genome.fa.s20.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  147  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48592271--48592310	21	1.9	21	84	0	53	35	7	22	35	1.82
48594700--48594758	28	2.1	28	96	0	109	42	6	23	27	1.79
48595407--48595541	69	2.0	69	86	5	193	20	27	23	28	1.99
48597199--48597232	16	2.1	16	100	0	68	29	0	23	47	1.52
48598054--48598086	17	1.9	17	88	11	50	75	0	6	18	1.00
48598206--48598249	20	2.2	20	92	4	72	47	9	0	43	1.35
48603246--48603502	111	2.3	111	83	2	311	33	26	14	26	1.94
48603273--48603502	55	4.1	56	86	1	311	33	25	14	26	1.94
48606227--48606254	14	2.0	14	100	0	56	42	21	0	35	1.53
48606866--48606934	6	11.5	6	79	0	57	33	33	28	4	1.77
48606878--48606934	30	1.9	30	88	0	87	35	31	28	5	1.79
48606878--48606929	18	2.9	18	79	0	68	36	30	26	5	1.80
48607399--48607538	49	2.9	49	92	0	235	43	10	11	34	1.75
48611279--48611318	4	9.5	4	84	10	53	0	22	0	77	0.77
48611278--48611319	22	1.9	22	95	0	75	0	23	0	76	0.79
48612005--48612030	2	13.0	2	100	0	52	50	50	0	0	1.00
48618448--48618527	25	3.2	25	85	5	108	41	12	7	38	1.71
48619991--48620045	26	2.1	26	96	0	101	43	12	16	27	1.84
48625580--48625615	16	2.2	16	90	5	54	19	0	5	75	1.00
48625858--48626068	10	21.7	9	64	19	59	57	3	2	36	1.28
48625878--48625920	9	4.8	9	80	8	52	60	2	0	37	1.10
48625895--48625951	22	2.6	22	86	2	80	59	3	1	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48630639--48630776	73	1.9	73	89	0	213	46	10	10	32	1.72
48634728--48634915	27	7.0	26	84	7	216	36	20	23	19	1.95
48634758--48634918	81	2.0	81	91	3	263	35	21	24	18	1.95
48635883--48635941	26	2.3	26	90	0	91	35	23	6	33	1.82
48641211--48641369	27	5.9	27	80	11	175	33	20	25	20	1.97
48641229--48641372	54	2.7	54	92	2	236	34	22	25	18	1.96
48642330--48642385	26	2.4	22	73	21	58	37	17	7	37	1.78
48642337--48642395	26	2.3	26	93	0	100	35	22	6	35	1.80
48643696--48643881	96	1.9	96	84	2	248	41	17	28	12	1.85
48648745--48648773	6	4.8	6	100	0	58	34	0	65	0	0.93
48651279--48651343	33	2.0	33	81	0	76	16	41	12	29	1.85
48651603--48651760	48	3.3	48	85	1	201	50	10	8	31	1.67
48655082--48655308	46	4.9	46	92	1	330	21	23	14	40	1.89
48657439--48657484	11	4.0	11	78	10	56	65	0	0	34	0.93
48657433--48657483	24	2.1	24	88	0	75	62	1	0	35	1.06
48662399--48662434	13	2.8	14	84	16	51	27	25	0	47	1.52
48662379--48662441	26	2.5	25	80	14	60	28	23	0	47	1.52
48662386--48662426	18	2.2	19	87	12	59	29	24	0	46	1.53
48662602--48662662	21	2.8	23	80	14	85	34	26	24	14	1.94
48662589--48662674	21	3.9	23	77	10	81	37	24	22	16	1.93
48663046--48663103	15	3.8	15	88	2	89	51	12	0	36	1.39
48663049--48663107	30	2.0	28	93	6	100	55	11	0	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48663259--48663306	2	24.0	2	100	0	96	50	50	0	0	1.00
48664077--48664104	13	2.2	13	100	0	56	0	14	7	78	0.95
48667109--48667230	43	2.8	42	80	6	120	31	19	22	27	1.98
48667108--48667281	87	2.0	88	80	7	194	32	17	20	29	1.96
48667477--48667586	51	2.2	51	88	0	166	36	17	14	31	1.90
48667382--48667668	146	1.9	148	81	5	346	32	17	18	31	1.94
48667630--48667755	44	2.9	44	84	4	173	27	16	23	31	1.96
48667627--48667844	89	2.5	88	80	3	224	31	15	22	30	1.95
48667809--48668064	141	1.8	141	83	1	343	32	14	21	32	1.93
48667946--48668657	44	15.6	44	72	11	157	34	16	18	29	1.93
48668136--48668659	44	11.6	44	77	6	390	35	16	19	28	1.94
48668180--48668295	46	2.5	46	85	4	153	40	18	14	26	1.89
48668136--48668607	89	5.2	88	77	8	389	35	17	19	28	1.94
48668136--48668653	133	3.8	132	77	8	447	35	16	19	28	1.94
48673083--48673108	6	4.3	6	100	0	52	80	0	0	19	0.71
48673124--48673169	18	2.6	18	89	0	65	2	30	2	65	1.16
