genome.fa.s20.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  153  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50777961--50778132	67	2.6	66	81	7	170	31	16	29	22	1.95
50777985--50778169	67	2.9	64	78	8	196	28	16	31	23	1.96
50780233--50780432	40	5.0	39	89	4	251	26	29	22	22	1.99
50788453--50788612	40	4.0	40	88	3	198	25	27	23	23	2.00
50788605--50788670	32	2.1	32	100	0	132	28	27	15	28	1.96
50799710--50799764	27	2.0	27	85	0	74	41	14	23	20	1.89
50801558--50801742	40	4.7	40	83	6	216	24	21	27	26	1.99
50801611--50801775	79	2.1	79	83	6	201	26	20	27	26	1.99
50806246--50806293	25	1.9	25	86	0	69	33	25	14	27	1.94
50806330--50806396	20	3.3	20	89	0	107	32	11	22	32	1.90
50806445--50806540	24	4.0	24	94	0	165	28	25	20	26	1.99
50814664--50814832	24	7.0	24	88	2	232	28	24	20	26	1.99
50830654--50830729	35	2.1	37	95	4	138	25	17	21	36	1.94
50833537--50833595	28	2.1	28	100	0	118	30	10	10	49	1.70
50841197--50841235	19	2.1	18	90	4	60	2	53	0	43	1.14
50842888--50842917	14	2.1	14	93	0	51	16	3	3	76	1.05
50846831--50847043	43	5.0	43	82	7	265	34	26	12	26	1.92
50848302--50848346	22	2.2	20	88	8	63	40	17	6	35	1.76
50852699--50852875	40	4.4	40	85	5	205	33	24	16	25	1.95
50852697--50852875	80	2.2	80	87	0	259	33	24	16	25	1.96
50860769--50860836	34	2.0	34	94	0	118	41	16	14	27	1.87
50862105--50862285	40	4.6	40	82	6	199	28	22	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50862105--50862285	79	2.3	79	80	5	179	28	22	27	22	1.99
50870951--50871174	40	5.6	40	91	1	308	24	20	28	26	1.99
50870912--50871174	80	3.3	80	85	3	318	23	20	28	26	1.99
50870912--50871174	120	2.2	120	82	4	318	23	20	28	26	1.99
50872665--50872764	50	2.0	50	100	0	200	28	14	20	38	1.91
50879047--50879225	40	4.5	40	82	7	188	24	21	26	27	1.99
50883468--50883540	36	2.0	36	94	0	128	38	20	16	24	1.93
50890878--50891012	56	2.4	56	83	0	171	34	22	11	31	1.90
50896469--50896613	40	3.6	40	88	1	175	25	22	26	25	2.00
50896469--50896640	80	2.2	80	80	3	186	24	20	26	27	1.99
50901861--50901909	25	2.0	25	83	0	62	42	14	6	36	1.70
50905609--50905711	39	2.6	40	79	3	118	26	17	24	32	1.97
50905702--50905778	28	2.8	28	85	0	100	25	11	31	31	1.92
50909483--50909567	21	3.9	23	75	12	88	16	20	24	38	1.92
50909480--50909567	42	2.0	42	84	4	113	17	20	23	38	1.93
50909719--50909756	13	3.0	13	85	14	53	47	0	23	28	1.52
50917967--50918037	26	2.8	26	89	4	101	25	26	21	26	1.99
50917965--50918064	24	4.0	23	79	11	65	28	26	20	26	1.99
50921268--50921313	24	1.9	24	86	0	65	32	23	13	30	1.93
50921423--50921491	24	2.8	24	84	6	93	27	24	24	23	2.00
50928190--50928228	21	1.9	20	89	5	60	46	20	0	33	1.51
50931641--50931742	27	3.8	27	82	6	111	25	24	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50935418--50935481	26	2.4	26	84	2	83	39	25	7	28	1.83
50935585--50935690	27	3.9	26	85	4	122	22	23	19	33	1.97
50935584--50935697	55	2.1	53	84	7	149	21	22	20	35	1.96
50937324--50937540	54	4.0	55	84	4	246	39	18	8	32	1.82
50937341--50937586	27	9.1	27	77	7	212	38	20	9	30	1.85
50937606--50937854	27	9.2	27	85	1	311	35	17	20	26	1.94
50938523--50938548	2	13.0	2	100	0	52	50	50	0	0	1.00
50938558--50938617	27	2.3	26	82	2	66	21	21	20	36	1.95
50940332--50940493	48	3.4	48	96	0	288	35	22	19	22	1.96
50946116--50946543	40	10.7	40	95	0	712	30	20	27	21	1.98
50954277--50954526	40	6.3	40	94	0	385	24	20	28	26	1.99
50954224--50954526	80	3.8	80	88	2	387	24	20	28	26	1.99
50954224--50954526	120	2.5	119	86	2	401	24	20	28	26	1.99
50958142--50958324	92	2.0	92	97	0	348	36	18	12	33	1.87
50970216--50970267	25	2.1	25	100	0	104	30	25	7	36	1.84
