genome.fa.s20.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  140  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46273934--46274079	79	1.9	80	84	4	199	38	19	1	41	1.60
46274418--46274450	16	2.0	17	88	5	50	36	21	0	42	1.53
46275065--46275117	28	2.0	28	82	13	69	50	1	0	47	1.12
46275076--46275124	15	3.4	15	74	25	52	51	0	0	48	1.00
46275368--46275420	16	3.5	16	80	12	67	52	5	0	41	1.25
46275986--46276029	22	2.0	22	86	0	61	52	0	0	47	1.00
46276048--46276091	13	3.3	13	78	15	54	54	0	0	45	0.99
46277869--46277901	18	1.9	17	88	11	50	33	0	0	66	0.92
46280563--46280591	8	3.8	8	90	9	51	10	0	0	89	0.48
46280562--46280591	15	2.0	15	100	0	60	13	0	0	86	0.57
46281339--46282700	454	3.0	454	99	0	2670	35	18	15	30	1.92
46282918--46282982	27	2.4	27	78	0	76	24	29	12	33	1.92
46283128--46283191	27	2.4	27	83	0	92	32	23	14	29	1.94
46284982--46285084	28	3.6	28	83	7	93	28	29	12	30	1.93
46285008--46285113	28	3.8	28	78	5	117	28	29	14	28	1.95
46285037--46285221	58	3.3	57	78	3	194	28	21	17	32	1.96
46285129--46285220	28	3.2	28	69	14	80	30	16	19	33	1.94
46297867--46298016	43	3.5	43	86	1	176	28	15	24	31	1.95
46299878--46299980	37	2.8	37	95	0	179	25	32	19	23	1.98
46300121--46301003	48	18.4	48	99	0	1748	31	29	6	33	1.82
46300981--46301024	20	2.2	20	95	0	79	36	22	0	40	1.54
46300933--46301072	68	2.1	68	94	0	244	32	25	4	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46300885--46301120	116	2.0	116	95	0	427	32	26	5	36	1.78
46301001--46301312	48	6.5	48	97	0	561	32	27	5	34	1.80
46304724--46304868	43	3.4	42	77	11	143	32	22	17	26	1.97
46304720--46304861	44	3.3	42	75	15	148	31	22	18	27	1.97
46310078--46310131	26	2.1	26	100	0	108	25	20	14	38	1.91
46312610--46312668	30	1.9	31	86	3	84	45	1	22	30	1.62
46318373--46318545	46	3.7	46	77	10	163	23	19	26	30	1.98
46318370--46318540	93	1.8	93	87	0	252	23	19	26	29	1.98
46321964--46322237	49	5.5	49	91	1	413	24	18	28	28	1.98
46325258--46325313	15	3.7	15	79	15	71	10	14	12	62	1.55
46330779--46330953	46	3.8	46	79	15	207	29	29	20	21	1.98
46330787--46330957	93	1.8	93	93	0	297	29	29	20	21	1.98
46330784--46330973	46	4.1	45	72	18	151	29	28	20	21	1.98
46333101--46333172	24	2.9	24	81	4	90	37	19	23	19	1.94
46335293--46335416	39	3.2	39	89	4	178	33	19	30	16	1.94
46335303--46335416	40	2.9	40	93	3	187	33	19	31	15	1.93
46335303--46335403	20	5.1	20	66	13	66	32	18	33	14	1.92
46342918--46343095	27	6.6	27	79	6	155	29	28	16	26	1.97
46342939--46343094	82	1.9	81	84	3	206	28	28	16	26	1.97
46346217--46346430	53	4.0	53	81	6	245	33	16	26	23	1.96
46346219--46346430	54	4.0	52	83	7	239	33	16	25	24	1.96
46348835--46348883	20	2.5	20	86	0	62	24	10	16	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46349293--46349363	37	1.9	37	88	0	106	29	8	29	32	1.87
46375179--46375236	26	2.2	26	81	6	64	32	1	0	65	1.03
46381406--46381485	18	4.4	18	87	0	115	16	32	28	22	1.95
46381406--46381485	36	2.2	36	93	0	133	16	32	28	22	1.95
46383325--46383458	52	2.6	51	85	4	182	34	26	13	25	1.93
46383325--46383454	50	2.6	50	86	4	172	35	27	12	24	1.91
46391255--46391288	5	6.8	5	100	0	68	61	38	0	0	0.96
46392110--46392168	22	2.8	20	76	16	57	45	5	1	47	1.34
46392381--46392419	7	5.6	7	100	0	78	53	0	0	46	1.00
46394530--46394602	32	2.5	27	72	19	74	24	4	20	50	1.65
46394543--46394603	32	1.9	32	90	6	97	26	4	19	49	1.69
46395524--46395593	35	2.0	35	100	0	140	28	8	20	42	1.81
46395629--46395715	22	3.9	22	79	14	97	27	5	20	45	1.74
46395651--46395739	46	1.9	46	88	0	133	29	6	17	46	1.74
46395595--46395723	68	1.9	68	90	0	204	28	6	18	45	1.75
46400346--46400377	14	2.3	14	100	0	64	31	46	15	6	1.71
