genome.fa.s20.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  106  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34873869--34873909	11	3.7	11	80	0	55	56	9	14	19	1.66
34876785--34876943	43	3.7	43	89	4	223	28	14	22	34	1.93
34882393--34882571	91	2.0	91	97	0	340	41	7	12	38	1.70
34887916--34888385	27	17.1	27	78	8	353	38	18	10	31	1.85
34887915--34888383	54	8.6	53	79	8	424	39	18	10	31	1.85
34889927--34889956	15	2.0	15	93	0	51	20	16	13	50	1.78
34891847--34891968	46	2.6	47	83	5	149	22	31	18	27	1.97
34893301--34893763	54	8.6	53	79	7	411	39	18	10	31	1.85
34893308--34893760	81	5.6	81	78	5	427	39	18	10	32	1.84
34893302--34893762	27	17.1	27	79	9	329	39	18	10	31	1.85
34893715--34893779	27	2.4	27	82	5	69	43	16	10	29	1.82
34904359--34904612	127	2.0	127	96	0	463	29	18	12	38	1.89
34910111--34910328	71	3.1	71	63	21	188	38	7	20	33	1.81
34910097--34910373	138	2.0	138	100	0	554	38	7	21	32	1.82
34917797--34917832	8	4.2	8	86	13	54	63	0	0	36	0.94
34917797--34917832	18	2.1	16	90	10	54	63	0	0	36	0.94
34919787--34919971	79	2.3	82	83	7	229	24	27	22	24	2.00
34919768--34919971	40	5.1	40	81	8	229	24	27	22	25	2.00
34931365--34931435	34	2.1	34	97	0	133	35	16	14	33	1.89
34937324--34937685	46	7.8	46	77	15	379	21	19	29	29	1.98
34937321--34937676	93	3.8	93	98	0	685	21	20	29	28	1.98
34939196--34939239	22	2.0	22	95	0	79	22	29	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34943001--34943131	27	4.9	26	75	10	104	40	20	8	30	1.82
34943115--34943321	27	7.7	27	83	7	244	37	17	18	26	1.93
34943115--34943321	81	2.6	81	88	3	301	37	17	18	26	1.93
34943535--34943616	27	3.1	26	85	5	101	19	20	20	39	1.93
34943724--34943782	22	2.7	22	83	0	73	20	23	22	33	1.97
34943949--34944023	27	2.8	26	76	8	69	22	22	17	37	1.94
34948384--34948430	25	1.9	24	83	12	60	55	0	36	8	1.31
34948398--34948446	24	2.0	25	88	4	73	59	0	32	8	1.27
34954412--34954499	44	2.0	44	86	0	122	28	22	27	21	1.99
34966129--34966236	44	2.4	44	87	3	144	29	23	13	33	1.93
34966438--34966863	213	2.0	213	97	0	798	31	22	7	37	1.83
34966939--34967020	41	2.0	42	97	2	157	31	14	14	39	1.87
34975312--34975439	29	4.5	28	88	2	175	32	25	12	28	1.92
34975311--34975439	57	2.3	57	87	2	188	32	26	12	28	1.92
34980123--34980216	14	6.4	14	70	23	61	17	6	1	75	1.06
34980127--34980196	6	11.5	6	74	8	52	14	7	1	77	1.05
34980129--34980206	17	4.8	16	76	12	61	16	7	1	74	1.11
34983103--34983135	13	2.6	13	90	4	50	39	0	12	48	1.40
34993663--34993708	17	2.7	18	76	6	51	21	17	15	45	1.85
35012433--35012495	33	1.9	33	93	0	108	50	17	3	28	1.61
35012631--35012695	30	2.2	29	83	5	78	29	10	1	58	1.41
35024050--35024085	15	2.3	16	95	4	65	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35024165--35024561	211	1.9	209	96	1	740	19	14	17	48	1.80
35028172--35028207	17	2.1	17	100	0	72	22	16	38	22	1.93
35028461--35028510	21	2.4	21	86	0	64	16	30	28	26	1.96
35034765--35034797	13	2.6	13	90	4	50	39	0	12	48	1.40
35045325--35045370	17	2.7	18	76	6	51	21	17	15	45	1.85
35048490--35048791	74	4.1	74	99	0	588	33	15	6	44	1.73
35051507--35051694	51	3.7	50	77	4	189	23	15	27	32	1.95
35052859--35052894	18	1.9	19	88	5	56	25	19	11	44	1.83
35052895--35053094	103	1.9	103	91	2	330	25	12	24	38	1.90
35055536--35055604	35	2.0	35	100	0	138	43	8	14	33	1.76
35057669--35057731	33	1.9	33	96	0	117	19	34	15	30	1.93
35068255--35068284	9	3.3	9	90	0	51	53	3	0	43	1.17
35074309--35074386	40	2.0	40	90	5	124	29	17	3	48	1.65
35077967--35077994	14	2.0	14	100	0	56	42	7	7	42	1.59
35078177--35078322	48	3.0	48	93	0	238	34	6	21	36	1.81
35078291--35078403	59	1.9	60	88	1	174	24	6	32	36	1.81
