genome.fa.s20.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  172  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57129225--57129249	13	1.9	13	100	0	50	56	0	8	36	1.29
57143692--57143823	47	2.8	48	80	2	149	34	28	17	19	1.95
57147070--57147106	18	2.1	18	94	0	65	43	24	0	32	1.55
57147822--57147861	21	1.9	21	100	0	80	42	20	5	32	1.73
57151054--57151136	23	3.6	23	91	0	139	27	32	25	14	1.95
57153617--57153801	40	4.6	39	82	5	194	25	22	27	24	2.00
57153617--57153801	79	2.3	81	82	7	218	25	22	27	24	2.00
57153669--57153832	79	2.1	79	79	6	181	27	20	25	26	1.99
57155151--57155369	114	1.9	114	99	0	429	35	20	21	22	1.96
57166453--57166480	4	7.0	4	100	0	56	75	0	0	25	0.81
57179909--57179947	20	1.9	21	89	5	62	28	51	2	17	1.59
57180517--57180631	29	4.0	28	80	8	124	31	27	13	27	1.93
57180508--57180618	58	1.9	58	85	1	152	30	27	13	27	1.94
57189277--57189360	31	2.7	31	90	1	134	28	23	16	30	1.96
57189384--57189473	42	2.1	42	83	0	117	36	21	14	27	1.92
57189621--57189743	26	4.8	26	89	3	187	26	21	24	26	2.00
57189608--57189743	52	2.7	51	89	5	206	26	22	22	28	1.99
57190549--57190634	27	3.2	27	86	1	111	20	25	17	36	1.95
57190688--57190739	27	1.9	27	85	14	72	36	13	11	38	1.81
57190776--57191010	81	2.9	81	88	1	312	28	7	22	41	1.81
57190750--57191146	27	14.7	27	81	5	241	32	8	21	37	1.83
57200333--57200409	38	2.0	38	97	0	145	31	12	14	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57202819--57202861	21	2.0	21	90	0	68	44	11	11	32	1.77
57211888--57211960	38	1.9	38	86	5	103	24	24	17	32	1.97
57220162--57220421	46	5.6	46	73	13	228	21	18	29	30	1.97
57220149--57220412	93	2.8	93	96	1	476	21	19	29	29	1.98
57220201--57220367	47	3.6	47	76	11	198	21	18	29	29	1.97
57223559--57223613	27	2.0	27	100	0	110	49	10	14	25	1.76
57228418--57228458	21	2.0	21	90	0	64	43	24	12	19	1.85
57230468--57230506	14	2.8	14	84	0	51	7	23	17	51	1.71
57233942--57233984	18	2.4	18	81	11	52	32	9	34	23	1.87
57233951--57233985	18	1.9	18	88	11	54	28	5	37	28	1.80
57236898--57236960	29	2.2	29	81	16	69	39	20	12	26	1.89
57236954--57237243	59	4.8	61	82	3	372	41	27	9	21	1.84
57236954--57237236	120	2.4	120	97	0	530	40	27	9	21	1.85
57237412--57237609	54	3.7	52	75	10	159	22	25	14	37	1.92
57237409--57237609	108	1.9	107	81	5	244	22	25	14	36	1.93
57239753--57239810	29	2.0	29	86	6	82	20	25	12	41	1.87
57246345--57246372	12	2.3	12	100	0	56	21	14	57	7	1.61
57256483--57256563	33	2.4	35	75	10	87	30	24	17	27	1.97
57256874--57256926	26	2.0	26	82	7	63	20	15	22	41	1.89
57258179--57258253	24	3.1	24	90	0	114	20	37	4	38	1.71
57258451--57258481	15	2.1	15	100	0	62	35	38	19	6	1.77
57264752--57264804	26	2.0	26	82	7	63	20	18	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57265751--57265827	24	3.2	24	90	0	127	19	37	5	37	1.74
57266787--57266829	21	2.0	21	82	8	52	62	18	0	18	1.32
57273803--57273910	28	3.9	28	82	4	137	34	29	9	26	1.88
57273805--57273910	56	1.9	56	94	0	185	33	30	9	26	1.88
57273919--57274012	40	2.3	40	90	3	145	36	24	15	23	1.94
57280951--57281006	28	2.0	28	92	0	94	32	28	10	28	1.90
57282548--57282722	46	3.8	44	72	13	122	30	17	26	25	1.97
57298499--57298565	20	3.1	21	80	16	91	31	4	20	43	1.72
57298487--57298560	24	3.3	24	80	16	104	31	4	22	41	1.72
57300971--57301116	40	3.7	40	84	7	181	26	27	22	23	2.00
57302243--57302362	56	2.1	56	96	0	222	22	24	9	44	1.82
57308167--57308259	40	2.3	40	90	3	143	27	27	20	23	1.99
57309439--57309558	56	2.1	56	96	0	222	22	24	9	44	1.82
57329859--57330152	50	5.9	50	80	3	288	26	15	24	32	1.96
57330015--57330097	26	3.3	26	68	19	75	26	12	27	33	1.92
57329909--57330193	149	1.9	151	83	1	358	26	16	26	30	1.97
