genome.fa.s20.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  184  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60933701--60933746	21	2.2	22	85	11	62	69	2	2	26	1.11
60937829--60938304	240	2.0	240	97	0	889	30	15	15	38	1.89
60938368--60938876	255	2.0	255	97	0	964	33	14	20	31	1.93
60939912--60939962	21	2.4	22	83	3	68	43	0	7	49	1.32
60943913--60943965	23	2.2	24	83	10	63	60	9	9	20	1.55
60949058--60949102	18	2.5	18	81	0	54	28	37	13	20	1.90
60949265--60949310	18	2.6	17	83	10	56	36	23	8	30	1.85
60949293--60949352	21	2.9	21	82	0	75	36	20	5	38	1.74
60951840--60951869	15	1.9	15	93	6	51	0	13	0	86	0.57
60952055--60952102	24	2.0	24	84	8	62	56	4	4	35	1.38
60952337--60952505	67	2.5	67	79	12	175	63	1	3	30	1.21
60952434--60952476	21	2.1	20	87	12	61	65	0	6	27	1.18
60952675--60952722	20	2.5	19	83	12	62	25	4	6	64	1.35
60958379--60958457	12	6.8	11	91	7	61	17	0	1	81	0.77
60958388--60958455	6	11.3	6	95	4	120	16	0	0	83	0.64
60964260--60964293	18	1.9	18	88	5	52	29	14	14	41	1.86
60965512--60965591	29	2.8	28	79	7	99	28	35	12	23	1.91
60965512--60965598	28	3.1	28	78	3	102	28	32	11	27	1.91
60969719--60969928	40	5.3	39	89	4	242	25	21	27	25	1.99
60969666--60969928	120	2.2	120	82	4	309	25	21	27	25	1.99
60969667--60969963	80	3.7	80	81	6	230	26	21	27	24	1.99
60977669--60977878	40	5.3	39	89	4	242	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60977616--60977878	120	2.2	120	82	4	309	25	21	27	25	1.99
60977617--60977913	80	3.7	80	81	6	230	26	21	27	24	1.99
60990429--60990514	27	3.2	27	83	0	109	46	20	4	27	1.71
60990519--60990633	27	4.3	27	89	0	176	30	22	8	38	1.84
60990559--60990698	27	5.2	27	82	0	118	37	24	6	32	1.81
60990710--60990851	27	5.3	27	86	0	185	34	19	21	25	1.96
60990680--60990851	54	3.2	55	81	4	181	35	19	19	26	1.95
60990680--60990852	81	2.1	81	81	2	222	35	19	19	26	1.95
60991245--60991321	31	2.5	31	85	4	102	22	15	14	48	1.81
60991245--60991338	6	15.3	6	70	16	59	21	14	14	48	1.80
60993385--60993559	27	6.5	26	77	5	127	40	21	8	30	1.83
60993385--60993559	54	3.3	54	75	7	160	40	21	8	30	1.83
60993385--60993559	81	2.2	80	80	7	194	40	21	8	30	1.83
60993565--60993678	27	4.2	27	90	0	183	30	22	7	39	1.81
60993577--60993768	27	7.1	27	83	1	134	36	22	6	33	1.81
60993566--60993743	54	3.3	54	80	3	151	35	23	6	34	1.80
60993566--60993721	81	1.9	81	84	0	204	32	23	7	37	1.82
60993699--60993800	27	3.8	28	82	7	104	43	21	7	27	1.80
60993782--60993896	27	4.3	27	89	2	169	33	19	21	26	1.97
60994291--60994369	31	2.5	31	85	0	104	20	16	13	49	1.79
60994291--60994369	6	12.8	6	70	15	54	20	16	13	49	1.79
60994348--60994393	24	1.9	24	86	0	65	19	8	13	58	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60995665--60995838	76	2.3	76	80	4	172	35	27	22	14	1.94
60995680--60995846	38	4.4	38	70	7	115	36	26	21	15	1.93
60995860--60995893	16	2.1	16	94	0	59	20	35	32	11	1.89
60995816--60995926	54	2.1	54	82	0	132	33	28	23	14	1.94
60996170--60996225	28	2.0	28	100	0	112	32	7	10	50	1.64
60996464--60996503	21	2.0	20	85	5	53	47	17	0	35	1.48
60998443--60998476	17	1.9	18	88	5	52	11	26	41	20	1.87
61004104--61004376	38	7.2	37	80	4	260	35	29	21	12	1.91
61004101--61004376	151	1.8	152	84	3	378	35	28	22	12	1.91
61004104--61004373	113	2.4	113	84	0	333	36	28	21	12	1.91
61020173--61020296	46	2.7	47	83	7	164	25	19	31	23	1.98
61020171--61020296	47	2.7	46	84	7	166	25	19	31	23	1.98
61021110--61021242	55	2.4	55	84	0	158	24	18	28	27	1.98
61023049--61023099	25	2.0	25	96	0	93	29	3	5	60	1.38
61023846--61023931	32	2.6	33	76	9	86	29	25	18	26	1.98
61024241--61024293	26	2.0	26	82	7	63	22	13	20	43	1.86
