genome.fa.s20.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  170  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56534984--56535050	34	2.0	34	93	0	116	38	17	8	34	1.82
56543096--56543606	205	2.5	205	93	0	860	30	18	21	29	1.97
56543339--56544051	289	2.5	288	89	1	1088	30	17	21	29	1.96
56547296--56547358	31	2.0	31	100	0	126	41	9	15	33	1.80
56550792--56550816	12	2.1	12	100	0	50	52	16	0	32	1.44
56556090--56556252	42	3.9	42	83	4	168	28	25	15	30	1.96
56562310--56562377	27	2.5	27	90	4	102	30	20	13	35	1.91
56562498--56562585	27	3.3	27	75	0	104	30	21	11	36	1.89
56562470--56562591	54	2.3	54	85	2	156	27	23	11	36	1.90
56569819--56569889	33	2.2	33	87	5	101	43	4	0	52	1.20
56569910--56569944	9	4.0	9	85	7	54	51	11	0	37	1.38
56569904--56569941	17	2.3	17	95	4	69	50	10	0	39	1.37
56569937--56570037	27	3.8	26	75	16	89	63	0	4	31	1.16
56569930--56570087	15	10.9	14	73	20	96	60	1	5	32	1.26
56569930--56570013	26	3.0	28	80	16	95	61	1	3	33	1.20
56569930--56570084	8	18.9	8	67	26	60	60	1	5	32	1.27
56570190--56571094	457	2.0	457	97	0	1720	34	16	20	27	1.94
56574025--56574316	149	2.0	149	99	0	575	43	21	16	18	1.88
56576391--56576421	15	2.1	15	100	0	62	19	12	0	67	1.22
56580822--56580882	25	2.4	25	81	8	61	40	3	0	55	1.16
56580906--56580949	22	2.0	22	86	0	61	52	0	0	47	1.00
56580969--56581010	13	2.9	14	80	13	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56580973--56581009	16	2.3	16	86	13	58	59	0	0	40	0.97
56581557--56581594	14	2.7	14	91	0	58	34	15	7	42	1.76
56581770--56581805	18	2.0	18	100	0	72	55	16	16	11	1.68
56584216--56584259	23	2.0	21	83	16	54	27	0	11	61	1.30
56584221--56584264	17	2.6	17	82	7	54	29	0	11	59	1.32
56586570--56586615	20	2.2	20	84	3	65	71	8	2	17	1.21
56586576--56586614	20	2.0	20	94	0	69	69	10	0	20	1.17
56587328--56587372	22	2.0	22	82	0	54	22	0	33	44	1.53
56587333--56587367	15	2.4	15	90	4	54	20	0	34	45	1.51
56587429--56587485	14	4.0	14	83	2	69	19	0	33	47	1.50
56587386--56587485	7	14.0	7	71	15	62	18	1	37	44	1.56
56587395--56587485	28	3.2	29	74	14	82	17	1	36	45	1.56
56587641--56587688	15	3.3	15	77	16	55	20	0	33	45	1.52
56587636--56587685	22	2.3	21	77	16	57	24	0	30	46	1.53
56588474--56588528	19	2.7	20	78	18	60	69	3	0	27	1.05
56588495--56588534	15	2.8	14	85	14	55	75	0	0	25	0.81
56588495--56588535	21	2.0	21	85	0	55	75	0	0	24	0.80
56588503--56588542	15	2.6	15	84	4	53	72	2	0	25	0.97
56588541--56588567	14	1.9	14	100	0	54	44	3	0	51	1.19
56588656--56588700	22	2.0	22	87	8	65	71	0	8	20	1.12
56591935--56592294	46	7.8	46	94	0	533	39	15	23	21	1.91
56595848--56596502	321	2.0	322	94	1	1163	41	7	20	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56599755--56599783	6	4.8	6	100	0	58	51	0	48	0	1.00
56603441--56603481	21	2.0	21	81	18	50	31	19	26	21	1.97
56607017--56607148	43	3.1	43	82	6	169	34	15	21	29	1.94
56608461--56608511	25	2.0	25	96	0	93	39	3	17	39	1.68
56612522--56612562	21	2.0	21	90	0	64	29	21	29	19	1.98
56620844--56620922	34	2.4	34	80	6	81	45	11	21	21	1.83
56622262--56622432	86	2.0	86	90	1	272	42	19	15	21	1.89
56644606--56644712	40	2.7	40	86	1	133	32	27	15	24	1.96
56647462--56647499	14	2.5	16	87	8	53	42	2	21	34	1.67
56647756--56647841	43	2.0	43	90	0	136	23	18	29	29	1.98
56647846--56647908	26	2.4	26	91	0	99	17	7	34	39	1.79
56652372--56652405	17	2.0	17	100	0	68	23	11	35	29	1.90
56653514--56653627	38	3.0	38	100	0	228	31	13	23	31	1.93
56654816--56654960	40	3.6	40	85	4	193	25	24	26	23	2.00
56656774--56656802	13	2.2	13	100	0	58	31	20	13	34	1.92
56661197--56661228	16	2.0	16	100	0	64	43	18	6	31	1.75
