genome.fa.s20.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  150  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49560901--49560961	30	2.0	30	83	0	77	31	22	8	37	1.84
49563901--49564120	49	4.6	48	77	7	216	24	29	20	25	1.99
49563851--49564131	93	3.0	93	79	7	266	25	29	19	25	1.98
49576449--49576491	19	2.5	17	82	14	52	9	23	41	25	1.84
49583986--49584075	34	2.6	36	77	7	105	40	36	10	13	1.78
49583986--49584077	35	2.6	34	75	10	96	40	35	9	14	1.79
49586180--49586305	35	3.6	35	86	0	180	29	11	27	31	1.91
49595733--49595894	35	4.6	35	88	2	218	30	8	25	35	1.85
49595733--49595894	70	2.3	69	90	4	245	30	8	25	35	1.85
49596313--49596367	27	2.0	27	96	0	101	47	0	16	36	1.47
49597781--49597942	35	4.6	35	88	2	218	30	8	25	35	1.85
49597781--49597942	70	2.3	69	90	4	245	30	8	25	35	1.85
49598361--49598415	27	2.0	27	96	0	101	47	0	16	36	1.47
49600216--49600273	27	2.1	27	100	0	116	31	22	10	36	1.88
49605918--49606018	46	2.1	49	82	12	131	33	4	28	32	1.79
49612252--49612289	18	2.1	18	95	0	67	42	47	2	7	1.46
49612266--49612290	13	1.9	13	100	0	50	40	48	0	12	1.40
49612315--49612355	6	6.5	6	83	10	55	78	2	2	17	0.98
49612315--49612356	20	2.1	20	86	0	57	78	2	2	16	0.96
49616714--49616777	31	2.1	30	88	8	94	57	14	3	25	1.51
49626555--49626592	19	2.0	19	94	0	67	31	23	10	34	1.89
49627249--49627318	31	2.3	31	97	0	131	21	15	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49629923--49629978	21	2.7	21	82	0	67	28	3	35	32	1.74
49630202--49630269	33	2.0	34	85	2	93	54	1	0	44	1.09
49636324--49636496	46	3.8	45	83	4	204	25	31	15	27	1.96
49636324--49636496	93	1.9	91	84	6	231	25	31	15	27	1.96
49641430--49641774	46	7.5	46	85	1	406	41	13	23	21	1.89
49641427--49641786	92	3.9	92	87	0	452	40	14	23	21	1.89
49641437--49641774	183	1.8	184	86	0	489	41	14	23	21	1.89
49641438--49641809	137	2.7	136	82	4	424	41	14	23	20	1.90
49645314--49645360	16	2.8	18	81	12	55	74	2	19	4	1.09
49645595--49645668	31	2.4	31	93	2	123	45	0	25	28	1.53
49646899--49646970	21	3.3	21	68	3	54	16	25	23	34	1.95
49653824--49653951	50	2.6	50	85	8	156	25	29	18	26	1.98
49653864--49654089	46	4.8	47	76	11	196	23	30	19	26	1.98
49659881--49659918	3	12.7	3	100	0	76	34	0	0	65	0.93
49659881--49659950	15	4.5	16	82	10	76	37	1	2	58	1.22
49660028--49660088	32	1.9	32	90	9	99	40	0	6	52	1.27
49660038--49660122	31	2.7	33	82	10	90	41	1	5	51	1.33
49664736--49664809	24	3.1	24	94	0	121	31	5	41	21	1.76
49665855--49665960	27	3.9	27	77	10	101	17	25	20	35	1.95
49665855--49665963	55	2.0	54	82	7	132	17	25	20	36	1.94
49670333--49670361	3	9.7	3	100	0	58	34	0	0	65	0.93
49670333--49670393	15	3.9	16	79	12	65	40	0	1	57	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49670471--49670531	32	1.9	31	87	9	88	40	0	8	50	1.32
49671098--49671202	41	2.6	41	92	0	165	24	18	24	32	1.97
49679738--49679775	17	2.2	17	90	0	58	68	5	5	21	1.29
49680098--49680159	31	2.0	31	100	0	124	35	19	16	29	1.93
49683789--49683865	39	2.0	39	84	5	102	32	18	23	25	1.97
49685535--49685712	27	6.6	27	84	3	205	29	28	15	26	1.96
49685556--49685711	82	1.9	81	88	3	233	29	28	15	26	1.96
49690209--49690440	56	4.1	56	98	0	446	45	9	21	22	1.81
49697330--49697354	13	1.9	13	100	0	50	16	36	40	8	1.77
49697529--49697576	23	2.1	23	100	0	96	29	37	16	16	1.91
49704892--49704970	37	2.1	37	90	0	122	25	31	18	24	1.98
49705089--49705550	47	9.7	47	93	2	773	29	30	7	32	1.85
49705089--49705550	190	2.4	190	94	0	802	29	30	7	32	1.85
49707605--49707721	40	2.9	40	89	0	171	29	27	19	23	1.98
49722743--49723081	168	2.0	168	97	0	642	38	22	7	31	1.82
49724293--49724459	56	2.9	57	86	1	237	30	24	16	28	1.96
