genome.fa.s20.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  61750188

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   

This is table  108  of  186  ( 22216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35626565--35626631	22	3.1	22	84	2	91	35	2	0	61	1.12
35629194--35629228	16	2.3	15	90	5	52	17	0	2	80	0.84
35630687--35630824	33	4.3	33	64	28	82	47	3	2	46	1.35
35630707--35630750	19	2.3	19	84	7	54	47	2	2	47	1.27
35630659--35630836	96	1.8	97	93	3	315	47	2	2	46	1.31
35633248--35633322	37	2.0	37	97	0	141	28	25	17	29	1.97
35640770--35640812	16	2.9	15	80	10	52	58	0	0	41	0.98
35643681--35643953	49	5.7	49	72	11	149	24	29	19	26	1.98
35643832--35644046	46	4.6	47	78	8	161	25	26	18	29	1.98
35643874--35644046	46	3.7	45	79	9	177	25	26	17	30	1.97
35643832--35644046	94	2.3	94	84	1	261	25	26	18	29	1.98
35643690--35643950	141	1.9	141	83	5	323	25	29	18	26	1.98
35646726--35646776	18	2.8	18	93	0	93	37	25	11	25	1.90
35654865--35654986	49	2.5	49	83	4	147	22	28	21	27	1.99
35655021--35655175	48	3.3	48	78	3	179	25	27	17	29	1.97
35669062--35669095	14	2.6	14	90	9	54	52	8	0	38	1.33
35669844--35669903	30	2.0	30	93	0	102	28	1	11	58	1.43
35669985--35670027	18	2.3	19	80	15	54	25	2	9	62	1.37
35673121--35673175	14	4.1	13	78	21	51	72	3	3	20	1.15
35676974--35677019	24	2.0	23	87	8	67	71	0	8	19	1.11
35680292--35680362	22	3.2	23	70	8	74	32	5	15	46	1.69
35680289--35680377	44	2.0	44	97	0	169	33	4	16	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35684710--35684748	19	2.0	20	85	14	55	30	17	7	43	1.77
35686946--35686988	17	2.5	17	96	0	77	9	37	37	16	1.81
35689081--35689131	17	2.9	17	85	2	66	15	17	19	47	1.83
35692123--35692184	30	2.1	30	100	0	124	48	6	9	35	1.62
35694373--35694397	7	3.6	7	100	0	50	44	0	12	44	1.41
35701602--35701830	56	4.1	56	85	2	273	34	24	14	26	1.94
35702622--35702659	17	2.1	19	85	9	53	39	15	2	42	1.61
35711524--35711548	7	3.6	7	100	0	50	44	0	12	44	1.41
35712475--35712505	7	4.4	7	91	0	53	29	0	51	19	1.47
35717387--35717525	56	2.5	56	89	0	215	36	24	12	26	1.91
35719030--35719058	12	2.5	12	94	5	51	37	17	6	37	1.76
35728548--35728610	22	2.8	22	95	2	108	23	6	46	23	1.75
35742848--35743017	48	3.5	48	85	0	205	27	20	23	28	1.99
35745531--35745568	19	2.0	20	85	15	53	39	23	0	36	1.55
35745793--35745964	46	3.7	45	75	13	154	31	27	18	22	1.97
35745798--35745968	93	1.8	93	88	2	263	30	28	18	22	1.97
35746524--35746584	30	2.0	30	90	0	95	31	24	8	36	1.85
35755413--35755719	40	7.7	40	80	7	347	26	25	20	27	1.99
35755413--35755719	82	3.8	80	86	5	390	26	25	20	27	1.99
35755413--35755666	122	2.1	119	85	5	332	26	25	20	27	1.99
35755413--35755704	122	2.4	122	82	5	326	26	25	19	28	1.99
35766616--35766960	50	6.9	50	75	3	325	26	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35766617--35766798	101	1.8	100	83	4	240	26	16	24	31	1.96
35766615--35766958	151	2.3	150	87	5	503	27	18	24	30	1.98
35766780--35766973	101	1.9	101	90	0	307	26	21	24	27	1.99
35767141--35767172	16	2.0	16	93	0	55	46	0	18	34	1.49
35775314--35775568	44	5.6	45	81	8	279	25	28	16	29	1.97
35775314--35775577	46	5.8	45	81	6	252	25	28	17	29	1.97
35781418--35781564	42	3.4	42	76	11	138	27	21	24	27	1.99
35782022--35782053	12	2.6	13	90	9	50	18	6	25	50	1.70
35783982--35784044	27	2.3	27	86	0	90	39	23	17	19	1.92
35784106--35784152	23	2.0	23	84	15	62	25	12	19	42	1.86
35784414--35784471	18	3.2	18	78	9	73	24	20	15	39	1.91
35785625--35785681	29	2.0	29	92	0	96	28	22	24	24	2.00
35786313--35786412	24	4.1	25	75	3	69	23	21	17	39	1.92
35786337--35786412	25	3.1	25	75	3	73	23	22	15	38	1.93
35789437--35789498	32	1.9	32	96	0	115	25	24	11	38	1.88