56665374--56665410	17	2.2	17	100	0	74	35	18	5	40	1.74
56670570--56670597	13	2.2	13	100	0	56	39	21	14	25	1.91
56675424--56675474	24	2.1	24	96	0	93	49	7	15	27	1.72
56699901--56699969	21	3.0	24	66	20	65	23	14	24	37	1.92
56699879--56699969	45	2.0	45	89	4	139	24	14	24	37	1.92
56706842--56706887	3	15.3	3	86	0	65	63	2	4	30	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56706842--56706887	15	3.1	15	93	0	74	63	2	4	30	1.26
56709421--56709458	20	2.0	20	94	5	69	63	0	10	26	1.27
56710604--56710641	14	2.9	13	81	11	51	18	18	10	52	1.73
56712231--56712273	20	2.1	21	91	4	70	67	0	9	23	1.19
56713455--56713497	20	2.1	21	91	4	70	67	0	9	23	1.19
56726978--56727054	23	3.3	24	92	3	115	35	2	12	49	1.55
56730312--56730346	16	2.1	17	94	5	63	48	0	11	40	1.39
56733032--56733082	25	2.0	25	92	0	84	47	9	5	37	1.61
56733040--56733097	25	2.4	25	85	2	73	55	5	5	34	1.45
56733883--56733918	18	2.0	18	89	10	56	33	5	0	61	1.19
56735779--56736065	143	2.1	137	82	6	344	20	22	25	31	1.98
56735779--56736065	68	4.1	69	79	7	299	20	22	25	31	1.98
56737636--56737679	21	2.1	21	83	8	54	56	9	6	27	1.55
56740934--56740978	22	2.0	22	100	0	90	37	8	8	44	1.67
56742738--56742771	15	2.2	16	89	5	52	47	14	0	38	1.45
56745347--56745382	17	2.1	18	90	10	58	44	0	2	52	1.15
56746983--56747035	26	2.0	26	100	0	106	54	3	11	30	1.53
56746987--56747043	26	2.2	26	90	6	89	57	5	8	28	1.50
56751172--56751216	22	2.0	23	82	4	56	37	6	0	55	1.26
56754776--56754951	68	2.6	68	79	12	175	33	15	28	21	1.95
56755379--56755615	119	2.0	119	94	0	420	40	10	11	37	1.76
56769250--56769296	6	7.7	6	90	4	76	19	0	0	80	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56772682--56772720	18	2.2	18	86	9	53	10	12	0	76	1.01
56775064--56775143	36	2.1	38	88	9	119	65	5	8	21	1.40
56776315--56776437	60	2.0	60	93	3	212	26	5	48	18	1.70
56776445--56776480	18	2.0	18	89	10	56	25	5	47	22	1.73
56776557--56776664	57	1.9	57	84	3	146	21	13	39	25	1.90
56776575--56776914	57	6.0	56	76	14	275	23	11	37	27	1.90
56776646--56776741	48	2.0	48	87	0	138	23	13	41	20	1.88
56776711--56776889	33	5.7	33	76	11	160	24	11	35	29	1.90
56776867--56776961	24	4.0	24	68	10	77	26	8	35	29	1.86
56776878--56777252	48	7.8	48	95	0	615	22	7	39	30	1.81
56777224--56777274	24	2.0	26	85	7	70	25	5	41	27	1.78
56779224--56779266	22	2.0	21	86	4	59	44	9	6	39	1.64
56780110--56780148	20	2.0	19	85	5	51	35	0	2	61	1.10
56780081--56780156	28	2.6	30	76	14	79	42	0	2	55	1.14
56788359--56788609	41	6.1	41	83	1	288	17	19	30	32	1.95
56788359--56788609	123	2.0	123	85	3	335	17	19	30	32	1.95
56790060--56790110	20	2.6	21	78	12	54	23	5	7	62	1.44
56791953--56792124	88	2.0	88	82	2	211	44	8	13	33	1.73
56792803--56792846	17	2.5	18	81	3	54	45	2	2	50	1.27
56793793--56793891	17	5.6	17	88	7	144	38	12	13	36	1.81
56793784--56793891	35	3.0	35	95	4	189	37	11	13	37	1.81
56793793--56793891	18	5.6	18	90	4	157	38	12	13	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56797811--56797904	47	2.0	47	97	0	179	22	19	28	29	1.98
56799518--56799599	1	82.0	1	72	0	65	86	0	13	0	0.57
56799518--56799599	7	11.6	7	86	13	107	86	0	13	0	0.57
56799518--56799598	22	3.8	20	81	15	101	86	0	13	0	0.57
56799519--56799599	44	1.9	41	90	7	126	86	0	13	0	0.57
56800541--56800699	84	1.9	84	88	2	239	31	21	20	26	1.98
56801026--56801200	87	2.0	88	82	3	210	31	16	21	30	1.95
56800820--56801406	207	2.8	207	91	0	942	29	17	22	29	1.97
56811147--56811257	24	4.6	25	78	9	90	38	19	24	17	1.92
56818133--56818280	43	3.5	42	80	3	161	31	25	15	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186