49731917--49731944	10	2.8	10	100	0	56	35	10	32	21	1.88
49741168--49741193	13	2.0	13	100	0	52	15	23	38	23	1.92
49747496--49747551	30	1.9	28	85	7	76	12	30	3	53	1.55
49752304--49752443	68	2.1	68	94	0	244	22	24	17	35	1.96
49754204--49754783	289	2.0	290	97	0	1090	32	12	22	32	1.91
49760776--49760800	4	6.2	4	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49762247--49762420	45	3.8	47	75	8	162	44	10	21	22	1.84
49764319--49764730	46	9.0	46	97	0	736	23	23	14	38	1.92
49770925--49771110	45	4.1	45	91	0	246	41	11	22	24	1.87
49778471--49778648	27	6.6	27	83	3	205	26	15	28	29	1.96
49778472--49778627	82	1.9	81	88	3	233	26	15	28	29	1.96
49778468--49778648	82	2.2	81	83	2	229	27	15	27	29	1.96
49782403--49782580	27	6.6	27	82	3	196	26	15	28	29	1.96
49782403--49782580	54	3.3	55	82	5	218	26	15	28	29	1.96
49782404--49782559	82	1.9	81	88	3	233	26	15	28	29	1.96
49782400--49782580	82	2.2	81	83	2	229	26	15	28	29	1.96
49790467--49790644	27	6.6	27	83	3	205	26	15	28	29	1.96
49790468--49790623	82	1.9	81	88	3	233	26	15	28	29	1.96
49790464--49790644	82	2.2	81	83	2	229	27	15	27	29	1.96
49798806--49798860	18	3.1	18	89	0	74	40	10	23	25	1.87
49799196--49799302	27	4.0	27	76	9	110	38	14	15	30	1.89
49799286--49799378	27	3.5	26	85	5	114	24	18	16	40	1.90
49805053--49805097	21	2.1	21	83	0	54	44	0	22	33	1.53
49805234--49805297	22	2.9	22	76	4	76	12	25	20	42	1.87
49805737--49805772	16	2.2	16	100	0	72	38	0	13	47	1.44
49805962--49806002	20	2.0	20	100	0	82	46	4	9	39	1.58
49806119--49806154	18	2.0	18	88	0	54	33	5	16	44	1.71
49808624--49808656	11	2.9	11	95	4	57	63	9	18	9	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49811213--49811284	26	2.8	26	80	0	81	31	19	8	40	1.81
49813662--49813704	5	8.8	5	94	5	79	41	0	0	58	0.98
49820416--49820480	27	2.4	28	82	7	89	41	16	15	26	1.88
49820616--49820707	27	3.4	27	80	1	105	22	21	18	36	1.95
49827087--49827178	46	2.0	46	100	0	184	36	15	23	23	1.93
49827092--49827231	46	3.0	46	87	6	174	40	14	23	22	1.90
49829772--49829906	51	2.7	51	84	2	175	28	27	18	25	1.98
49829761--49829899	49	2.8	49	84	2	170	28	25	18	27	1.98
49831473--49831525	27	2.0	27	88	0	79	26	22	16	33	1.96
49831683--49831743	28	2.2	28	84	0	77	26	24	21	27	1.99
49837836--49838053	47	4.7	45	75	12	176	23	29	18	27	1.98
49837790--49838053	94	2.8	92	79	11	286	24	29	18	27	1.98
49838397--49838454	30	1.9	30	92	0	98	32	25	8	32	1.86
49844314--49844368	23	2.6	21	80	11	60	20	32	30	16	1.94
49845384--49845435	27	2.0	26	84	3	68	34	21	26	17	1.95
49847353--49847562	47	4.6	45	78	11	187	25	30	17	26	1.97
49847353--49847523	91	1.8	94	88	7	269	23	31	18	26	1.97
49850662--49850750	27	3.1	27	73	17	81	35	26	3	33	1.73
49854318--49854347	13	2.3	13	100	0	60	20	6	13	60	1.55
49855224--49855473	82	3.1	81	63	24	186	45	3	4	46	1.39
49855227--49855536	157	2.0	157	94	0	548	47	5	3	43	1.42
49855666--49855717	16	3.2	16	97	0	95	38	34	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49869092--49869212	46	2.6	46	87	7	158	23	31	19	25	1.98
49871862--49871892	16	1.9	16	93	0	53	35	22	0	41	1.54
49871859--49871898	20	2.0	20	85	0	53	37	22	0	40	1.54
49871938--49871974	18	2.1	18	100	0	74	43	16	5	35	1.71
49872173--49872290	53	2.2	55	80	6	134	22	26	16	34	1.95
49882429--49882498	28	2.5	29	81	4	81	32	28	11	27	1.91
49887819--49888218	202	2.0	202	98	0	773	31	15	20	33	1.94
49891129--49891244	43	2.7	43	83	2	135	22	16	27	33	1.95
49905481--49905520	19	1.9	19	85	14	53	45	0	0	55	0.99
49905484--49905517	16	2.2	15	89	5	50	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186