genome.fa.s20.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  35  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10491042--10491108	21	3.3	21	85	4	75	43	17	23	14	1.87
10491249--10491285	17	2.2	17	90	0	56	48	10	0	40	1.38
10494366--10494433	30	2.3	30	82	5	75	47	7	17	27	1.74
10496580--10496899	46	7.0	45	95	1	480	40	13	23	22	1.90
10497185--10497217	17	2.0	17	94	5	59	51	0	12	36	1.39
10503516--10503640	48	2.6	48	85	1	162	25	14	28	32	1.95
10505083--10505259	39	4.5	39	84	1	228	31	2	19	45	1.65
10505535--10505594	30	2.0	30	93	0	102	20	3	20	56	1.56
10506667--10506711	22	2.0	22	83	8	56	51	17	0	31	1.46
10506883--10506925	22	2.0	22	90	0	68	32	18	18	30	1.95
10506871--10507049	73	2.5	73	91	0	286	35	22	16	24	1.95
10506974--10507078	51	2.1	51	96	0	192	36	23	16	23	1.94
10512699--10512982	145	1.9	147	92	1	473	45	8	31	14	1.75
10515839--10515915	36	2.1	37	81	11	88	42	5	0	51	1.24
10521548--10521633	21	4.1	21	84	1	84	31	29	26	12	1.93
10521859--10521914	29	2.0	29	92	3	96	48	30	3	17	1.65
10526359--10526397	20	2.0	20	90	10	62	41	7	2	48	1.45
10526412--10526454	22	2.0	22	95	0	77	39	6	4	48	1.51
10527994--10528070	39	2.0	39	100	0	154	38	20	10	29	1.86
10528875--10528925	23	2.2	23	86	6	77	25	15	27	31	1.96
10533093--10533128	18	2.0	18	100	0	72	38	27	0	33	1.57
10538510--10538553	22	1.9	24	90	9	74	25	20	0	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10539610--10539661	5	10.6	5	80	15	56	55	1	1	40	1.22
10539610--10539661	16	3.5	15	75	19	56	55	1	1	40	1.22
10544925--10545069	28	5.2	27	77	8	121	37	17	22	22	1.93
10544901--10545049	56	2.7	56	79	2	129	39	16	21	22	1.92
10544924--10545064	56	2.5	55	76	6	140	37	17	22	21	1.94
10546830--10546953	34	3.6	34	78	6	135	40	14	10	34	1.80
10547768--10547830	30	2.1	30	93	0	108	26	3	11	58	1.47
10561034--10561104	30	2.4	30	77	13	74	45	1	4	49	1.30
10564958--10565000	21	2.1	21	86	4	61	74	6	6	11	1.21
10565699--10565732	17	2.0	17	94	0	59	38	0	2	58	1.13
10565929--10565962	18	1.9	17	94	5	59	64	0	0	35	0.94
10565921--10566007	18	4.7	18	71	19	54	56	0	3	40	1.16
10569717--10569829	31	3.6	31	81	2	120	52	2	3	41	1.33
10570409--10570462	15	3.3	16	84	10	74	14	1	14	68	1.30
10570544--10570600	30	1.9	30	96	0	105	14	19	5	61	1.51
10574561--10574731	93	1.8	93	92	0	288	28	29	20	21	1.98
10574553--10574728	46	3.8	46	78	10	196	29	29	19	21	1.98
10576452--10576846	197	2.0	196	97	0	745	32	13	21	32	1.92
10577882--10577913	16	1.9	17	93	6	57	12	6	18	62	1.50
10583982--10584072	46	2.0	46	91	0	146	27	8	10	52	1.66
10584391--10584428	20	1.9	19	85	15	51	47	2	0	50	1.15
10595708--10595732	12	2.1	12	100	0	50	24	16	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10599903--10600107	52	3.9	51	84	8	245	24	18	27	29	1.98
10605767--10605831	31	2.1	31	97	0	121	30	6	30	32	1.82
10607546--10607751	52	3.9	52	79	3	191	24	17	26	31	1.97
10611722--10611754	16	2.1	16	94	0	57	27	6	6	60	1.44
10612451--10612484	13	2.7	13	86	4	52	20	0	11	67	1.21
10614417--10614498	40	2.0	40	100	0	164	39	7	19	34	1.80
10622198--10622227	15	1.9	16	93	6	53	23	0	6	70	1.11
10622978--10623033	26	2.2	25	81	15	62	32	0	3	64	1.11
10623531--10623637	33	3.4	32	67	19	82	38	0	11	50	1.38
10623515--10623648	60	2.2	61	85	4	182	32	0	11	55	1.37
10628856--10629144	132	2.2	132	86	2	393	32	17	15	34	1.92
10638681--10638788	53	2.0	53	98	0	207	30	18	19	31	1.96
10641123--10641525	44	9.2	44	89	0	574	31	15	28	25	1.95
10644375--10644665	132	2.2	132	86	3	399	31	17	16	33	1.93
10644789--10645027	130	1.8	130	83	1	318	28	20	18	32	1.96
10648097--10648174	27	2.9	27	94	0	129	25	29	24	20	1.99
