genome.fa.s20.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  174  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57926555--57926716	88	1.8	88	89	0	252	29	24	19	26	1.98
57927294--57927380	45	1.9	45	83	0	111	47	11	16	25	1.80
57927654--57927692	15	2.8	14	88	11	62	7	15	0	76	0.99
57934261--57934303	9	4.8	9	91	0	59	46	16	9	27	1.77
57934516--57934575	30	2.0	31	83	3	77	20	38	0	41	1.52
57938256--57938291	16	2.2	16	95	0	63	44	19	16	19	1.87
57939428--57939467	16	2.5	16	87	0	53	47	5	7	40	1.54
57939456--57939598	68	2.1	68	92	2	245	41	4	8	44	1.56
57944085--57944361	147	1.9	147	83	1	358	29	20	20	29	1.98
57945906--57946288	188	2.0	188	90	1	599	37	23	9	29	1.87
57949282--57949338	27	2.1	27	100	0	114	61	7	7	24	1.47
57949514--57949705	98	2.0	97	88	3	287	48	13	17	21	1.80
57951011--57951046	18	1.9	19	88	5	56	38	22	16	22	1.93
57956627--57956651	13	1.9	13	100	0	50	40	0	8	52	1.31
57959232--57959335	55	1.9	55	95	0	190	17	25	33	24	1.96
57961447--57961572	64	2.0	63	82	1	153	22	18	23	35	1.95
57973674--57973702	3	9.7	3	100	0	58	0	0	31	68	0.89
57973983--57974013	16	1.9	16	100	0	62	38	6	25	29	1.81
57976369--57976472	8	13.1	8	95	2	192	50	0	0	50	1.00
57976674--57976717	23	1.9	23	86	9	63	47	0	4	47	1.22
57976832--57976876	19	2.5	18	82	7	56	26	0	6	66	1.16
57978353--57978984	316	2.0	315	92	0	1039	31	19	18	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57980808--57980842	5	7.0	5	93	0	61	0	17	0	82	0.66
57982525--57982647	29	4.2	29	80	5	131	35	19	4	39	1.73
57982525--57982647	58	2.1	59	83	4	151	35	19	4	39	1.73
57982979--57983048	3	24.7	3	78	16	62	72	0	27	0	0.84
57982981--57983048	17	3.8	17	88	7	82	72	0	27	0	0.85
57983018--57983052	13	2.7	13	90	0	61	82	0	17	0	0.66
57983001--57983052	7	7.3	7	76	20	54	78	0	21	0	0.74
57982985--57983052	23	3.1	22	80	17	79	75	0	25	0	0.81
57983101--57983140	17	2.3	18	83	8	57	37	42	20	0	1.52
57983210--57983262	26	2.0	26	85	0	70	30	45	18	5	1.73
57983342--57983415	11	6.6	11	79	14	80	82	0	16	1	0.74
57983350--57983409	7	8.3	7	82	14	61	85	0	15	0	0.61
57983350--57983415	8	8.2	8	79	11	73	84	0	15	0	0.61
57983344--57983415	28	2.5	30	82	13	98	83	0	15	1	0.72
57983350--57983415	33	2.0	33	88	5	98	84	0	15	0	0.61
57983775--57983816	21	2.0	20	90	4	66	35	14	9	40	1.78
57983775--57983816	20	2.1	19	86	8	57	35	14	9	40	1.78
57983922--57984051	35	3.7	35	81	4	154	33	13	10	43	1.77
57983922--57984080	17	8.9	18	72	12	114	30	13	10	45	1.76
57983968--57984050	18	4.7	18	82	13	82	30	13	13	43	1.82
57983985--57984126	34	4.0	34	74	13	117	31	12	11	43	1.79
57983971--57984134	17	9.2	17	71	15	100	30	13	12	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57984100--57984137	20	1.9	20	100	0	76	36	10	10	42	1.74
57990660--57990821	79	2.0	80	96	1	299	29	14	17	38	1.90
57990708--57990947	122	2.0	119	92	5	405	26	14	21	37	1.92
57990826--57992672	77	23.4	77	93	3	2321	28	15	19	36	1.93
57992668--57992710	21	2.0	21	82	8	52	30	9	0	60	1.28
57992809--57994312	86	17.9	86	90	5	2111	25	14	19	40	1.90
57993750--57994526	82	9.7	80	82	10	719	28	16	20	35	1.93
57994713--57994825	29	3.9	29	79	4	120	36	17	5	40	1.73
57994712--57994834	58	2.1	59	83	7	153	37	17	4	39	1.72
57995168--57995246	3	26.7	3	78	14	76	72	0	27	0	0.85
57995196--57995249	7	8.1	7	81	8	51	77	0	22	0	0.76
57995193--57995249	19	3.1	19	80	12	66	77	0	22	0	0.77
57995515--57995548	16	2.2	15	89	5	50	79	0	20	0	0.73
57995766--57995808	21	2.0	21	90	0	68	34	13	9	41	1.77
57995963--57996000	17	2.2	18	90	4	60	26	18	13	42	1.87
57995922--57996001	35	2.3	35	82	2	97	28	16	10	45	1.79
