genome.fa.s20.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  38  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11314111--11314306	88	2.2	89	85	2	252	31	21	19	28	1.97
11314374--11314646	44	5.7	44	70	21	181	26	21	20	30	1.98
11314406--11314646	54	4.8	53	70	20	171	26	21	19	31	1.98
11314384--11314655	96	2.7	98	88	5	395	27	21	19	31	1.98
11315047--11315188	46	3.1	46	82	0	167	25	25	14	35	1.93
11315592--11315695	53	2.0	53	90	3	165	52	9	16	21	1.71
11316058--11316088	15	2.1	15	100	0	62	0	0	12	87	0.55
11319439--11319483	19	2.3	20	88	7	67	42	13	22	22	1.88
11321426--11321700	3	92.7	3	72	10	183	61	1	6	29	1.32
11321468--11321589	22	5.7	22	70	16	71	65	3	5	25	1.30
11321599--11321694	43	2.3	42	82	15	110	56	1	6	36	1.32
11324542--11324592	18	2.7	19	81	3	59	39	17	23	19	1.92
11327845--11327998	76	2.0	76	92	2	256	31	5	20	41	1.76
11329849--11329879	12	2.6	12	94	0	53	22	41	29	6	1.78
11339734--11339796	21	2.9	21	75	9	63	33	25	26	14	1.94
11360230--11360287	29	2.0	28	90	3	89	29	17	24	29	1.97
11361182--11361227	3	17.0	3	79	20	57	32	0	0	67	0.91
11361181--11361227	8	5.9	8	94	0	76	34	0	0	65	0.93
11361341--11361395	5	11.4	5	88	7	87	40	0	1	58	1.09
11365156--11365235	31	2.5	31	91	2	133	21	28	18	31	1.97
11365304--11365543	87	2.8	86	90	1	374	25	18	30	25	1.98
11365304--11365543	130	1.9	128	90	1	381	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11365294--11365543	43	5.8	43	87	1	358	26	18	30	24	1.98
11365617--11365696	31	2.5	31	81	2	88	58	18	6	16	1.58
11371584--11371642	9	6.6	9	86	0	82	28	1	23	45	1.63
11371585--11371642	27	2.1	27	93	0	98	29	1	22	46	1.62
11371641--11372074	241	1.8	241	98	0	850	32	14	18	33	1.92
11375285--11375394	39	2.8	40	91	2	186	17	22	18	41	1.90
11375406--11375462	22	2.7	20	77	22	62	33	1	1	63	1.15
11375820--11375896	29	2.6	30	76	13	79	40	41	0	18	1.50
11375937--11375987	14	3.6	14	86	0	66	37	49	0	13	1.43
11375926--11375981	21	2.6	21	88	2	76	35	48	0	16	1.46
11375937--11376017	21	3.9	21	80	0	54	38	44	1	16	1.55
11375985--11376066	14	5.8	14	74	8	58	45	28	2	24	1.66
11376006--11376066	7	8.6	7	80	3	59	49	24	1	24	1.60
11376006--11376056	14	3.6	14	86	5	66	49	25	0	25	1.51
11376010--11376066	22	2.7	22	86	5	82	47	26	1	24	1.62
11376423--11376472	24	2.1	24	92	0	82	42	2	4	52	1.31
11377033--11377186	80	1.9	80	100	0	308	31	7	20	40	1.81
11377157--11377247	40	2.2	42	82	11	116	18	18	21	40	1.91
11382637--11382687	21	2.4	21	96	0	93	23	3	19	52	1.62
11382637--11382701	21	3.1	21	88	4	69	24	6	18	50	1.69
11387193--11387219	13	2.1	13	100	0	54	48	14	14	22	1.81
11389028--11389061	17	1.9	18	88	5	52	20	5	2	70	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11393748--11393777	8	3.9	8	91	8	53	10	10	0	80	0.92
11401087--11401152	16	3.8	16	76	21	62	28	7	0	63	1.21
11401100--11401140	21	2.0	21	100	0	82	24	12	0	63	1.28
11406303--11406343	21	2.0	21	90	0	64	19	29	21	29	1.98
11410083--11410136	22	2.5	22	84	6	65	50	12	11	25	1.74
11410399--11410433	17	1.9	19	88	11	56	20	2	8	68	1.29
11411745--11411783	14	2.8	14	96	0	69	46	15	7	30	1.74
11412132--11412216	27	3.1	27	72	3	82	23	30	25	20	1.98
11415480--11415513	16	2.1	16	88	0	50	50	14	17	17	1.79
11419030--11419164	40	3.4	40	85	2	182	30	27	19	22	1.98
11423762--11423936	40	4.4	40	91	0	278	30	30	17	21	1.96
11425871--11425911	21	2.0	21	90	0	64	29	21	29	19	1.98
11441908--11441957	18	2.9	18	74	14	52	50	0	0	50	1.00
11445253--11445365	42	2.7	42	87	4	156	27	25	15	31	1.95
11445486--11445603	31	3.8	31	91	0	182	25	27	20	27	1.99