61025537--61025635	24	4.1	23	85	6	126	20	38	5	36	1.74
61032286--61032322	19	1.9	19	100	0	74	32	37	13	16	1.87
61041319--61041344	13	2.0	13	100	0	52	53	15	0	30	1.42
61041765--61041791	14	1.9	14	100	0	54	59	11	7	22	1.56
61061302--61061676	49	7.5	49	83	3	489	25	19	26	28	1.99
61061297--61061684	100	3.9	100	98	0	731	25	19	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61064647--61064733	34	2.5	35	80	10	90	31	8	16	44	1.76
61067142--61067233	28	3.2	28	81	3	121	23	15	36	23	1.93
61069534--61069573	21	2.0	21	85	5	55	30	15	20	35	1.93
61075383--61075484	34	3.0	34	80	7	91	27	25	20	26	1.99
61085533--61085857	48	7.3	41	81	8	220	29	25	16	28	1.97
61085646--61085833	48	3.9	48	91	2	290	27	24	17	30	1.97
61085787--61085969	37	4.8	37	82	13	205	25	28	18	26	1.98
61088844--61089065	112	2.0	112	97	0	417	34	19	4	40	1.73
61100055--61100329	136	2.0	136	99	0	541	35	25	5	33	1.80
61106951--61107040	34	2.6	34	79	6	92	26	25	21	26	1.99
61115664--61115702	21	1.9	20	84	5	51	25	28	35	10	1.89
61116938--61117105	46	3.6	45	73	12	142	22	28	21	27	1.99
61123333--61123388	21	2.7	21	91	2	87	25	28	33	12	1.92
61127726--61127794	33	2.1	33	97	0	129	40	13	17	28	1.87
61133275--61133423	40	3.7	40	87	5	221	26	26	22	24	2.00
61133242--61133419	80	2.2	80	85	6	229	24	26	23	25	2.00
61133840--61133882	22	2.0	22	95	0	77	11	32	6	48	1.66
61135549--61135661	46	2.4	46	85	7	140	23	28	19	29	1.98
61152637--61152666	2	15.0	2	100	0	60	0	0	50	50	1.00
61160535--61160564	15	2.1	14	93	6	51	26	26	0	43	1.54
61168138--61168234	28	3.4	28	91	2	142	34	24	10	30	1.89
61168137--61168265	57	2.3	57	86	2	179	32	26	11	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61168138--61168265	29	4.5	28	87	2	166	32	25	11	29	1.91
61171122--61171276	42	3.7	42	81	5	168	31	24	15	28	1.95
61175930--61175965	17	2.1	18	89	5	56	16	30	41	11	1.83
61178351--61178447	47	2.1	47	100	0	194	44	8	24	22	1.80
61178927--61179057	47	2.8	46	82	13	169	26	19	32	22	1.97
61178927--61179142	46	4.6	46	80	10	208	28	18	31	21	1.97
61185936--61186190	140	1.8	139	84	5	352	28	18	29	23	1.98
61185927--61186194	47	5.7	47	73	11	196	28	19	29	23	1.98
61193370--61193513	77	1.9	75	82	7	182	34	25	18	22	1.96
61195041--61195141	50	2.0	50	94	0	175	33	26	13	25	1.94
61195100--61195220	37	3.3	37	83	4	154	35	26	16	21	1.94
61214899--61214940	21	2.0	21	81	9	50	19	38	16	26	1.92
61220343--61220429	43	2.0	43	97	0	165	33	6	21	37	1.80
61230629--61230707	6	12.8	6	70	15	54	48	12	18	20	1.81
61230641--61230707	25	2.7	25	88	0	98	44	13	20	20	1.85
61230825--61230904	26	3.0	26	83	3	88	40	22	20	17	1.92
61231063--61231128	22	3.0	22	76	8	71	33	22	24	19	1.97
61231555--61232076	27	19.3	27	81	4	486	25	20	17	37	1.94
61231559--61232067	54	9.4	54	82	1	583	24	20	17	36	1.94
61231557--61232074	81	6.4	81	84	2	612	25	20	17	37	1.94
61232106--61232396	27	10.9	27	83	5	333	30	9	20	38	1.86
61232106--61232396	53	5.5	53	84	3	336	30	9	20	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61232106--61232396	80	3.6	81	84	5	360	30	9	20	38	1.86
61234361--61234427	25	2.7	25	83	0	80	47	10	19	22	1.79
61234545--61234624	26	3.0	26	85	3	106	40	22	21	16	1.91
61235279--61235731	27	16.9	27	83	5	488	24	21	16	36	1.94
61235275--61235731	81	5.7	81	88	0	639	24	21	17	36	1.94
61235294--61235731	54	8.1	54	86	2	549	24	21	17	36	1.94
61235789--61236168	27	14.2	27	78	7	373	30	11	20	38	1.87
61235789--61236168	53	7.1	53	81	3	397	30	11	20	38	1.87
61235789--61236168	80	4.8	80	80	5	385	30	11	20	38	1.87
61235770--61236168	214	1.9	214	85	3	552	30	10	20	38	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186