48673112--48673165	22	2.5	22	75	6	56	1	24	1	72	1.05
48673260--48673332	27	2.7	27	86	0	110	27	30	24	17	1.97
48694063--48694101	21	1.9	20	84	5	51	41	2	0	56	1.13
48714184--48714250	33	2.0	33	94	0	116	40	20	13	25	1.89
48717424--48717501	37	2.1	37	83	6	97	43	5	14	37	1.67
48722508--48722561	22	2.4	23	90	3	83	50	1	1	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48722508--48722570	22	2.8	22	80	2	63	49	3	1	46	1.27
48731681--48731715	16	2.2	16	89	0	52	37	25	14	22	1.92
48734866--48734911	23	2.0	23	84	12	60	45	10	6	36	1.65
48734873--48734917	23	2.0	23	82	8	56	40	13	8	37	1.76
48739344--48739381	19	2.0	19	100	0	76	42	21	15	21	1.89
48742570--48742672	34	3.0	34	95	0	179	29	10	10	49	1.71
48744312--48744437	47	2.7	47	84	0	153	22	15	30	31	1.94
48752916--48752957	21	2.0	21	86	9	59	61	0	2	35	1.09
48754562--48754721	81	2.0	82	86	1	223	20	16	7	55	1.65
48754510--48754727	28	8.0	27	71	13	153	21	16	6	55	1.64
48755022--48755086	34	1.9	34	84	6	87	27	10	12	49	1.73
48755234--48755505	138	2.0	138	87	1	393	25	23	15	36	1.93
48756481--48756645	87	1.9	86	86	3	233	27	14	21	36	1.92
48757123--48757198	37	2.1	37	92	5	127	32	9	18	39	1.82
48759065--48759105	18	2.3	18	91	8	66	39	0	0	60	0.96
48764538--48764576	16	2.4	17	91	4	62	41	2	33	23	1.68
48764674--48764755	35	2.4	35	85	2	103	29	17	23	30	1.97
48765436--48765647	102	2.1	102	87	0	298	21	22	26	29	1.99
48784729--48784778	25	1.9	25	84	15	66	70	0	10	20	1.16
48790683--48790713	16	1.9	16	93	0	53	45	16	25	12	1.83
48790932--48791029	28	3.7	28	76	17	109	23	15	35	25	1.94
48812736--48812783	24	2.0	24	100	0	96	33	12	29	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48817052--48817305	56	4.5	55	87	1	337	29	14	22	33	1.94
48817067--48817336	112	2.4	112	84	3	321	28	14	22	34	1.94
48824471--48824664	54	3.6	53	78	2	181	19	23	18	39	1.93
48826370--48826467	27	3.5	28	90	2	135	26	13	28	31	1.94
48826398--48826480	27	3.0	27	87	5	96	30	12	25	32	1.92
48826370--48826481	28	4.0	27	83	6	98	28	12	25	33	1.92
48836204--48836230	12	2.2	12	100	0	54	51	7	0	40	1.30
48836678--48836772	27	3.4	28	89	2	129	26	12	28	32	1.93
48836703--48836786	27	3.0	27	87	5	96	29	11	25	33	1.91
48839916--48839946	16	1.9	16	100	0	62	38	19	19	22	1.93
48840484--48840531	23	2.1	23	96	0	87	31	29	6	33	1.82
48844406--48844484	39	2.0	39	97	0	149	18	17	8	54	1.68
48851513--48851543	15	2.1	15	100	0	62	54	6	25	12	1.62
48856724--48856758	18	1.9	18	100	0	70	28	17	14	40	1.88
48857035--48857182	39	3.8	39	90	0	226	26	18	24	30	1.98
48858904--48858963	30	2.0	30	86	0	84	26	25	8	40	1.84
48866392--48866451	30	2.0	30	86	0	84	30	23	8	38	1.84
48869477--48869560	25	3.4	25	88	6	109	26	22	22	28	1.99
48869608--48869664	20	2.8	20	97	0	105	35	19	12	33	1.89
48869608--48869663	11	5.5	11	73	16	57	33	19	12	33	1.89
48869619--48869668	5	10.0	5	75	16	50	36	20	8	36	1.82
48877990--48878338	177	2.0	177	99	0	689	37	20	8	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48880840--48880903	31	2.1	31	87	0	92	23	23	15	37	1.93
48883935--48883998	31	2.1	31	87	0	92	23	23	15	37	1.93
48884207--48884280	25	2.9	25	86	6	87	29	18	21	29	1.97
48884220--48884292	25	2.9	26	87	4	96	26	21	23	28	1.99
48884338--48884394	20	2.8	20	97	0	105	33	21	10	35	1.87
48884338--48884393	11	5.5	11	75	16	66	32	21	10	35	1.88
48886141--48886170	13	2.3	13	94	0	51	16	56	16	10	1.66
48887136--48887289	42	3.7	43	77	10	158	29	26	16	27	1.97
48887550--48887653	52	2.0	52	98	0	199	40	18	9	31	1.83
48888526--48888627	37	2.8	37	93	0	168	26	30	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186