genome.fa.s20.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  103  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33812463--33812527	30	2.2	29	83	5	78	29	10	1	58	1.41
33824525--33824696	79	2.2	79	84	3	220	25	21	27	25	1.99
33824472--33824694	40	5.6	39	81	8	209	25	21	27	25	1.99
33824552--33824729	79	2.2	80	80	3	191	25	21	28	24	1.99
33828532--33829413	29	30.5	29	98	0	1671	34	27	10	27	1.90
33845504--33846360	64	13.4	64	100	0	1714	27	20	14	37	1.91
33850891--33850953	33	1.9	33	93	0	108	50	17	3	28	1.61
33851089--33851153	30	2.2	29	83	5	78	29	10	1	58	1.41
33865942--33866042	45	2.2	46	92	3	170	53	3	4	37	1.41
33866307--33866392	36	2.4	37	81	13	106	66	3	1	29	1.16
33866307--33866383	36	2.1	38	86	11	108	67	3	1	27	1.16
33869382--33869543	43	3.8	43	74	14	154	22	17	27	31	1.97
33871648--33871698	22	2.3	21	90	6	75	29	19	27	23	1.98
33872742--33872822	35	2.3	35	79	12	87	40	20	17	20	1.91
33872802--33872859	25	2.3	25	96	3	107	46	15	18	18	1.84
33877153--33877206	18	3.1	17	81	7	63	77	0	7	14	0.97
33877157--33877202	24	1.9	24	90	0	74	80	0	8	10	0.91
33877788--33877839	20	2.6	19	82	11	52	15	34	28	21	1.94
33882035--33882092	30	1.9	30	89	6	91	17	29	32	20	1.95
33882525--33882562	20	1.9	20	94	0	67	36	5	7	50	1.54
33890467--33890530	32	2.1	32	91	5	105	59	0	0	40	0.97
33890576--33890661	16	5.6	16	68	13	54	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33890555--33890627	26	2.8	27	75	10	80	46	0	0	53	1.00
33890532--33890671	61	2.3	58	89	4	199	45	2	0	51	1.18
33908590--33908624	17	2.1	16	89	5	52	20	22	31	25	1.98
33910470--33910519	6	8.5	6	86	4	66	78	4	0	18	0.91
33912192--33912229	8	4.8	8	87	12	60	76	0	10	13	1.02
33912188--33912235	16	2.6	19	78	21	66	75	0	10	14	1.06
33912184--33912252	24	2.7	24	80	17	77	73	0	8	17	1.07
33912188--33912244	12	4.9	12	77	12	57	73	0	8	17	1.07
33917757--33917856	49	2.0	49	94	0	173	29	15	19	37	1.91
33919905--33919952	24	2.0	24	95	0	87	31	12	18	37	1.88
33928297--33928339	18	2.4	18	81	11	52	53	6	0	39	1.28
33934276--33934323	21	2.2	22	78	14	55	25	4	8	62	1.41
33937196--33937247	21	2.5	21	90	0	77	30	25	34	9	1.88
33937194--33937258	21	3.1	21	86	0	67	26	24	35	13	1.93
33939023--33939075	24	2.2	24	83	6	63	33	20	26	18	1.96
33946025--33946053	14	2.1	14	100	0	58	20	20	13	44	1.85
33947691--33947773	35	2.4	35	85	0	103	33	27	9	28	1.88
33947712--33947785	35	2.1	35	92	0	121	29	31	13	25	1.94
33948588--33949080	57	8.8	57	79	4	383	31	19	13	36	1.90
33948598--33949080	114	4.3	114	79	5	502	31	18	13	36	1.90
33948769--33948916	29	5.2	29	64	21	96	31	17	12	38	1.88
33948595--33949080	171	2.9	169	81	6	540	31	18	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33948958--33949059	51	2.0	51	84	3	134	30	20	15	33	1.94
33951883--33951997	50	2.3	50	84	3	140	24	16	28	30	1.96
33957618--33957760	50	2.8	51	83	1	180	24	19	27	28	1.99
33957731--33957854	51	2.4	51	82	5	144	28	16	27	28	1.97
33961846--33962119	39	7.0	38	89	3	298	30	29	21	18	1.97
33970766--33970805	20	2.0	21	85	9	57	47	12	12	27	1.77
33971197--33971243	15	3.3	13	88	11	58	72	0	2	25	0.96
33972322--33972385	30	2.1	30	97	0	119	15	26	34	23	1.95
33974819--33974925	53	2.0	53	98	0	205	49	16	12	21	1.78
33975365--33975452	26	3.4	26	95	3	151	29	17	12	40	1.86
33975599--33975628	6	5.0	6	100	0	60	16	16	0	66	1.25
33978887--33978942	28	1.9	28	85	7	76	12	12	1	73	1.18
33978885--33978949	30	2.2	28	78	5	76	10	10	1	76	1.08
33987503--33987593	28	3.2	28	78	6	85	35	1	15	48	1.52
33997693--33997739	23	2.0	23	95	0	85	29	14	19	36	1.92
34002031--34002365	146	2.3	146	81	3	397	37	10	14	37	1.81