11445579--11445755	50	3.5	49	84	5	228	25	23	16	34	1.95
11448071--11448121	10	4.2	12	80	19	61	21	0	1	76	0.88
11448069--11448123	23	2.4	23	88	11	87	23	0	1	74	0.91
11449457--11449490	17	2.0	17	94	0	59	70	2	0	26	1.01
11460938--11460972	5	7.0	5	93	0	61	20	2	0	77	0.90
11462010--11462045	18	1.9	19	88	5	56	69	2	5	22	1.22
11461986--11462080	48	2.0	47	95	2	172	60	7	8	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11462552--11462586	18	1.9	18	88	11	54	57	0	2	40	1.14
11466765--11466805	21	2.0	21	90	0	64	19	29	21	29	1.98
11470249--11470295	19	2.5	19	82	6	51	36	2	10	51	1.49
11474442--11474500	10	5.9	10	77	15	68	67	1	8	22	1.26
11474442--11474499	30	1.9	30	89	6	91	67	1	8	22	1.27
11485717--11485817	46	2.2	46	91	5	168	37	12	22	26	1.91
11486127--11486158	17	1.9	17	93	6	57	50	0	12	37	1.41
11489604--11489632	14	2.1	14	100	0	58	31	6	20	41	1.79
11491235--11491300	26	2.5	26	82	0	87	36	19	7	36	1.81
11501852--11501889	11	3.2	12	85	11	51	63	0	0	36	0.95
11504179--11504289	55	2.0	55	100	0	222	44	1	14	39	1.56
11506873--11506997	60	2.1	60	83	5	155	44	4	8	41	1.56
11507700--11507729	15	2.1	15	93	6	53	33	43	10	13	1.77
11507697--11507735	14	2.9	13	82	17	53	38	38	10	12	1.78
11507704--11507783	20	3.9	20	73	4	61	35	40	10	15	1.80
11509104--11509153	25	2.1	23	85	14	66	70	14	12	4	1.31
11510066--11510168	25	4.0	25	75	5	89	36	7	1	53	1.41
11524905--11525116	46	4.6	47	76	7	170	25	17	31	24	1.97
11525057--11525164	47	2.3	46	87	6	148	24	16	30	28	1.96
11527905--11527944	18	2.2	19	90	4	64	20	5	0	75	0.99
11527939--11528044	46	2.4	47	78	16	118	43	0	2	53	1.15
11527952--11528036	23	3.8	22	75	18	77	45	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11528031--11528074	23	2.0	22	86	4	61	47	0	0	52	1.00
11528027--11528074	22	2.3	21	80	16	55	50	0	0	50	1.00
11528126--11528166	21	2.0	21	85	9	57	39	0	2	58	1.11
11528472--11528520	16	3.0	17	76	11	57	53	0	6	40	1.26
11528985--11529049	20	3.2	20	72	8	69	36	9	3	50	1.50
11533712--11533752	18	2.3	18	95	0	73	17	0	24	58	1.38
11534017--11534074	17	3.4	17	85	2	71	15	0	31	53	1.42
11534207--11534521	126	2.5	126	92	1	499	38	16	16	28	1.91
11536277--11536332	25	2.2	25	93	0	94	39	10	33	16	1.83
11538702--11538744	18	2.4	18	88	0	59	44	9	27	18	1.80
11538799--11538864	30	2.2	31	83	2	80	9	19	42	28	1.82
11540417--11540462	11	4.4	11	81	8	51	45	0	26	28	1.54
11541058--11541127	17	3.9	16	74	20	59	68	0	2	28	1.04
11541075--11541127	19	2.7	19	75	13	63	67	0	3	28	1.07
11541184--11541243	29	2.1	29	96	0	111	31	16	20	31	1.95
11541367--11541550	10	18.9	10	66	15	66	29	4	2	63	1.28
11541439--11541551	10	11.5	10	73	12	92	30	2	0	66	1.11
11541438--11541557	9	12.6	9	72	10	78	30	2	0	65	1.11
11541438--11541549	19	5.8	19	76	9	93	30	2	0	66	1.12
11541430--11541540	29	3.8	29	79	4	107	32	2	0	64	1.07
11542881--11543004	30	4.1	30	91	1	194	25	23	6	44	1.77
11542891--11542998	15	7.2	15	65	12	69	25	21	7	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11544656--11544697	21	2.0	21	95	0	75	28	26	4	40	1.76
11547917--11547976	19	3.1	19	76	17	61	43	0	1	55	1.10
11553388--11553433	22	2.1	22	95	0	83	32	8	21	36	1.84
11560290--11560435	72	2.0	72	94	0	256	26	20	16	36	1.93
11562093--11562171	42	1.9	41	82	7	97	32	7	7	51	1.58
11572162--11572379	39	5.6	39	88	0	283	14	26	22	37	1.92
11572670--11572708	19	2.1	19	100	0	78	43	5	15	35	1.69
11573891--11573936	20	2.3	20	88	0	65	41	17	6	34	1.75
11576286--11576336	25	2.0	25	100	0	102	56	15	19	7	1.63
11578661--11578693	16	2.1	16	94	0	57	39	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186