46405337--46405604	40	6.7	40	94	0	455	22	26	20	30	1.98
46408823--46408854	14	2.3	14	100	0	64	31	46	15	6	1.71
46410681--46410757	25	3.1	25	92	0	127	20	18	18	42	1.89
46416907--46416953	19	2.5	19	96	0	85	27	23	10	38	1.88
46418235--46418279	19	2.3	19	84	3	54	40	8	0	51	1.33
46418291--46418322	14	2.3	14	94	0	55	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46423440--46423533	42	2.3	41	86	1	134	26	12	27	32	1.93
46423461--46423568	42	2.6	42	84	0	126	29	15	26	27	1.96
46425530--46425623	42	2.3	41	86	1	134	26	12	27	32	1.93
46425551--46425658	42	2.6	42	84	0	126	29	15	26	27	1.96
46425841--46427284	722	2.0	722	100	0	2888	33	11	18	35	1.87
46428031--46428285	55	4.8	54	80	9	269	36	16	25	21	1.94
46428038--46428238	108	1.8	110	88	4	309	35	16	25	22	1.95
46438772--46439018	55	4.6	54	80	7	240	36	17	25	21	1.94
46438779--46438979	108	1.8	110	87	4	300	34	16	25	22	1.95
46439218--46439248	16	1.9	16	93	0	53	41	0	22	35	1.54
46442316--46442395	38	2.1	38	90	0	124	20	22	28	28	1.98
46442388--46442542	43	3.6	43	100	0	310	9	26	34	29	1.88
46448026--46448110	37	2.3	37	85	0	107	38	25	7	28	1.82
46448319--46448444	41	3.1	41	88	0	189	23	27	20	28	1.99
46453182--46453460	41	6.8	41	96	0	477	30	20	22	27	1.98
46453675--46453738	33	2.0	32	90	3	101	26	9	25	39	1.86
46453682--46453755	33	2.3	33	80	2	87	28	8	25	37	1.84
46468674--46468752	40	2.0	40	87	0	113	25	20	29	25	1.99
46473620--46473739	48	2.5	48	83	2	125	27	15	27	30	1.96
46481903--46481964	32	1.9	32	83	0	79	33	9	14	41	1.79
46485046--46485153	26	4.2	26	93	0	189	32	7	24	36	1.83
46489276--46489330	16	3.4	16	80	5	67	38	9	23	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46489631--46489682	21	2.4	22	84	12	63	61	1	0	36	1.07
46489658--46489727	34	2.1	34	100	0	140	50	5	0	44	1.26
46500110--46500139	14	2.1	14	100	0	60	53	20	20	6	1.67
46500986--46501010	6	4.2	6	100	0	50	48	0	36	16	1.46
46503495--46503666	46	3.7	47	79	9	199	28	20	27	23	1.99
46504885--46504923	21	1.9	21	94	5	71	10	35	30	23	1.88
46509217--46509272	20	2.9	19	84	7	69	42	0	0	57	0.99
46510970--46510997	7	4.0	7	100	0	56	14	0	0	85	0.59
46510970--46511009	13	3.0	13	88	3	53	20	0	0	80	0.72
46515509--46515556	25	1.9	25	95	0	87	33	20	18	27	1.96
46517543--46517601	28	2.1	27	84	3	73	23	32	20	23	1.98
46519275--46519585	46	6.6	47	71	14	171	23	27	20	28	1.99
46519275--46519590	140	2.2	142	78	8	333	23	26	20	29	1.99
46537437--46537621	40	4.7	40	82	6	207	24	22	27	24	2.00
46537490--46537654	79	2.1	79	82	6	192	26	20	27	25	1.99
46540817--46541033	46	4.6	46	78	11	217	28	19	30	21	1.98
46540812--46541080	47	5.8	45	75	13	190	28	19	29	21	1.98
46540812--46541074	140	1.9	140	83	4	343	29	19	29	22	1.98
46548302--46548510	46	4.5	46	76	13	187	28	17	30	23	1.97
46548292--46548565	47	5.9	47	76	9	206	28	18	29	23	1.97
46548292--46548557	140	1.9	140	80	4	313	29	17	29	23	1.97
46551142--46551279	56	2.5	57	89	4	210	32	22	14	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46552435--46552463	14	2.0	15	93	6	51	51	20	0	27	1.47
46556029--46556059	15	2.1	15	93	0	53	19	0	25	54	1.44
46556672--46556806	56	2.4	56	94	0	243	27	16	22	33	1.95
46557974--46558018	24	1.9	23	86	4	63	42	0	15	42	1.47
46557984--46558023	20	2.1	19	85	4	53	42	0	12	45	1.42
46561492--46561638	73	2.0	73	98	0	285	33	10	14	41	1.80
46564868--46564899	16	2.0	16	93	0	55	25	15	15	43	1.86
46566655--46566966	48	6.5	48	73	8	199	27	18	28	25	1.98
46566797--46566967	49	3.5	47	72	7	146	26	18	29	25	1.98
46566745--46566964	98	2.3	95	81	10	250	27	19	28	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186