genome.fa.s20.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  22  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6465511--6465632	62	2.0	62	95	3	219	27	21	20	31	1.98
6465563--6466092	76	6.9	76	92	1	862	25	23	19	32	1.98
6465563--6466099	154	3.5	154	92	1	909	24	23	19	32	1.97
6476561--6476604	3	14.7	3	100	0	88	68	0	0	31	0.90
6476694--6476825	3	44.0	3	68	17	69	62	3	7	27	1.37
6476694--6476825	20	6.4	21	73	16	100	62	3	7	27	1.37
6476728--6476787	23	2.4	25	83	8	70	58	5	6	30	1.45
6476855--6476888	14	2.3	15	90	5	52	61	5	11	20	1.50
6476867--6476910	21	2.1	21	86	0	61	63	2	9	25	1.35
6476861--6476907	15	3.1	15	81	6	51	63	4	10	21	1.43
6478664--6478725	22	2.6	24	70	7	56	48	3	1	46	1.28
6479700--6479737	20	1.9	20	94	0	67	55	7	2	34	1.43
6479772--6479826	17	3.2	17	73	19	51	45	5	0	49	1.25
6481240--6481305	13	5.5	13	71	20	54	46	12	1	39	1.50
6481240--6481314	23	3.3	23	94	0	123	48	12	1	38	1.49
6482119--6482144	13	2.0	13	100	0	52	38	7	7	46	1.61
6483329--6483393	32	2.0	32	84	3	85	27	12	24	35	1.91
6483355--6483444	33	2.8	33	76	8	94	33	8	25	32	1.87
6490051--6490128	22	3.5	22	73	15	70	70	3	3	21	1.20
6492555--6492680	47	2.7	47	86	2	155	29	25	15	29	1.96
6492684--6492712	7	4.1	7	100	0	58	13	27	13	44	1.82
6492711--6492919	31	6.7	31	91	0	310	26	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6492897--6493073	50	3.5	50	88	2	257	26	21	16	35	1.94
6497862--6497917	13	4.5	13	78	13	55	51	12	0	35	1.40
6497986--6498029	22	2.0	22	95	0	79	29	34	4	31	1.78
6504987--6505024	19	2.0	19	100	0	76	36	26	15	21	1.93
6506070--6506117	9	5.3	9	87	0	69	29	2	22	45	1.64
6506119--6506582	241	1.9	241	96	0	865	33	14	18	33	1.91
6506624--6506670	24	2.0	24	87	8	69	46	8	17	27	1.76
6506718--6506851	64	2.1	64	98	0	259	46	3	11	38	1.59
6507205--6507234	10	3.1	10	95	4	53	83	0	10	6	0.81
6509360--6509411	19	2.7	20	84	6	70	32	1	38	26	1.68
6513492--6513519	13	2.2	13	100	0	56	71	14	0	14	1.15
6514933--6514995	25	2.5	26	92	7	105	69	22	3	4	1.21
6517688--6517723	12	3.0	12	95	0	63	27	25	5	41	1.77
6524493--6524552	31	2.0	30	90	3	93	66	0	5	28	1.12
6524800--6524861	24	2.5	24	79	7	72	22	0	3	74	0.96
6524957--6525004	20	2.4	20	83	13	55	41	6	0	52	1.27
6524965--6525014	20	2.4	21	83	3	66	36	6	2	56	1.36
6532090--6532127	17	2.2	17	90	0	58	34	2	2	60	1.24
6542289--6542320	16	2.0	16	100	0	64	31	6	12	50	1.65
6544387--6544457	31	2.3	31	87	2	97	30	5	5	57	1.45
6544872--6544950	24	3.0	25	80	10	88	55	8	8	26	1.60
6546223--6546367	72	2.0	72	100	0	290	38	17	11	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6552057--6552122	19	3.2	21	87	6	64	36	19	9	34	1.84
6552074--6552135	19	3.2	19	95	4	106	35	17	9	37	1.83
6552492--6552714	45	5.1	45	73	8	154	23	28	16	31	1.96
6552769--6553315	87	6.2	88	83	9	638	29	21	17	32	1.95
6552767--6553315	176	3.1	172	84	8	589	28	21	16	32	1.95
6552705--6553315	263	2.3	262	83	10	790	29	21	16	32	1.95
6553479--6553804	169	2.0	163	89	3	499	24	21	23	30	1.99
6553699--6553829	43	3.1	43	69	20	130	27	21	19	31	1.98
6553479--6553829	84	4.2	84	85	7	496	24	22	22	30	1.99
6554480--6554542	7	9.1	7	80	13	60	9	6	0	84	0.79
6554483--6554528	6	7.8	6	82	7	51	10	4	0	84	0.75
6554491--6554553	13	4.8	13	76	7	56	6	9	0	84	0.79
6559962--6560027	19	3.2	21	85	6	64	36	19	7	36	1.81
6559979--6560040	19	3.2	19	93	4	97	35	17	8	38	1.80
6560384--6560471	44	2.0	44	88	0	131	50	14	11	23	1.76
6563255--6563300	13	3.5	13	82	14	58	26	0	2	71	0.97