35084518--35084547	8	3.8	8	100	0	60	73	0	0	26	0.84
35090312--35090703	194	2.0	193	83	3	493	20	28	25	26	1.99
35092701--35092725	8	3.1	8	100	0	50	76	0	0	24	0.80
35093875--35093912	13	2.8	14	85	14	53	52	0	15	31	1.43
35094608--35094641	10	3.4	10	91	0	59	2	0	35	61	1.11
35096735--35097104	43	8.7	42	75	7	309	34	24	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35096699--35097066	85	4.3	85	96	0	648	34	24	16	25	1.95
35102913--35103136	42	5.3	42	73	13	167	36	22	15	25	1.93
35102903--35103107	85	2.4	85	86	3	279	35	22	15	25	1.94
35102903--35103136	85	2.8	85	85	3	267	35	22	16	25	1.94
35103444--35104489	347	3.0	348	98	0	2031	34	17	8	39	1.81
35106318--35106382	26	2.5	26	94	0	112	23	24	24	27	2.00
35107777--35107946	40	4.3	40	83	1	198	23	22	29	24	1.99
35107800--35107946	79	1.9	80	86	1	215	23	21	29	25	1.99
35107799--35107981	79	2.3	80	80	1	208	25	21	28	24	1.99
35115691--35115860	40	4.3	40	83	1	198	23	22	29	24	1.99
35115714--35115860	79	1.9	80	86	1	215	23	21	29	25	1.99
35115713--35115895	79	2.3	80	80	1	208	25	21	28	24	1.99
35117644--35117700	30	1.9	30	92	0	96	24	15	21	38	1.92
35128505--35128533	15	1.9	15	100	0	58	34	27	6	31	1.83
35140579--35140609	16	1.9	16	93	0	53	9	6	9	74	1.23
35143890--35144062	47	3.7	46	76	12	147	30	22	26	20	1.99
35143888--35144107	95	2.4	91	84	4	271	29	20	27	22	1.99
35143936--35144106	47	3.7	44	76	11	164	27	21	29	22	1.99
35143890--35144206	49	6.7	47	73	14	208	30	20	26	22	1.98
35147610--35147650	16	2.3	18	84	12	50	78	2	14	4	1.03
35152784--35152828	22	2.0	22	87	8	65	44	13	8	33	1.75
35153067--35153234	40	4.2	40	86	0	239	26	28	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35155307--35155360	18	2.9	18	78	13	56	22	3	1	72	1.10
35156116--35156190	31	2.4	31	81	0	78	20	24	38	17	1.93
35160244--35160288	17	2.6	17	80	16	56	17	4	0	77	0.92
35160250--35160374	27	4.8	26	70	21	75	18	4	4	73	1.15
35160256--35160373	5	22.8	5	68	23	50	18	3	3	74	1.10
35161306--35161383	11	7.0	11	70	13	52	8	7	7	75	1.19
35161306--35161359	23	2.3	23	84	6	65	7	9	7	75	1.18
35163193--35163251	30	2.0	30	93	0	100	28	28	25	16	1.97
35163201--35163264	30	2.1	30	88	0	92	34	29	20	15	1.94
35167898--35167959	30	2.1	30	87	6	90	46	4	9	38	1.58
35168591--35168633	6	7.0	6	92	5	68	48	0	0	51	1.00
35175292--35175422	49	2.7	48	84	8	167	24	25	20	29	1.99
35175392--35175513	46	2.7	45	85	10	151	24	31	16	27	1.96
35182611--35182731	44	2.7	44	85	6	154	27	27	19	25	1.99
35182612--35182780	47	3.7	46	80	10	150	26	27	19	26	1.99
35189055--35189173	55	2.2	55	82	5	143	24	27	25	22	2.00
35193267--35193484	40	5.5	40	89	2	289	23	23	27	24	2.00
35201692--35201761	5	12.0	6	72	24	53	48	1	1	48	1.19
35201692--35201761	11	6.5	11	68	28	53	48	1	1	48	1.19
35201693--35201768	17	4.4	16	81	14	89	48	1	2	47	1.24
35206270--35206304	3	11.7	3	100	0	70	31	0	0	68	0.90
35211833--35211867	18	1.9	18	88	0	52	25	0	5	68	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35211838--35211876	6	6.5	6	87	0	51	20	0	2	76	0.90
35216900--35216940	20	2.0	20	100	0	82	24	29	14	31	1.95
35219863--35219911	25	2.0	25	91	0	80	48	12	20	18	1.79
35234942--35235115	46	3.8	46	76	14	178	21	20	28	29	1.98
35234939--35235109	93	1.8	93	89	2	272	21	21	29	28	1.98
35238079--35238181	46	2.2	48	87	3	147	34	14	24	26	1.94
35241451--35241491	13	3.2	13	82	0	55	17	29	29	24	1.97
35264898--35265069	92	1.9	93	84	6	233	23	30	19	26	1.98
35266175--35266298	40	3.1	38	88	5	167	26	21	27	24	1.99
35271513--35271763	46	5.4	45	76	8	186	25	27	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186