93	0	1234	29	20	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58444487--58444612	45	2.8	44	81	12	150	27	18	26	26	1.98
58453126--58454070	44	21.7	43	71	13	436	29	19	23	28	1.98
58453170--58453497	173	1.9	173	81	7	407	30	20	21	28	1.98
58453100--58453832	217	3.4	217	93	0	1234	29	20	22	27	1.98
58453955--58454080	45	2.8	44	81	12	150	27	18	26	26	1.98
58454593--58454624	16	1.9	17	93	6	57	25	6	0	68	1.12
58454850--58454892	21	2.0	22	90	4	70	20	0	16	62	1.32
58455775--58455799	9	2.8	9	100	0	50	24	0	8	68	1.16
58456079--58456273	98	2.0	98	96	0	363	28	10	24	36	1.88
58461881--58461907	6	4.5	6	100	0	54	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186