6564093--6564143	18	2.8	18	77	14	50	54	0	5	39	1.24
6564567--6565015	224	2.0	224	100	0	898	42	8	21	27	1.81
6571636--6571686	18	2.8	18	77	14	50	54	0	5	39	1.24
6577691--6577838	3	50.3	3	71	7	81	29	8	2	58	1.42
6577829--6577891	25	2.5	24	80	10	63	36	7	1	53	1.40
6584510--6584554	9	4.8	9	83	5	54	71	11	0	17	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6584551--6584596	24	1.9	24	86	8	67	41	4	6	47	1.49
6584618--6584651	17	2.0	17	88	11	52	70	8	0	20	1.13
6606891--6606938	3	16.3	3	82	4	53	62	6	2	29	1.31
6606896--6606934	15	2.7	15	92	4	62	66	7	0	25	1.18
6609915--6609978	31	2.1	31	93	0	110	15	18	9	56	1.66
6609923--6609985	31	2.0	31	90	0	99	17	19	9	53	1.70
6623934--6623976	21	2.0	21	86	8	61	48	9	2	39	1.48
6626023--6626080	28	2.2	27	82	11	75	51	6	1	39	1.39
6638914--6639002	29	2.9	30	75	12	85	53	11	11	23	1.68
6643948--6643981	17	1.9	17	88	5	50	52	14	0	32	1.42
6649694--6649719	5	5.2	5	100	0	52	80	19	0	0	0.71
6659457--6660191	369	2.0	369	97	0	1380	25	23	17	34	1.96
6660572--6660664	18	5.2	18	85	0	114	33	13	22	30	1.93
6660570--6660664	36	2.6	36	86	3	138	32	14	22	30	1.94
6669245--6669277	16	2.0	17	88	5	50	69	0	0	30	0.88
6669730--6669835	37	2.9	37	92	2	178	16	15	20	47	1.83
6669916--6670000	42	2.0	42	93	0	143	22	21	11	44	1.84
6669765--6669966	91	2.2	89	87	5	307	19	18	16	45	1.86
6675766--6675833	16	4.2	16	94	0	118	27	0	36	35	1.58
6675814--6675923	45	2.6	41	78	9	116	32	5	29	32	1.80
6680550--6680648	52	1.9	52	83	2	128	56	1	9	33	1.37
6680690--6680864	26	6.9	25	72	13	90	58	4	5	31	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6680748--6680865	26	4.5	26	75	9	91	59	5	5	29	1.43
6680780--6680896	51	2.3	49	77	15	123	56	4	5	33	1.43
6686407--6686446	3	13.3	3	100	0	80	65	0	0	35	0.93
6701918--6701942	12	2.1	12	100	0	50	16	8	0	76	1.02
6707648--6707696	3	16.3	3	100	0	98	65	0	0	34	0.93
6717464--6717592	67	1.9	67	98	0	249	43	14	13	28	1.83
6721016--6721051	17	2.1	17	90	10	56	50	0	5	44	1.25
6721943--6721988	24	1.9	24	86	8	67	47	4	6	41	1.49
6730222--6730264	17	2.4	18	81	18	54	58	4	4	32	1.39
6730364--6730394	16	1.9	16	93	0	53	54	6	6	32	1.51
6731408--6731451	22	2.0	22	86	0	61	11	15	13	59	1.62
6742545--6742688	58	2.5	58	89	0	216	32	19	25	22	1.97
6746202--6746438	50	4.7	50	82	3	287	25	17	26	30	1.97
6746202--6746438	101	2.4	100	81	2	278	25	17	26	30	1.97
6746156--6746449	50	5.8	50	79	5	261	26	17	25	30	1.97
6751291--6751338	26	1.9	24	91	8	78	27	2	4	66	1.21
6751284--6751336	21	2.4	23	76	20	60	24	1	5	67	1.22
6751299--6751342	13	3.4	13	74	0	52	31	2	4	61	1.28
6752137--6752184	26	1.9	24	91	8	78	27	2	4	66	1.21
6752130--6752182	21	2.4	23	76	20	60	24	1	5	67	1.22
6752145--6752188	13	3.4	13	74	0	52	31	2	4	61	1.28
6752531--6752591	27	2.2	28	82	8	72	59	9	4	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6754924--6754997	26	2.7	27	75	21	66	66	2	2	28	1.19
6754930--6754965	17	2.2	16	90	5	54	69	2	0	27	1.02
6755180--6755292	44	2.8	41	78	13	108	38	7	3	51	1.47
6758538--6758590	27	2.0	27	81	7	63	50	1	18	28	1.57
6762766--6762812	3	15.7	3	90	0	76	34	4	0	61	1.15
6762789--6762838	17	3.0	16	81	18	50	32	4	0	64	1.12
6763091--6763134	22	2.0	23	90	4	72	25	6	2	65	1.28
6763276--6763336	3	20.7	3	78	9	63	32	3	4	59	1.35
6763368--6763402	18	1.9	18	88	0	52	40	8	0	51	1.33
6768331--6768409	39	2.0	39	95	0	140	21	13	21	43	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186