35789551--35789821	28	9.7	28	73	4	188	28	28	13	29	1.94
35789551--35789821	84	3.2	84	81	3	321	28	28	13	29	1.94
35799122--35799175	25	2.2	25	83	12	67	64	0	1	33	1.04
35799340--35799389	21	2.3	21	80	13	57	62	2	4	32	1.25
35805489--35805515	13	2.1	13	100	0	54	37	7	7	48	1.59
35819525--35819696	46	3.7	46	80	4	193	28	18	27	25	1.98
35819751--35819840	47	1.9	47	95	0	162	28	18	30	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35823339--35823393	29	1.9	29	85	3	76	21	40	18	20	1.92
35828839--35828910	36	2.0	36	94	0	126	12	12	16	58	1.63
35833819--35833855	6	6.0	6	93	3	56	16	5	0	78	0.93
35844717--35844773	28	2.0	29	82	3	71	40	3	24	31	1.72
35844718--35844782	28	2.3	28	81	2	67	41	3	24	30	1.70
35852190--35852217	12	2.3	12	100	0	56	7	7	50	35	1.57
35862716--35862873	43	3.7	44	73	7	119	32	25	16	25	1.96
35864836--35864891	9	5.8	10	80	12	64	35	5	21	37	1.76
35864836--35864891	5	11.6	5	78	14	64	35	5	21	37	1.76
35864834--35864899	20	3.3	20	91	8	109	36	9	19	34	1.84
35864947--35865055	25	4.4	24	87	6	130	28	22	22	27	1.99
35865264--35865355	38	2.8	31	75	21	105	34	18	22	23	1.96
35872913--35873009	25	3.9	25	78	6	92	26	22	19	30	1.98
35872915--35873022	50	2.2	49	83	11	132	28	20	20	30	1.97
35872960--35873036	25	3.2	23	83	7	82	27	18	20	33	1.96
35875122--35875214	44	2.1	44	82	5	118	24	17	25	32	1.97
35875122--35875232	44	2.6	43	80	5	116	25	17	26	31	1.97
35875137--35875244	44	2.5	44	80	1	119	25	18	26	28	1.98
35882936--35883206	46	5.8	46	71	6	215	28	27	19	23	1.99
35882992--35883158	47	3.6	47	73	16	175	27	28	19	24	1.99
35882946--35883208	93	2.8	93	95	1	456	28	28	19	23	1.99
35889406--35889437	14	2.4	13	90	10	55	62	12	6	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35892945--35892996	27	2.0	26	84	3	68	17	26	21	34	1.95
35893012--35893072	31	1.9	32	86	3	88	22	22	16	37	1.93
35897315--35897585	47	5.8	48	81	8	276	28	18	29	23	1.98
35897320--35897585	140	1.9	141	86	5	378	28	18	29	23	1.98
35901679--35901704	13	2.0	13	100	0	52	15	38	30	15	1.88
35902682--35902716	15	2.3	15	95	0	61	25	14	8	51	1.70
35905252--35905307	8	6.9	8	97	2	103	75	12	0	12	1.06
35910685--35910950	46	5.7	46	73	15	206	21	18	29	30	1.97
35910678--35910897	47	4.7	47	73	18	185	22	18	29	29	1.98
35910678--35910943	93	2.9	93	91	0	424	21	19	29	29	1.98
35920695--35920773	37	2.1	37	83	4	97	25	29	20	25	1.99
35920891--35921147	47	5.5	47	91	0	397	28	30	8	31	1.87
35927080--35927122	5	8.2	5	82	17	52	18	2	0	79	0.85
35927078--35927122	11	4.2	11	76	23	51	20	2	0	77	0.87
35939204--35939233	14	2.1	15	93	6	53	13	10	13	63	1.52
35959278--35959434	43	3.7	43	80	7	176	24	19	24	31	1.98
35964154--35964242	34	2.6	34	80	7	99	28	25	21	24	1.99
35971977--35972181	43	4.9	41	74	12	191	26	20	25	27	1.99
35971977--35972181	85	2.4	85	90	3	331	26	20	25	27	1.99
35973331--35973372	22	1.9	22	95	0	75	23	9	38	28	1.86
35975909--35976024	43	2.7	44	78	12	109	29	26	18	25	1.98
35983439--35983506	35	2.0	33	82	8	82	66	8	7	17	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35992992--35993169	27	6.6	27	83	3	205	26	15	28	29	1.96
35992993--35993148	82	1.9	81	88	3	233	26	15	28	29	1.96
35992989--35993169	82	2.2	81	83	2	229	27	15	27	29	1.96
36000182--36000359	27	6.6	27	83	3	205	26	15	28	29	1.96
36000183--36000338	82	1.9	81	88	3	233	26	15	28	29	1.96
36000179--36000359	82	2.2	81	83	2	229	27	15	27	29	1.96
36018299--36018476	27	6.6	27	83	3	205	26	15	28	29	1.96
36018300--36018455	82	1.9	81	88	3	233	26	15	28	29	1.96
36018296--36018476	82	2.2	81	83	2	229	27	15	27	29	1.96
36025605--36025733	49	2.7	49	78	7	124	26	31	10	32	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186