50979868--50980045	27	6.6	27	83	3	205	26	15	28	29	1.96
50979869--50980024	82	1.9	81	88	3	233	26	15	28	29	1.96
50979865--50980045	82	2.2	81	83	2	229	27	15	27	29	1.96
50983608--50983738	52	2.5	53	87	4	187	28	29	14	27	1.95
50986730--50986907	27	6.6	27	83	3	205	26	15	28	29	1.96
50986731--50986886	82	1.9	81	88	3	233	26	15	28	29	1.96
50986727--50986907	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50988453--50988591	48	2.9	48	83	1	181	33	13	21	31	1.92
50988557--50988631	38	2.0	38	94	0	132	26	17	28	28	1.98
50989458--50989489	10	3.4	10	83	16	50	28	0	0	71	0.86
50989648--50989686	14	2.6	15	92	8	62	7	23	10	58	1.56
50990877--50990999	38	3.2	38	87	0	183	30	25	21	21	1.99
50996722--50996783	11	5.5	11	75	9	54	4	12	24	58	1.54
50998042--50998077	14	2.6	14	86	0	54	22	50	22	5	1.70
51013779--51013924	40	3.7	40	84	7	181	26	27	22	23	2.00
51015555--51015706	38	3.8	38	79	14	187	29	15	25	29	1.96
51018740--51019108	49	7.4	49	81	6	429	30	25	17	26	1.97
51018733--51019108	150	2.5	150	98	0	725	30	25	17	26	1.97
51019367--51019420	27	2.0	27	85	0	72	38	14	7	38	1.75
51019697--51019755	30	2.0	30	90	6	93	30	18	8	42	1.80
51024520--51024859	170	2.0	170	93	0	581	32	27	17	23	1.96
51026754--51026794	21	1.9	22	85	5	57	31	24	4	39	1.76
51028654--51028765	43	2.6	44	77	8	124	33	22	18	25	1.97
51036777--51036805	11	2.6	11	100	0	58	55	17	0	27	1.42
51040935--51040981	25	2.0	25	83	8	62	27	14	4	53	1.60
51041242--51041507	46	6.0	46	84	9	309	21	22	15	39	1.91
51041421--51041496	38	2.0	38	100	0	152	23	26	18	31	1.97
51044513--51044775	134	2.0	134	94	0	463	36	18	12	33	1.88
51049681--51049858	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51049682--51049837	82	1.9	81	88	3	233	26	15	28	29	1.96
51049678--51049858	82	2.2	81	83	2	229	27	15	27	29	1.96
51057514--51057776	40	6.6	40	88	3	316	24	20	28	26	1.99
51057553--51057811	80	3.3	80	84	3	247	25	20	28	25	1.99
51059355--51059398	20	2.2	20	88	8	63	43	22	27	6	1.78
51062585--51062656	35	2.1	35	89	0	108	34	6	9	48	1.63
51063406--51063443	18	2.1	19	90	5	60	68	0	2	28	1.03
51063501--51063536	17	2.2	16	90	5	54	11	8	5	75	1.19
51072155--51072199	23	2.0	23	86	0	63	8	8	24	57	1.57
51073514--51073561	20	2.4	20	96	0	87	27	20	27	25	1.99
51082453--51082494	8	5.2	8	85	0	57	42	21	26	9	1.83
51082453--51082494	16	2.6	16	92	0	66	42	21	26	9	1.83
51082908--51083019	27	4.2	26	81	14	120	16	25	23	35	1.94
51082908--51083019	54	2.1	54	85	6	147	16	25	23	35	1.94
51082980--51083330	175	2.0	175	100	0	702	19	14	30	35	1.92
51088139--51088179	20	2.0	20	90	9	66	29	9	14	46	1.77
51097722--51097766	21	2.2	21	84	7	58	55	2	4	37	1.32
51105274--51105333	18	3.3	18	68	25	54	35	28	10	26	1.89
51105252--51105357	36	2.9	36	79	5	124	32	26	11	30	1.91
51114294--51114341	25	2.0	25	84	12	64	27	2	8	62	1.35
51124454--51124480	13	2.1	13	100	0	54	14	37	33	14	1.88
51124568--51124595	13	2.2	13	100	0	56	25	35	25	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51130325--51130420	28	3.4	28	91	1	147	28	34	13	23	1.93
51130320--51130438	28	4.2	29	86	4	84	29	33	12	24	1.92
51139474--51139522	22	2.3	22	92	3	82	22	12	22	42	1.86
51143447--51143622	48	3.7	48	87	0	262	23	16	30	28	1.96
51143447--51143650	96	2.1	97	85	1	268	24	16	29	29	1.97
51143628--51143717	42	2.1	42	87	0	126	28	13	24	33	1.93
51147851--51148140	145	2.0	145	100	0	580	34	20	14	31	1.92
51166805--51166987	40	4.6	39	81	6	170	24	20	27	26	1.99
51166841--51167022	79	2.3	80	79	3	190	26	20	27	25	1.99
51169790--51169973	93	2.0	94	93	1	316	32	15	14	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186