57330351--57330380	16	1.9	15	93	6	51	43	0	23	33	1.54
57334071--57334195	39	3.2	39	82	0	160	33	19	24	23	1.97
57337103--57337141	15	2.6	15	95	0	69	15	15	15	53	1.73
57339732--57340225	50	9.9	50	80	2	517	26	15	25	31	1.96
57339792--57340211	99	4.2	99	94	0	669	27	16	25	30	1.96
57340424--57340453	16	1.9	15	93	6	51	40	6	23	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57349771--57349830	30	2.0	30	87	6	86	36	8	26	28	1.85
57350477--57350622	50	2.9	50	85	3	188	26	17	28	27	1.98
57357796--57357835	21	2.0	21	85	5	55	22	22	37	17	1.94
57358988--57359259	94	2.8	94	82	8	300	25	29	18	26	1.98
57358987--57359258	47	5.7	48	75	13	240	24	29	19	26	1.98
57381853--57381919	34	2.0	33	96	0	116	20	16	17	43	1.87
57385611--57385657	22	2.3	19	85	14	58	44	2	0	53	1.12
57385613--57385654	16	2.7	15	79	20	50	45	2	0	52	1.13
57386319--57386379	25	2.4	27	76	13	67	36	3	1	59	1.24
57387856--57387981	49	2.6	50	80	7	143	30	21	24	23	1.99
57404740--57404897	68	2.3	67	80	11	167	34	16	27	20	1.94
57410257--57410485	58	3.9	58	99	0	449	24	8	27	39	1.84
57415832--57415862	16	1.9	16	93	0	53	35	22	0	41	1.54
57415829--57415868	20	2.0	20	85	0	53	37	22	0	40	1.54
57416093--57416305	55	3.9	54	78	6	225	23	24	18	34	1.96
57416101--57416301	108	1.8	110	87	4	300	23	24	18	33	1.97
57416054--57416308	55	4.8	54	76	9	215	21	24	18	35	1.95
57423535--57423565	16	1.9	16	93	0	53	35	22	0	41	1.54
57423825--57424011	55	3.5	53	78	10	175	23	25	17	34	1.96
57426940--57426978	11	3.5	11	89	0	51	15	2	43	38	1.60
57432280--57432323	23	1.9	23	86	9	63	34	6	22	36	1.81
57434346--57434392	19	2.5	19	100	0	94	21	44	21	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57447876--57447976	42	2.4	42	85	5	132	31	24	17	25	1.97
57447855--57447976	43	2.9	43	81	6	142	31	26	18	24	1.97
57453552--57453721	40	4.2	40	96	0	295	28	28	20	22	1.99
57473367--57473546	40	4.5	40	92	4	292	25	28	23	22	1.99
57478215--57478392	27	6.6	27	83	3	205	26	15	28	29	1.96
57478216--57478371	82	1.9	81	88	3	233	26	15	28	29	1.96
57478212--57478392	82	2.2	81	83	2	229	27	15	27	29	1.96
57486278--57486455	27	6.6	27	83	3	205	26	15	28	29	1.96
57486279--57486434	82	1.9	81	88	3	233	26	15	28	29	1.96
57486275--57486455	82	2.2	81	83	2	229	27	15	27	29	1.96
57491073--57491124	22	2.4	21	78	21	54	28	7	1	61	1.34
57495008--57495038	16	1.9	16	93	0	53	35	22	0	41	1.54
57495005--57495044	20	2.0	20	85	0	53	37	22	0	40	1.54
57495276--57495482	55	3.8	55	79	6	190	22	27	17	32	1.96
57495276--57495474	108	1.8	110	85	4	287	23	26	17	32	1.97
57498348--57498388	17	2.4	16	84	11	55	70	2	21	4	1.18
57519140--57519214	38	2.0	38	91	0	123	22	28	33	16	1.95
57523312--57523355	23	1.9	23	86	9	63	36	6	22	34	1.81
57534219--57534255	15	2.5	15	100	0	74	43	27	0	29	1.55
57534974--57535074	42	2.4	42	78	5	114	33	22	16	26	1.96
57540771--57540828	30	1.9	30	82	6	73	24	31	25	18	1.98
57548439--57548510	36	2.0	36	91	2	119	16	38	1	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57548634--57548682	23	2.2	22	82	13	57	24	61	12	2	1.42
57548706--57548846	70	2.0	70	100	0	282	26	9	5	57	1.53
57548708--57548880	70	2.5	69	88	4	206	26	11	6	56	1.59
57554020--57554178	43	3.7	43	76	10	155	30	25	18	24	1.98
57555753--57555825	26	2.9	26	84	11	98	31	19	8	41	1.81
57557186--57557408	40	5.6	40	85	3	236	26	27	21	24	1.99
57557340--57557417	40	1.9	41	82	10	97	26	28	21	23	1.99
57560477--57560522	22	2.1	22	84	4	58	47	19	0	32	1.50
57562737--57562781	15	3.0	15	83	9	56	44	2	0	53	1.13
57564118--57564206	22	3.9	22	76	10	81	19	24	17	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186