genome.fa.s20.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  137  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45203031--45203071	20	2.0	21	85	4	57	41	0	2	56	1.13
45209366--45209400	12	2.9	12	86	0	52	8	25	40	25	1.84
45210451--45210555	40	2.7	40	89	1	158	32	28	18	20	1.96
45212015--45212087	34	2.1	34	87	5	103	31	24	20	23	1.98
45214707--45214810	52	2.0	52	96	0	190	31	19	38	10	1.86
45216031--45216081	27	1.9	26	84	4	66	17	27	19	35	1.94
45223929--45223968	17	2.3	17	82	4	53	10	27	45	17	1.80
45227225--45227260	18	2.0	18	94	0	63	11	30	33	25	1.90
45227226--45227268	18	2.4	18	88	0	59	13	32	30	23	1.93
45227968--45228017	24	2.1	23	88	3	73	58	10	16	16	1.63
45230238--45230263	13	2.0	13	100	0	52	53	0	0	46	1.00
45237594--45237882	50	5.7	50	81	3	285	24	16	26	32	1.96
45237640--45237829	101	1.9	101	88	0	290	22	19	27	30	1.98
45241809--45241944	56	2.4	56	90	2	211	33	24	15	27	1.95
45250395--45250553	43	3.7	44	78	5	173	23	16	28	31	1.96
45254218--45254278	30	2.0	30	83	0	77	31	21	3	44	1.68
45260077--45260191	44	2.6	44	81	0	149	26	16	26	30	1.97
45261566--45261660	43	2.2	42	85	3	127	24	16	25	33	1.96
45278026--45278182	56	2.8	54	81	5	163	19	17	33	29	1.95
45285408--45285583	46	3.8	46	80	12	225	21	21	28	28	1.98
45285405--45285575	93	1.8	93	96	0	315	21	21	29	28	1.98
45286879--45287051	87	2.0	85	94	2	301	27	19	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45295980--45296025	24	1.9	24	86	0	65	56	19	15	8	1.65
45296241--45296326	28	3.0	28	84	3	109	27	15	27	29	1.96
45307332--45307504	46	3.7	46	76	10	181	23	21	26	28	1.99
45307329--45307499	93	1.8	93	89	0	270	22	21	27	28	1.99
45311423--45311476	20	2.8	20	86	5	67	14	22	42	20	1.88
45311716--45311839	27	4.6	27	89	2	187	33	16	25	25	1.96
45311716--45311860	53	2.7	53	87	4	184	33	17	23	24	1.96
45311716--45311860	27	5.4	26	87	3	182	33	17	23	24	1.96
45315906--45315958	23	2.3	23	87	6	72	81	5	0	13	0.86
45315922--45315958	17	2.2	17	95	0	65	83	2	0	13	0.74
45315900--45315958	6	9.5	6	78	14	66	81	5	0	13	0.85
45318783--45318812	15	2.0	15	93	0	51	3	13	33	50	1.58
45319806--45319844	20	2.0	20	100	0	78	28	15	30	25	1.96
45327183--45327267	30	3.0	27	73	21	84	72	0	8	18	1.08
45337546--45337598	21	2.5	21	84	6	63	13	26	33	26	1.93
45339804--45339836	15	2.3	15	89	5	50	18	12	36	33	1.88
45341565--45341630	28	2.4	28	82	2	71	22	21	18	37	1.94
45343176--45343238	28	2.3	28	83	8	76	22	22	20	34	1.96
45344244--45344306	28	2.3	28	86	8	85	20	22	22	34	1.96
45348903--45348955	21	2.4	21	81	6	61	32	24	15	28	1.95
45364068--45364231	43	3.8	43	78	6	152	22	18	25	33	1.96
45365572--45365670	27	3.7	27	67	10	76	38	22	8	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45365654--45365767	27	4.3	26	83	5	129	38	18	16	26	1.92
45366155--45366219	22	3.0	22	75	8	69	20	23	23	33	1.97
45366378--45366485	27	4.0	26	83	5	117	19	23	20	37	1.95
45366378--45366485	54	2.0	53	83	1	135	19	23	20	37	1.95
45366602--45366714	6	18.3	6	66	18	54	20	20	12	46	1.82
45366602--45366693	25	3.7	25	82	0	121	20	21	11	45	1.83
45373855--45374078	40	5.6	40	87	3	306	24	23	26	25	2.00
45373859--45374078	83	2.7	80	88	5	302	23	24	27	25	2.00
45377660--45378221	287	2.0	287	98	0	1090	31	15	22	30	1.95
45384539--45384983	229	1.9	229	94	0	784	31	15	21	31	1.95
45385047--45385125	39	2.0	39	95	0	140	51	8	16	22	1.72
45389885--45389963	37	2.1	37	88	4	115	25	30	18	25	1.98
45390082--45390304	47	4.7	47	88	1	304	27	30	9	32	1.88
45393847--45394032	42	4.2	46	76	15	158	30	25	15	28	1.96
45393898--45394026	48	2.8	45	86	9	158	30	25	15	28	1.96
45394039--45394162	37	3.4	37	89	4	189	25	28	18	28	1.98