34006864--34006910	24	2.0	24	87	4	69	14	10	0	74	1.07
34011574--34011644	29	2.4	30	79	11	74	38	2	4	54	1.34
34018789--34018821	13	2.6	13	90	4	50	69	0	0	30	0.88
34020270--34020357	35	2.5	35	88	5	124	31	11	15	40	1.83
34024714--34024774	31	2.0	31	100	0	122	16	26	0	57	1.39
34027937--34027981	3	15.0	3	100	0	90	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34028292--34028321	5	5.8	5	92	7	51	20	0	0	80	0.72
34029060--34029089	5	5.8	5	92	7	51	80	0	0	20	0.72
34029671--34029771	42	2.4	42	84	0	130	24	17	20	36	1.94
34031094--34031125	14	2.3	14	100	0	64	34	31	0	34	1.58
34031141--34031188	21	2.2	22	92	7	89	41	16	12	29	1.85
34034085--34034135	17	3.1	17	66	11	52	17	27	39	15	1.90
34034484--34034524	6	6.5	6	83	10	55	17	0	4	78	0.93
34037406--34037540	35	3.7	37	80	10	161	31	11	22	34	1.91
34037409--34037497	40	2.4	34	85	10	97	33	8	24	32	1.87
34051064--34051091	8	3.5	8	100	0	56	39	14	0	46	1.44
34052455--34052544	40	2.2	40	80	3	101	33	18	21	26	1.96
34052967--34053144	7	24.9	7	68	12	67	21	0	34	42	1.58
34054854--34054970	30	3.9	29	77	11	94	44	2	22	30	1.66
34054869--34054970	30	3.4	30	84	2	134	44	2	22	30	1.68
34054841--34054970	60	2.2	59	80	4	154	43	2	20	33	1.65
34055243--34055460	54	4.1	55	86	8	315	37	16	16	29	1.90
34055243--34055452	106	2.0	104	90	3	332	37	16	16	30	1.91
34055439--34055473	14	2.5	14	95	0	61	60	0	17	22	1.37
34055563--34055810	85	2.8	87	81	10	281	36	18	18	26	1.94
34055723--34055756	16	2.1	16	88	0	50	64	5	11	17	1.45
34055563--34055817	91	2.9	88	82	9	315	36	18	18	26	1.93
34055740--34056058	123	2.6	123	94	1	548	36	21	14	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34055898--34056249	192	1.8	193	98	0	688	34	21	14	29	1.92
34056091--34056975	121	7.3	121	99	0	1761	36	22	14	26	1.92
34079716--34079867	59	2.6	59	89	4	229	42	7	11	38	1.70
34079834--34080184	17	21.3	17	69	14	148	44	11	8	35	1.72
34079716--34079877	57	2.8	58	82	3	150	42	8	11	38	1.70
34079810--34080105	147	2.0	147	96	1	540	41	11	8	38	1.72
34079833--34080184	147	2.4	143	85	8	449	44	11	8	35	1.72
34080117--34080280	35	4.6	36	73	10	124	45	10	11	32	1.75
34080146--34080282	73	1.9	72	83	4	177	42	10	11	35	1.77
34079980--34080294	17	18.3	18	71	15	152	44	11	10	33	1.74
34080127--34080323	17	10.9	17	70	16	87	42	11	12	34	1.78
34081713--34081960	123	2.0	123	100	0	496	37	9	13	39	1.78
34087314--34087351	19	2.0	20	84	5	51	23	7	0	68	1.16
34092234--34092271	6	6.3	6	84	9	51	28	0	0	71	0.87
34092240--34092290	12	3.9	13	74	7	50	27	0	3	68	1.07
34097253--34097308	19	2.9	19	79	12	69	67	3	0	28	1.07
34103020--34103053	17	2.1	17	88	5	52	41	11	2	44	1.56
34108059--34108092	3	11.3	3	100	0	68	32	0	0	67	0.91
34109809--34109851	22	2.0	22	86	13	63	20	20	39	18	1.93
34110932--34111144	47	4.6	47	73	13	138	23	32	17	26	1.96
34111740--34111778	18	2.2	18	100	0	78	64	12	5	17	1.46
34118659--34118785	61	2.1	61	98	0	245	38	12	5	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34126762--34126807	21	2.3	20	78	14	51	45	17	6	30	1.73
34129208--34129385	27	6.6	27	83	3	205	26	15	28	29	1.96
34129209--34129364	82	1.9	81	88	3	233	26	15	28	29	1.96
34129205--34129385	82	2.2	81	83	2	229	27	15	27	29	1.96
34137041--34137303	40	6.6	40	88	3	316	24	20	28	26	1.99
34137080--34137338	80	3.3	80	84	3	247	25	20	28	25	1.99
34140954--34141079	46	2.8	44	80	9	137	23	19	32	25	1.97
34142035--34142072	10	3.8	10	83	13	51	28	31	18	21	1.97
34142034--34142071	20	1.9	20	94	0	67	28	34	18	18	1.95
34142035--34142095	20	3.0	20	83	9	63	29	27	14	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186