57995969--57996074	17	6.1	17	71	14	81	31	13	11	44	1.79
57996037--57996074	20	1.9	20	100	0	76	36	10	10	42	1.74
58006097--58006122	5	5.2	5	100	0	52	38	19	19	23	1.93
58006626--58006664	20	2.0	20	90	5	62	51	0	25	23	1.49
58009231--58009509	80	3.5	80	100	0	558	37	11	21	29	1.89
58009479--58009536	27	2.1	27	93	0	98	25	8	29	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58009792--58009817	13	2.0	13	100	0	52	46	15	15	23	1.83
58009974--58010003	14	2.1	14	93	0	51	36	10	43	10	1.72
58010026--58010071	24	1.9	24	90	0	74	39	4	43	13	1.63
58011217--58011326	29	3.6	29	70	20	87	54	3	0	41	1.18
58011179--58011393	112	1.9	116	91	4	357	52	4	0	42	1.24
58011284--58011356	10	7.9	10	66	17	50	56	1	0	42	1.08
58013682--58013715	12	2.8	12	100	0	68	61	26	5	5	1.42
58014154--58014213	20	3.0	20	79	13	61	55	3	30	11	1.52
58016066--58016121	17	3.3	17	79	0	67	50	28	7	14	1.69
58029985--58030046	26	2.4	26	88	0	88	33	11	12	41	1.79
58034311--58034344	17	2.0	17	94	0	59	0	20	17	61	1.34
58040014--58040054	15	2.9	14	78	7	55	63	0	0	36	0.95
58047690--58047751	26	2.4	26	88	0	88	32	12	14	40	1.84
58053801--58054023	40	5.6	39	80	5	207	25	27	21	26	1.99
58062603--58062641	20	2.1	19	85	9	53	41	23	0	35	1.55
58065566--58065606	15	2.9	14	78	7	55	63	0	0	36	0.95
58065680--58065720	21	2.0	20	85	4	55	60	0	4	34	1.18
58067587--58067687	51	2.0	51	98	0	193	33	4	16	44	1.70
58068707--58068885	90	2.0	90	95	0	322	26	17	22	33	1.96
58075406--58075518	58	1.9	58	91	3	183	28	17	20	33	1.95
58077985--58078018	17	2.0	17	88	0	50	2	14	17	64	1.40
58084971--58085011	15	2.9	14	78	7	55	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58084964--58085021	29	1.9	29	86	6	80	62	1	1	34	1.16
58084993--58085112	63	1.9	63	100	0	240	53	10	8	28	1.63
58090247--58090287	18	2.2	19	86	4	57	26	0	12	60	1.31
58099487--58099558	36	2.0	36	100	0	144	13	11	38	36	1.81
58105348--58105398	26	2.0	24	85	7	66	31	0	1	66	1.03
58107493--58107526	17	2.0	17	88	0	50	2	17	17	61	1.46
58109532--58109567	18	2.1	17	89	5	54	22	2	2	72	1.11
58114172--58114212	15	2.9	14	78	7	55	63	0	0	36	0.95
58116265--58116428	86	1.9	86	81	6	199	23	17	26	32	1.96
58119585--58119616	15	2.1	15	94	0	55	15	6	9	68	1.36
58121869--58121895	13	2.1	13	100	0	54	22	0	14	62	1.31
58138017--58138076	30	2.0	31	86	3	86	20	40	0	40	1.52
58149724--58149755	17	1.9	17	93	6	57	59	0	9	31	1.29
58150022--58150444	131	3.2	131	93	2	672	32	0	39	26	1.63
58150412--58150462	21	2.4	21	83	6	59	47	0	25	27	1.53
58150412--58150454	20	2.0	20	82	8	50	44	0	30	25	1.55
58150729--58150767	20	1.9	21	89	5	62	56	20	2	20	1.54
58152128--58152180	20	2.6	21	78	6	63	39	18	26	15	1.90
58153170--58153216	24	2.0	23	84	12	60	19	4	4	72	1.18
58154382--58154425	17	2.7	17	89	6	65	13	2	4	79	0.98
58157072--58157149	38	2.1	38	100	0	156	30	17	23	28	1.97
58158250--58158314	20	3.2	20	70	12	60	26	29	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58165638--58166795	44	25.7	44	77	5	760	34	15	19	30	1.93
58165906--58166236	51	6.9	49	71	15	210	33	16	19	30	1.94
58165772--58166769	95	10.9	95	75	8	525	34	15	19	30	1.93
58166143--58166318	89	2.0	89	85	6	241	35	15	19	28	1.93
58166239--58166468	90	2.6	90	78	2	221	34	13	18	33	1.90
58167402--58167448	13	3.5	14	82	8	53	78	0	14	6	0.93
58168492--58168541	22	2.3	22	86	3	75	24	16	4	56	1.57
58170058--58170083	9	2.9	9	100	0	52	11	11	23	53	1.69
58170069--58170117	24	2.0	24	100	0	98	30	4	20	44	1.70
58170762--58170880	37	3.0	40	71	9	109	25	17	23	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186