45394381--45394422	19	2.3	19	95	4	77	33	11	14	40	1.82
45398263--45398351	20	4.4	20	77	4	90	39	20	30	10	1.85
45399451--45399487	4	9.2	4	93	0	65	0	27	0	72	0.84
45403698--45403754	29	2.0	29	100	0	114	38	21	15	24	1.92
45403814--45403886	28	2.6	29	82	6	87	35	20	12	31	1.90
45409944--45410012	36	1.9	36	96	0	129	30	11	33	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45410402--45410476	36	2.1	36	97	0	141	28	14	22	34	1.94
45415321--45415578	45	5.9	45	79	8	257	22	17	28	31	1.96
45415329--45415578	89	2.9	85	80	8	258	22	17	28	30	1.97
45424365--45424397	11	3.1	11	86	4	50	36	0	0	63	0.95
45427152--45427227	40	1.9	40	86	5	109	26	19	27	26	1.99
45429464--45429520	22	2.6	22	75	10	62	26	28	22	22	1.99
45432017--45432090	29	2.6	29	89	4	105	25	16	32	25	1.96
45435321--45435387	33	2.0	33	100	0	134	23	20	14	40	1.90
45442886--45442926	20	2.1	20	86	4	57	60	4	0	34	1.18
45448457--45448494	19	2.0	19	100	0	76	5	31	5	57	1.43
45450730--45450785	29	1.9	29	85	0	76	46	7	1	44	1.41
45450815--45450909	31	3.1	30	77	5	93	47	11	5	35	1.62
45458748--45458797	25	2.0	25	100	0	100	24	32	4	40	1.73
45460358--45460414	19	3.0	19	100	0	114	36	5	21	36	1.76
45469689--45469815	38	3.3	38	87	0	182	18	18	26	37	1.93
45471594--45471744	75	2.0	75	96	0	275	47	14	5	31	1.68
45480348--45480391	22	2.0	22	86	0	61	45	2	4	47	1.35
45483646--45483757	27	4.2	26	84	5	125	35	24	23	16	1.95
45483646--45483757	54	2.1	54	88	6	165	35	24	23	16	1.95
45484718--45484813	49	2.0	49	97	0	183	29	26	9	35	1.87
45490238--45490349	27	4.2	26	88	5	143	35	23	24	16	1.95
45490238--45490349	54	2.1	54	88	3	163	35	23	24	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45494874--45495113	95	2.5	95	80	3	243	38	17	15	29	1.90
45506672--45506840	90	1.9	91	81	1	205	26	21	28	24	1.99
45512001--45512036	17	2.1	17	100	0	72	36	27	11	25	1.90
45514903--45515075	46	3.7	46	76	10	181	30	26	20	22	1.98
45514908--45515076	93	1.8	93	89	0	266	30	27	20	22	1.98
45530323--45530363	14	3.1	14	79	10	50	73	2	4	19	1.13
45545344--45545399	27	2.0	27	93	6	94	48	7	16	28	1.72
45546643--45546846	40	5.1	40	85	1	250	22	22	27	27	1.99
45554673--45554876	40	5.1	40	90	1	286	22	22	28	26	1.99
45560766--45561049	101	3.0	98	87	7	397	38	15	9	35	1.81
45560867--45561049	89	2.1	86	90	3	294	39	15	8	36	1.79
45561287--45561311	11	2.3	11	100	0	50	92	0	8	0	0.40
45562491--45562538	24	2.0	24	100	0	96	54	0	4	41	1.20
45567851--45567917	35	1.9	35	90	0	107	32	7	13	46	1.71
45573399--45573484	42	2.0	42	97	0	163	22	22	20	34	1.96
45578824--45578893	33	2.1	33	97	0	131	58	4	10	27	1.49
45579083--45579130	24	2.0	24	84	8	62	58	4	6	31	1.42
45579165--45579340	30	5.9	30	67	21	102	61	1	3	32	1.22
45579216--45579288	3	24.0	3	73	22	55	64	0	0	35	0.94
45579211--45579281	15	4.7	15	81	16	85	63	0	1	35	1.03
45579216--45579281	7	9.0	7	79	15	71	62	0	0	37	0.96
45579216--45579348	25	5.4	25	69	24	86	63	1	1	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45584751--45584841	19	4.9	19	85	8	134	36	16	9	37	1.82
45584751--45584841	35	2.5	37	87	8	132	36	16	9	37	1.82
45597278--45597368	19	4.9	19	82	8	125	37	16	9	36	1.82
45597278--45597368	35	2.5	37	85	8	123	37	16	9	36	1.82
45599179--45599342	27	6.0	26	84	9	195	35	21	24	18	1.96
45599179--45599342	54	3.0	54	90	2	240	35	21	24	18	1.96
45607265--45607431	27	6.1	27	84	10	216	35	22	23	17	1.95
45607265--45607431	54	3.1	54	91	2	264	35	22	23	17	1.95
45609292--45609407	50	2.4	47	84	5	144	27	22	14	35	1.93
45613093--45613283	42	4.5	43	74	8	156	31	24	15	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186