10657771--10657805	15	2.4	14	86	9	52	71	2	5	20	1.19
10659504--10659876	147	2.6	148	88	8	562	35	21	9	33	1.86
10659845--10659908	31	2.0	32	93	3	112	42	25	6	26	1.78
10661288--10661422	62	2.2	62	82	0	171	24	24	28	22	2.00
10661400--10661434	13	2.8	13	91	4	54	5	31	42	20	1.75
10663636--10663684	26	2.0	24	88	8	71	63	4	0	32	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10663671--10663713	21	2.0	22	86	4	61	69	6	2	20	1.23
10666166--10666289	40	3.1	40	89	2	187	33	24	16	26	1.96
10666177--10666306	40	3.3	39	85	4	163	30	23	15	30	1.95
10669469--10669535	21	3.2	21	74	2	73	26	23	26	22	2.00
10670564--10671656	557	2.0	557	93	1	1879	34	17	12	36	1.87
10671805--10671847	14	3.1	14	81	15	54	58	9	2	30	1.42
10680663--10680726	33	2.0	32	84	3	83	60	15	3	20	1.48
10684082--10684184	51	2.0	51	98	0	197	24	16	15	43	1.86
10691802--10691838	16	2.4	17	82	17	53	62	2	0	35	1.10
10703053--10703113	18	3.3	18	76	15	54	68	3	1	26	1.14
10703042--10703102	28	2.1	29	85	8	81	68	3	1	26	1.14
10703436--10703474	19	2.1	19	90	0	60	25	2	2	69	1.14
10703553--10703582	11	2.6	11	94	5	51	40	0	6	53	1.27
10703722--10703783	27	2.3	27	91	0	97	46	9	27	16	1.78
10714383--10714440	13	4.5	13	84	0	71	37	27	8	25	1.85
10725959--10726040	43	1.9	42	82	7	103	25	17	25	31	1.97
10735370--10735394	13	1.9	13	100	0	50	48	8	0	44	1.32
10738383--10738475	44	2.1	45	95	2	170	31	20	23	24	1.98
10740934--10740997	31	2.1	31	90	0	101	25	23	15	35	1.94
10741191--10741309	23	5.0	24	89	7	181	28	21	21	28	1.99
10741190--10741307	47	2.5	46	89	8	175	27	22	21	28	1.99
10741358--10741424	20	3.3	20	93	0	116	32	20	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10741358--10741413	11	5.5	11	71	16	57	32	19	12	35	1.89
10741461--10741508	25	1.9	25	86	0	69	25	16	25	33	1.96
10749597--10749762	24	7.0	24	88	4	239	26	21	22	28	1.99
10749596--10749762	47	3.5	48	89	4	241	26	21	22	29	1.99
10749597--10749762	71	2.3	71	91	3	262	26	21	22	28	1.99
10749812--10749878	20	3.3	20	93	0	116	32	20	11	34	1.90
10749812--10749867	11	5.5	11	71	16	57	32	19	12	35	1.89
10760867--10760935	34	2.0	34	100	0	138	28	23	5	42	1.77
10766602--10766693	17	5.5	17	72	13	66	66	2	27	4	1.22
10767369--10767418	26	2.0	24	88	7	73	64	6	0	30	1.18
10767358--10767447	21	4.2	20	72	24	67	68	4	0	26	1.08
10768282--10768311	6	5.0	6	91	0	51	20	16	13	50	1.78
10768417--10768464	18	2.6	18	76	3	51	39	12	12	35	1.81
10768453--10768499	24	2.0	22	84	8	58	44	6	14	34	1.71
10776346--10776521	49	3.6	48	82	8	207	23	29	19	27	1.98
10779004--10779179	49	3.6	48	82	8	207	23	29	19	27	1.98
10790655--10790816	35	4.6	35	82	1	200	30	12	24	31	1.93
10790912--10791003	31	3.0	30	88	6	139	23	19	31	25	1.98
10795323--10795350	5	5.6	5	100	0	56	21	0	21	57	1.41
10802684--10802716	13	2.6	13	90	4	50	39	0	12	48	1.40
10803883--10804126	85	2.8	86	84	8	289	50	11	9	29	1.69
10803883--10804126	86	2.8	85	83	10	280	50	11	9	29	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10805508--10805539	14	2.4	13	90	10	55	62	12	6	18	1.50
10807209--10807241	13	2.6	13	90	4	50	39	0	12	48	1.40
10808408--10808651	85	2.8	86	84	8	289	50	11	9	29	1.69
10808408--10808651	86	2.8	85	83	10	280	50	11	9	29	1.69
10810204--10810290	43	2.0	43	95	0	156	37	19	21	20	1.94
10810493--10810637	74	2.0	74	86	2	202	20	22	26	31	1.98
10810709--10810747	20	2.1	19	85	9	53	2	23	17	56	1.53
10811242--10811272	12	2.6	12	94	0	53	48	32	3	16	1.62
10812103--10812172	26	2.7	26	82	2	79	21	28	15	34	1.94
10827543--10827580	7	5.6	7	90	3	60	28	10	44	15	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186